FFCP PHASE1:Hg19::chr17:67114125..67114150,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23460|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=36|TSSclassifier=W|UniProt=|association_with_transcript=0bp_to_uc002jhx.1_5end|coexpression_cluster_id=C74|description=CAGE_peak_4_at_ABCA6_5end|id=chr17:67114125..67114150,-|ontology_enrichment_celltype=CL:0000451!1.42e-23!10;CL:0000738!3.74e-23!140;CL:0000037!3.55e-20!172;CL:0000566!3.55e-20!172;CL:0002087!5.75e-20!119;CL:0000988!1.76e-19!182;CL:0000990!1.60e-18!8;CL:0002032!7.18e-18!165;CL:0000837!7.18e-18!165;CL:0002031!1.88e-17!124;CL:0000945!2.12e-17!24;CL:0000826!2.12e-17!24;CL:0002009!3.28e-12!65;CL:0000840!5.88e-12!5;CL:0001029!5.88e-12!5;CL:0002194!2.18e-11!63;CL:0000576!2.18e-11!63;CL:0000040!2.18e-11!63;CL:0000559!2.18e-11!63;CL:0000557!9.42e-11!71;CL:0000763!8.06e-10!112;CL:0000049!8.06e-10!112;CL:0000839!8.91e-10!70;CL:0000784!2.09e-09!3;CL:0000766!1.22e-08!76;CL:0000542!1.39e-08!53;CL:0000051!1.39e-08!53;CL:0000453!1.74e-08!5;CL:0000838!1.61e-07!52;CL:0000785!7.91e-07!2;CL:0000955!7.91e-07!2;CL:0000818!7.91e-07!2;CL:0000954!7.91e-07!2;CL:0000816!7.91e-07!2|ontology_enrichment_celltype_v019=CL:0000451;3.91e-30;10!CL:0000784;2.88e-28;3!CL:0000840;2.57e-25;5!CL:0000945;1.50e-24;24!CL:0000990;5.53e-17;8!CL:0000946;1.33e-10;1!CL:0000785;1.33e-10;1!CL:0000819;1.33e-10;1!CL:0000786;1.33e-10;1!CL:0000542;1.26e-07;53|ontology_enrichment_celltype_v019_2=CL:0000451,4.12e-30,10;CL:0000784,2.88e-28,3;CL:0000840,2.74e-25,5;CL:0001029,2.74e-25,5;CL:0000945,1.36e-24,24;CL:0000826,1.36e-24,24;CL:0000785,1.70e-19,2;CL:0000955,1.70e-19,2;CL:0000818,1.70e-19,2;CL:0000954,1.70e-19,2;CL:0000816,1.70e-19,2;CL:0000738,2.28e-17,136;CL:0000990,5.77e-17,8;CL:0000542,1.17e-16,53;CL:0000051,1.17e-16,53;CL:0002087,4.62e-16,115;CL:0000838,9.60e-14,52;CL:0000037,1.42e-13,168;CL:0000817,2.49e-13,3;CL:0002031,3.70e-13,120;CL:0000988,9.44e-13,177;CL:0002032,8.24e-11,161;CL:0000837,8.24e-11,161;CL:0000819,1.10e-10,1;CL:0000946,1.46e-10,1;CL:0000786,1.46e-10,1;CL:0000980,1.46e-10,1|ontology_enrichment_development_v019=CL:0000954;1.87e-19;2!CL:0000051;1.26e-07;53|ontology_enrichment_disease=DOID:0060058!4.38e-07!10|ontology_enrichment_disease_v019=DOID:0060058;1.59e-15;10!DOID:630;4.58e-11;1!DOID:0050177;4.58e-11;1!DOID:0050427;4.58e-11;1!DOID:12603;5.57e-11;1!DOID:0060073;1.33e-10;1!DOID:8675;1.33e-10;1|ontology_enrichment_disease_v019_2=DOID:0060058,1.42e-15,10;DOID:630,4.15e-11,1;DOID:0050177,4.15e-11,1;DOID:0050427,4.15e-11,1;DOID:12603,5.57e-11,1;DOID:0060073,1.10e-10,1;DOID:8675,1.10e-10,1|ontology_enrichment_uberon=UBERON:0002193!7.70e-13!112;UBERON:0002390!2.02e-12!102;UBERON:0003061!2.02e-12!102;UBERON:0002405!2.20e-10!115;UBERON:0004177!4.45e-09!7;UBERON:0002371!5.49e-09!80;UBERON:0002106!1.15e-08!3;UBERON:0004854!1.15e-08!3;UBERON:0009034!1.15e-08!3;UBERON:0002095!1.15e-08!3;UBERON:0004782!1.15e-08!3;UBERON:0003281!1.15e-08!3;UBERON:0009664!1.15e-08!3;UBERON:0002296!1.15e-08!3;UBERON:0005602!1.15e-08!3;UBERON:0001179!1.15e-08!3;UBERON:0006293!1.15e-08!3;UBERON:0001474!5.04e-08!86;UBERON:0000007!4.48e-07!2|ontology_enrichment_uberon_v019=UBERON:0000007;2.26e-20;2!UBERON:0003296;1.15e-10;4!UBERON:0010133;1.15e-10;4!UBERON:0002146;1.33e-10;1