FFCP PHASE1:Hg19::chr1:14075865..14075896,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7799|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9347|TSSclassifier=S|UniProt=D6REL1,Q13029,Q5THJ1|association_with_transcript=0bp_to_ENST00000470057,NM_001007257_5end|description=CAGE_peak_3_at_PRDM2_5end|id=chr1:14075865..14075896,+|ontology_enrichment_celltype=CL:0000791!8.80e-07!18;CL:0000789!8.80e-07!18;CL:0002420!8.80e-07!18;CL:0002419!8.80e-07!18;CL:0000790!8.80e-07!18|ontology_enrichment_celltype_v019=CL:0000791;7.36e-07;18!CL:0000789;7.36e-07;18!CL:0002419;7.36e-07;18|ontology_enrichment_celltype_v019_2=CL:0000791,8.75e-07,18;CL:0000789,8.75e-07,18;CL:0002420,8.75e-07,18;CL:0002419,8.75e-07,18;CL:0000790,8.75e-07,18|ontology_enrichment_development_v019=CL:0000790;7.36e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.89e-21!115;UBERON:0001049!2.22e-15!57;UBERON:0005068!2.22e-15!57;UBERON:0006241!2.22e-15!57;UBERON:0007135!2.22e-15!57;UBERON:0001017!7.10e-14!82;UBERON:0002780!7.87e-14!41;UBERON:0001890!7.87e-14!41;UBERON:0006240!7.87e-14!41;UBERON:0002616!7.92e-14!59;UBERON:0005743!2.31e-13!86;UBERON:0003075!6.81e-13!86;UBERON:0007284!6.81e-13!86;UBERON:0000955!7.22e-13!69;UBERON:0006238!7.22e-13!69;UBERON:0003080!8.66e-13!42;UBERON:0000073!1.49e-12!94;UBERON:0001016!1.49e-12!94;UBERON:0001869!3.00e-12!32;UBERON:0002619!7.63e-12!22;UBERON:0001893!1.01e-11!34;UBERON:0002020!1.17e-11!34;UBERON:0003528!1.17e-11!34;UBERON:0002791!2.65e-11!33;UBERON:0002346!5.27e-11!90;UBERON:0001950!8.12e-11!20;UBERON:0000956!5.77e-10!25;UBERON:0000203!5.77e-10!25;UBERON:0003056!3.99e-09!61;UBERON:0000033!6.95e-08!123;UBERON:0000153!7.50e-08!129;UBERON:0007811!7.50e-08!129;UBERON:0004121!2.08e-07!169|ontology_enrichment_uberon_v019=UBERON:0002619;6.71e-12;22!UBERON:0001869;4.28e-11;32!UBERON:0001950;7.08e-11;20!UBERON:0003528;1.41e-10;34!UBERON:0002020;1.41e-10;34!UBERON:0002791;2.09e-10;32!UBERON:0001893;2.34e-10;34!UBERON:0002780;2.84e-10;41!UBERON:0001890;2.84e-10;41!UBERON:0000956;4.37e-10;25!UBERON:0000203;4.37e-10;25!UBERON:0000073;4.30e-09;53!UBERON:0002616;4.30e-09;53|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.37e-21,114;UBERON:0001049,2.30e-16,56;UBERON:0005068,2.30e-16,56;UBERON:0006241,2.30e-16,56;UBERON:0007135,2.30e-16,56;UBERON:0000073,1.17e-15,53;UBERON:0002616,1.17e-15,53;UBERON:0001017,1.45e-14,81;UBERON:0002780,7.76e-14,41;UBERON:0001890,7.76e-14,41;UBERON:0003080,7.76e-14,41;UBERON:0006240,7.76e-14,41;UBERON:0000955,1.22e-13,68;UBERON:0006238,1.22e-13,68;UBERON:0001016,1.34e-13,89;UBERON:0001869,2.97e-12,32;UBERON:0003075,4.01e-12,82;UBERON:0007284,4.01e-12,82;UBERON:0002619,7.54e-12,22;UBERON:0001893,1.00e-11,34;UBERON:0003528,1.16e-11,34;UBERON:0002020,1.16e-11,34;UBERON:0002791,3.74e-11,32;UBERON:0001950,8.03e-11,20;UBERON:0002346,2.78e-10,86;UBERON:0003056,4.16e-10,61;UBERON:0000956,5.72e-10,25;UBERON:0000203,5.72e-10,25;UBERON:0010371,3.47e-08,104|phase1_expression=1.09007027562334,3.42560838225573,2.11431606143957,0,0.446961094427288,0.872338524100369,5.06599756336621,1.26343974685366,2.08948502559871,1.22866968250754,1.39560233594486,2.18441372130172,4.22027165165526,2.97039247104112,2.98257638155124,3.36162573225888,1.80808358407193,1.46062018077475,1.46379839637152,3.20114750999649,2.65200898617529,1.88072832886853,3.14859585844162,1.64249310087461,2.38531015230125,3.66784347590166,4.51553241974702,4.01424984699764,5.11373559903575,14.2016877295969,11.9208414953379,0.919421224478927,1.50602959389125,2.21852406100073,0.774672005803016,1.56386155736164,2.64240395401362,3.87796785972314,8.22232234627581,8.68043482863407,3.58264758783879,3.56283032620878,3.60605794687861,2.32637182047304,1.51150377475524,3.63876091781724,1.62700325833979,2.46700732813095,2.78735733805593,3.45230870786581,1.5369642391746,1.6553756092201,3.44745680736619,3.22742341791913,2.70852973188684,1.50593871634084,1.36453075028923,2.24723484445085,1.83650335422542,2.56743