FFCP PHASE1:Hg19::chr19:20349233..20349273,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1240|description=CAGE_peak_at_chr19:20349233..20349273,-|id=chr19:20349233..20349273,-|ontology_enrichment_celltype=CL:0002319!2.70e-08!25|ontology_enrichment_celltype_v019=CL:0002319;6.35e-09;25|ontology_enrichment_celltype_v019_2=CL:0002319,9.40e-09,25|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000924!1.30e-10!173;UBERON:0006601!1.30e-10!173;UBERON:0004121!9.78e-10!169;UBERON:0005743!2.00e-09!86;UBERON:0000073!3.43e-09!94;UBERON:0001016!3.43e-09!94;UBERON:0002346!1.01e-08!90;UBERON:0001017!1.40e-08!82;UBERON:0003075!8.69e-08!86;UBERON:0007284!8.69e-08!86;UBERON:0000153!2.30e-07!129;UBERON:0007811!2.30e-07!129|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.02e-10,171;UBERON:0000924,4.02e-10,171;UBERON:0006601,4.02e-10,171;UBERON:0001016,8.22e-09,89;UBERON:0001017,8.38e-09,81;UBERON:0002346,8.44e-09,86;UBERON:0010314,2.33e-08,132;UBERON:0003075,7.90e-08,82;UBERON:0007284,7.90e-08,82;UBERON:0010371,6.61e-07,104|phase1_expression=3.63356758541113,2.5692062866918,2.39622486963151,2.00146596706261,1.78784437770915,1.74467704820074,0,0.631719873426831,0.522371256399677,3.68600904752263,2.79120467188971,9.61142037372758,2.90143676051299,1.11389717664042,0.331397375727916,0.672325146451775,0,0,0.487932798790507,9.23407935575909,2.04000691244253,1.88072832886853,14.0255633694218,15.4668100332359,15.94391522854,0.534893840235659,0.492603536699674,0.708397031823113,1.18009283054671,1.53531759238885,1.08371286321253,2.75826367343678,2.409647350226,0.369754010166788,10.1482032760195,8.24581548427045,10.8632162553893,0,1.00272223735071,0.651032612147555,0,0.647787332037959,0.257575567634187,0,0.377875943688809,0,0.697287110717054,0,0,0,0.256160706529101,0,0,0,1.35426486594342,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0.217188844705117,0,0,0,0,0.425208599930087,0.628975936525128,0.336985893439485,0.300353785683013,0.32145117339416,0.285012743741249,0.99458338599545,0,3.51992488922645,3.27683166757279,3.55803701545422,2.13365111283254,2.00197993518006,5.17277195959035,5.2883589822789,3.81621501814146,3.41527781465669,1.76171156811282,2.29363936875137,0,5.04457706683382,14.7495087474043,2.75393678159366,1.57204305099666,2.46721798799411,2.17342444007882,1.62961133316795,0.946895611469467,5.84480185223734,0.334231370655521,1.47302953737419,1.32920336750173,3.5204502289452,0.768547918354051,0.780356085359269,0.986627427622057,2.76350017785848,1.73881851441031,3.85545064221357,3.47803076516627,5.22677619024884,0.793165398882963,1.91610246800961,2.06176467289578,3.28925599625354,1.27426165729639,5.20866763085135,1.90090408889675,1.20460095262218,2.17577238962511,4.99722906209383,1.18388626022008,1.64225599384209,2.01606743224732,1.33720097891754,2.75166367377318,2.43806866313962,0.670700859703636,2.42938867502708,1.44575660953827,1.50401373190767,0.869079113764942,3.9764297352555,0.486634870302636,9.73708616789899,3.1042115644759,5.53359149866694,1.96468613246569,0.364295288292542,1.85392221392215,0.649094787309367,0.522389211897802,0,0.476981248610684,0.571994910780128,0.371457501329565,0.993812036833525,0.860234595106124,1.73570250803797,0,0,1.37559020970034,1.25396979922086,4.39308490587859,4.98072767761394,9.70689777017544,2.81980521976403,2.28081631715554,2.68468263302986,4.77962004449629,0,8.75137