!UBERON:0005623;1.33e-10;1|ontology_enrichment_uberon_v019_2=UBERON:0000007,2.49e-20,2;UBERON:0002146,1.21e-10,1;UBERON:0005623,1.21e-10,1;UBERON:0003296,1.21e-10,4;UBERON:0010133,1.21e-10,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.0834742611579,22.0029579725855,21.9603079865165,0,0,0,0,0,0,0.46480320348181,5.2602616020346,0,0,0,0,0,0.647787332037959,0.257575567634187,0,0,0,0.232429036905685,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0.272906150057846,0,0.306083892370903,0.320929027076094,0,0,0,0,0.870627715885752,0,1.24564449799115,0,0,0.217188844705117,0,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0.661044872784862,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57002133020152,4.17911369518241,5.05240249971688,1.43094374583205,1.71598473234038,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.50311112940016,0,0,0,0,0,0,0,0,0,0,0,0,0.481764225311099,0.201799707191048,0,0,0.614481528616916,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23460 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=36 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc002jhx.1_5end | |||
|coexpression_cluster_id=C74 | |||
|description=CAGE_peak_4_at_ABCA6_5end | |||
|id=chr17:67114125..67114150,- | |||
|ontology_enrichment_celltype=CL:0000451!1.42e-23!10;CL:0000738!3.74e-23!140;CL:0000037!3.55e-20!172;CL:0000566!3.55e-20!172;CL:0002087!5.75e-20!119;CL:0000988!1.76e-19!182;CL:0000990!1.60e-18!8;CL:0002032!7.18e-18!165;CL:0000837!7.18e-18!165;CL:0002031!1.88e-17!124;CL:0000945!2.12e-17!24;CL:0000826!2.12e-17!24;CL:0002009!3.28e-12!65;CL:0000840!5.88e-12!5;CL:0001029!5.88e-12!5;CL:0002194!2.18e-11!63;CL:0000576!2.18e-11!63;CL:0000040!2.18e-11!63;CL:0000559!2.18e-11!63;CL:0000557!9.42e-11!71;CL:0000763!8.06e-10!112;CL:0000049!8.06e-10!112;CL:0000839!8.91e-10!70;CL:0000784!2.09e-09!3;CL:0000766!1.22e-08!76;CL:0000542!1.39e-08!53;CL:0000051!1.39e-08!53;CL:0000453!1.74e-08!5;CL:0000838!1.61e-07!52;CL:0000785!7.91e-07!2;CL:0000955!7.91e-07!2;CL:0000818!7.91e-07!2;CL:0000954!7.91e-07!2;CL:0000816!7.91e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000451;3.91e-30;10!CL:0000784;2.88e-28;3!CL:0000840;2.57e-25;5!CL:0000945;1.50e-24;24!CL:0000990;5.53e-17;8!CL:0000946;1.33e-10;1!CL:0000785;1.33e-10;1!CL:0000819;1.33e-10;1!CL:0000786;1.33e-10;1!CL:0000542;1.26e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000451,4.12e-30,10;CL:0000784,2.88e-28,3;CL:0000840,2.74e-25,5;CL:0001029,2.74e-25,5;CL:0000945,1.36e-24,24;CL:0000826,1.36e-24,24;CL:0000785,1.70e-19,2;CL:0000955,1.70e-19,2;CL:0000818,1.70e-19,2;CL:0000954,1.70e-19,2;CL:0000816,1.70e-19,2;CL:0000738,2.28e-17,136;CL:0000990,5.77e-17,8;CL:0000542,1.17e-16,53;CL:0000051,1.17e-16,53;CL:0002087,4.62e-16,115;CL:0000838,9.60e-14,52;CL:0000037,1.42e-13,168;CL:0000817,2.49e-13,3;CL:0002031,3.70e-13,120;CL:0000988,9.44e-13,177;CL:0002032,8.24e-11,161;CL:0000837,8.24e-11,161;CL:0000819,1.10e-10,1;CL:0000946,1.46e-10,1;CL:0000786,1.46e-10,1;CL:0000980,1.46e-10,1 | |||
|ontology_enrichment_development_v019=CL:0000954;1.87e-19;2!CL:0000051;1.26e-07;53 | |||