221660875,1.91801137739712,1.9791078011203,0.598390972864896,3.40979800426155,2.61188314765726,1.70215567407342,3.73693349397345,0.75374599577023,1.0429658368404,4.56096573880745,6.65939452896706,2.57794345191295,2.21523671208619,3.38008458099107,2.97646019951061,3.56419697364239,6.29040334420373,4.6554836780867,8.35773050824817,3.42015292489498,3.77941686678271,4.38393969035121,3.51992488922645,5.46138611262132,3.55803701545422,1.70692089026603,3.60356388332411,6.32227683949932,3.30522436392431,0.954053754535364,11.9534723512984,15.2681669236444,10.7036503875064,1.32171328579026,2.80254281490768,0.526768169550154,15.1466522987651,10.2182798314783,11.719285442972,9.1952572464873,9.12582346574053,10.4158517261641,9.74133642039557,5.68193330114385,10.3112067616193,8.4182879941776,14.6234086433108,7.17311390463781,7.28332346335318,5.91976456573234,6.63240042686036,9.85330491499179,8.6006206633995,8.29376567078111,6.27213142829861,8.0449633315272,9.19729184644611,8.93431358254838,14.422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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7799 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9347 | |||
|TSSclassifier=S | |||
|UniProt=D6REL1,Q13029,Q5THJ1 | |||
|association_with_transcript=0bp_to_ENST00000470057,NM_001007257_5end | |||
|description=CAGE_peak_3_at_PRDM2_5end | |||
|id=chr1:14075865..14075896,+ | |||
|ontology_enrichment_celltype=CL:0000791!8.80e-07!18;CL:0000789!8.80e-07!18;CL:0002420!8.80e-07!18;CL:0002419!8.80e-07!18;CL:0000790!8.80e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;7.36e-07;18!CL:0000789;7.36e-07;18!CL:0002419;7.36e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.75e-07,18;CL:0000789,8.75e-07,18;CL:0002420,8.75e-07,18;CL:0002419,8.75e-07,18;CL:0000790,8.75e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;7.36e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002619;6.71e-12;22!UBERON:0001869;4.28e-11;32!UBERON:0001950;7.08e-11;20!UBERON:0003528;1.41e-10;34!UBERON:0002020;1.41e-10;34!UBERON:0002791;2.09e-10;32!UBERON:0001893;2.34e-10;34!UBERON:0002780;2.84e-10;41!UBERON:0001890;2.84e-10;41!UBERON:0000956;4.37e-10;25!UBERON:0000203;4.37e-10;25!UBERON:0000073;4.30e-09;53!UBERON:0002616;4.30e-09;53 | |||
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| |||
|short_description=p3@PRDM2 | |||
}} |
Revision as of 23:59, 11 September 2013
Short description: | p3@PRDM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PRDM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000470057, NM_001007257_5end |
EntrezGene: | PRDM2 |
HGNC: | 9347 |
UniProt: | D6REL1Q13029Q5THJ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.75e-07 | 18 |
alpha-beta T cell | 8.75e-07 | 18 |
immature T cell | 8.75e-07 | 18 |
mature T cell | 8.75e-07 | 18 |
immature alpha-beta T cell | 8.75e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.37e-21 | 114 |
neural tube | 2.30e-16 | 56 |
neural rod | 2.30e-16 | 56 |
future spinal cord | 2.30e-16 | 56 |
neural keel | 2.30e-16 | 56 |
regional part of nervous system | 1.17e-15 | 53 |
regional part of brain | 1.17e-15 | 53 |
central nervous system | 1.45e-14 | 81 |
regional part of forebrain | 7.76e-14 | 41 |
forebrain | 7.76e-14 | 41 |
anterior neural tube | 7.76e-14 | 41 |
future forebrain | 7.76e-14 | 41 |
brain | 1.22e-13 | 68 |
future brain | 1.22e-13 | 68 |
nervous system | 1.34e-13 | 89 |
cerebral hemisphere | 2.97e-12 | 32 |
neural plate | 4.01e-12 | 82 |
presumptive neural plate | 4.01e-12 | 82 |
regional part of cerebral cortex | 7.54e-12 | 22 |
telencephalon | 1.00e-11 | 34 |
brain grey matter | 1.16e-11 | 34 |
gray matter | 1.16e-11 | 34 |
regional part of telencephalon | 3.74e-11 | 32 |
neocortex | 8.03e-11 | 20 |
neurectoderm | 2.78e-10 | 86 |
pre-chordal neural plate | 4.16e-10 | 61 |
cerebral cortex | 5.72e-10 | 25 |
pallium | 5.72e-10 | 25 |
ecto-epithelium | 3.47e-08 | 104 |
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