337183982,8.53211615979445,13.288154697032,3.06633274931766,0,0.366403487860815,0,0,0.872188104285069,0.496971951695318,2.27934920996244,0.529636723252875,2.29469296599051,2.83734705758686,1.68203280042692,1.06748995729705,0.24666754841716,5.29058760179603,3.23305612967251,5.06731899651722,3.02714855289863,2.88087962239999,3.51482147750695,1.24864030732128,4.56377457235559,0.747243402759005,7.04606991862589,8.25552016277471,9.12930243564615,2.65400422631361,6.38738450021193,1.23990937410919,2.37600571456411,1.97813543422845,0.910161361938026,0.718618141816238,10.100166837244,7.75734823206178,8.31192346452549,1.75591048352335,2.45190236639216,1.20190447125277,5.33131260852099,8.9694817844431,0.640672166455702,1.05965950579781,5.10154863343484,2.26715564324566,1.8034837803194,2.60563598864226,5.56961896396179,2.72823614451356,4.29137416214995,1.84099797284599,0.646584227275248,4.61512470271599,5.54136540252021,3.22165125389926,2.12586938479627,2.18196896472668,3.72845974005705,68.427249138703,69.7106581371012,69.1353960073634,38.7692345757485,68.8835922890466,101.463705823081,3.12899064659632,0.643240938192885,1.38134921352481,3.25057549622385,1.44375896333917,0,0,0,0,0,0.237270619111097,0,0,0,5.90524363699719,4.20725321410337,3.2925920906512,0,0,0.982827216677626,0.590789906681404,53.4170350291727,1.10689594688802,6.34800898104545,0.768251997860379,0,0.90476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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1240 | |||
|description=CAGE_peak_at_chr19:20349233..20349273,- | |||
|id=chr19:20349233..20349273,- | |||
|ontology_enrichment_celltype=CL:0002319!2.70e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0002319;6.35e-09;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,9.40e-09,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000924!1.30e-10!173;UBERON:0006601!1.30e-10!173;UBERON:0004121!9.78e-10!169;UBERON:0005743!2.00e-09!86;UBERON:0000073!3.43e-09!94;UBERON:0001016!3.43e-09!94;UBERON:0002346!1.01e-08!90;UBERON:0001017!1.40e-08!82;UBERON:0003075!8.69e-08!86;UBERON:0007284!8.69e-08!86;UBERON:0000153!2.30e-07!129;UBERON:0007811!2.30e-07!129 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.02e-10,171;UBERON:0000924,4.02e-10,171;UBERON:0006601,4.02e-10,171;UBERON:0001016,8.22e-09,89;UBERON:0001017,8.38e-09,81;UBERON:0002346,8.44e-09,86;UBERON:0010314,2.33e-08,132;UBERON:0003075,7.90e-08,82;UBERON:0007284,7.90e-08,82;UBERON:0010371,6.61e-07,104 | |||
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| |||
|short_description=p@chr19:20349233..20349273,- | |||
}} |
Revision as of 19:38, 11 September 2013
Short description: | p@chr19:20349233..20349273, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:20349233..20349273, - |
Coexpression cluster: | C1240_testicular_iPS_HES3GFP_H9_teratocarcinoma_non_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 9.40e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 4.02e-10 | 171 |
ectoderm | 4.02e-10 | 171 |
presumptive ectoderm | 4.02e-10 | 171 |
nervous system | 8.22e-09 | 89 |
central nervous system | 8.38e-09 | 81 |
neurectoderm | 8.44e-09 | 86 |
structure with developmental contribution from neural crest | 2.33e-08 | 132 |
neural plate | 7.90e-08 | 82 |
presumptive neural plate | 7.90e-08 | 82 |
ecto-epithelium | 6.61e-07 | 104 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.