|ontology_enrichment_disease=DOID:0060058!4.38e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.59e-15;10!DOID:630;4.58e-11;1!DOID:0050177;4.58e-11;1!DOID:0050427;4.58e-11;1!DOID:12603;5.57e-11;1!DOID:0060073;1.33e-10;1!DOID:8675;1.33e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.42e-15,10;DOID:630,4.15e-11,1;DOID:0050177,4.15e-11,1;DOID:0050427,4.15e-11,1;DOID:12603,5.57e-11,1;DOID:0060073,1.10e-10,1;DOID:8675,1.10e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002193!7.70e-13!112;UBERON:0002390!2.02e-12!102;UBERON:0003061!2.02e-12!102;UBERON:0002405!2.20e-10!115;UBERON:0004177!4.45e-09!7;UBERON:0002371!5.49e-09!80;UBERON:0002106!1.15e-08!3;UBERON:0004854!1.15e-08!3;UBERON:0009034!1.15e-08!3;UBERON:0002095!1.15e-08!3;UBERON:0004782!1.15e-08!3;UBERON:0003281!1.15e-08!3;UBERON:0009664!1.15e-08!3;UBERON:0002296!1.15e-08!3;UBERON:0005602!1.15e-08!3;UBERON:0001179!1.15e-08!3;UBERON:0006293!1.15e-08!3;UBERON:0001474!5.04e-08!86;UBERON:0000007!4.48e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000007;2.26e-20;2!UBERON:0003296;1.15e-10;4!UBERON:0010133;1.15e-10;4!UBERON:0002146;1.33e-10;1!UBERON:0005623;1.33e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,2.49e-20,2;UBERON:0002146,1.21e-10,1;UBERON:0005623,1.21e-10,1;UBERON:0003296,1.21e-10,4;UBERON:0010133,1.21e-10,4 | |||
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|short_description=p4@ABCA6 | |||
}} |
Revision as of 15:16, 11 September 2013
Short description: | p4@ABCA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_ABCA6_5end |
Coexpression cluster: | C74_splenic_B_b_plasma_xeroderma_lymphoma_hairy |
Association with transcript: | 0bp_to_uc002jhx.1_5end |
EntrezGene: | ABCA6 |
HGNC: | 36 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
dendritic cell | 4.12e-30 | 10 |
plasmacytoid dendritic cell | 2.88e-28 | 3 |
immature conventional dendritic cell | 2.74e-25 | 5 |
common dendritic progenitor | 2.74e-25 | 5 |
lymphocyte of B lineage | 1.36e-24 | 24 |
pro-B cell | 1.36e-24 | 24 |
mature B cell | 1.70e-19 | 2 |
pre-B-II cell | 1.70e-19 | 2 |
transitional stage B cell | 1.70e-19 | 2 |
small pre-B-II cell | 1.70e-19 | 2 |
immature B cell | 1.70e-19 | 2 |
leukocyte | 2.28e-17 | 136 |
conventional dendritic cell | 5.77e-17 | 8 |
lymphocyte | 1.17e-16 | 53 |
common lymphoid progenitor | 1.17e-16 | 53 |
nongranular leukocyte | 4.62e-16 | 115 |
lymphoid lineage restricted progenitor cell | 9.60e-14 | 52 |
hematopoietic stem cell | 1.42e-13 | 168 |
precursor B cell | 2.49e-13 | 3 |
hematopoietic lineage restricted progenitor cell | 3.70e-13 | 120 |
hematopoietic cell | 9.44e-13 | 177 |
hematopoietic oligopotent progenitor cell | 8.24e-11 | 161 |
hematopoietic multipotent progenitor cell | 8.24e-11 | 161 |
B-1 B cell | 1.10e-10 | 1 |
antibody secreting cell | 1.46e-10 | 1 |
plasma cell | 1.46e-10 | 1 |
plasmablast | 1.46e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 2.49e-20 | 2 |
pulmonary valve | 1.21e-10 | 1 |
semi-lunar valve | 1.21e-10 | 1 |
gland of diencephalon | 1.21e-10 | 4 |
neuroendocrine gland | 1.21e-10 | 4 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.42e-15 | 10 |
genetic disease | 4.15e-11 | 1 |
monogenic disease | 4.15e-11 | 1 |
xeroderma pigmentosum | 4.15e-11 | 1 |
acute leukemia | 5.57e-11 | 1 |
lymphatic system cancer | 1.10e-10 | 1 |
lymphosarcoma | 1.10e-10 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.