FFCP PHASE1:Hg19::chr1:145414518..145414552,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=148738|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=4887|TSSclassifier=W|UniProt=Q6ZVN8|association_with_transcript=-229bp_to_AY372521_5end|coexpression_cluster_id=C5|description=CAGE_peak_3_at_HFE2_5end|id=chr1:145414518..145414552,+|ontology_enrichment_celltype=CL:0000181!3.39e-10!12;CL:0000417!3.39e-10!12;CL:0000668!3.39e-10!12;CL:0000414!3.39e-10!12;CL:0000412!3.39e-10!12;CL:0000182!3.39e-10!12;CL:0000764!1.75e-07!2;CL:0000765!1.75e-07!2;CL:0000050!1.75e-07!2;CL:0000038!1.75e-07!2;CL:0000558!1.75e-07!2;CL:0000547!1.75e-07!2;CL:0000549!1.75e-07!2;CL:0000550!1.75e-07!2;CL:0000552!1.75e-07!2;CL:0002253!2.25e-07!2|ontology_enrichment_celltype_v019=CL:0000182;2.00e-19;12|ontology_enrichment_celltype_v019_2=CL:0000182,2.00e-19,12|ontology_enrichment_development_v019=UBERON:0004161;5.29e-10;11!UBERON:0009497;1.31e-08;13!UBERON:0003104;4.43e-08;31|ontology_enrichment_disease=DOID:4074!1.87e-07!2;DOID:4905!1.87e-07!2;DOID:3498!1.87e-07!2|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!9.96e-17!19;UBERON:0006925!9.96e-17!19;UBERON:0008836!9.96e-17!19;UBERON:0008835!1.91e-14!22;UBERON:0003894!1.91e-14!22;UBERON:0009854!8.14e-14!23;UBERON:0007499!1.04e-12!25;UBERON:0009497!1.04e-12!25;UBERON:0000015!1.04e-12!25;UBERON:0002423!1.04e-12!25;UBERON:0006235!1.04e-12!25;UBERON:0004161!1.04e-12!25;UBERON:0005057!3.23e-12!26;UBERON:0009856!3.23e-12!26;UBERON:0002365!3.10e-10!31;UBERON:0002330!3.10e-10!31;UBERON:0000949!8.33e-10!45;UBERON:0002368!4.69e-09!35;UBERON:0003929!4.31e-08!54|ontology_enrichment_uberon_v019=UBERON:0002107;7.07e-33;19!UBERON:0006925;7.07e-33;19!UBERON:0002423;4.28e-25;25!UBERON:0002365;2.93e-20;31!UBERON:0002330;2.93e-20;31!UBERON:0002368;1.60e-17;33!UBERON:0000949;9.90e-13;43!UBERON:0005172;3.31e-09;52!UBERON:0005173;3.31e-09;52!UBERON:0002417;3.71e-07;58!UBERON:0000916;3.71e-07;58!UBERON:0002530;9.50e-07;57|ontology_enrichment_uberon_v019_2=UBERON:0002107,7.07e-33,19;UBERON:0006925,7.07e-33,19;UBERON:0008836,7.07e-33,19;UBERON:0008835,1.86e-28,22;UBERON:0003894,1.86e-28,22;UBERON:0009854,3.07e-27,23;UBERON:0007499,4.28e-25,25;UBERON:0009497,4.28e-25,25;UBERON:0000015,4.28e-25,25;UBERON:0002423,4.28e-25,25;UBERON:0006235,4.28e-25,25;UBERON:0004161,4.28e-25,25;UBERON:0009856,3.81e-24,26;UBERON:0002365,2.58e-20,31;UBERON:0002330,2.58e-20,31;UBERON:0002368,4.92e-18,35;UBERON:0000949,4.26e-14,45;UBERON:0003929,8.59e-12,54;UBERON:0005172,8.59e-12,54;UBERON:0005173,8.59e-12,54;UBERON:0002530,8.19e-11,59;UBERON:0002417,1.23e-10,60;UBERON:0000916,1.23e-10,60;UBERON:0005911,7.83e-08,82;UBERON:0005256,2.07e-07,122;UBERON:0001041,2.16e-07,87|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6755034821831,5.89696330006576,17.7236972004421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,2.88514832613622,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,4.33061483573184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.223676107892416,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.00864158080138,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p3@HFE2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=148738 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=4887 | |||
|TSSclassifier=W | |||
|UniProt=Q6ZVN8 | |||
|association_with_transcript=-229bp_to_AY372521_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_HFE2_5end | |||
|id=chr1:145414518..145414552,+ | |||
|ontology_enrichment_celltype=CL:0000181!3.39e-10!12;CL:0000417!3.39e-10!12;CL:0000668!3.39e-10!12;CL:0000414!3.39e-10!12;CL:0000412!3.39e-10!12;CL:0000182!3.39e-10!12;CL:0000764!1.75e-07!2;CL:0000765!1.75e-07!2;CL:0000050!1.75e-07!2;CL:0000038!1.75e-07!2;CL:0000558!1.75e-07!2;CL:0000547!1.75e-07!2;CL:0000549!1.75e-07!2;CL:0000550!1.75e-07!2;CL:0000552!1.75e-07!2;CL:0002253!2.25e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.00e-19;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.00e-19,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.29e-10;11!UBERON:0009497;1.31e-08;13!UBERON:0003104;4.43e-08;31 | |||
|ontology_enrichment_disease=DOID:4074!1.87e-07!2;DOID:4905!1.87e-07!2;DOID:3498!1.87e-07!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!9.96e-17!19;UBERON:0006925!9.96e-17!19;UBERON:0008836!9.96e-17!19;UBERON:0008835!1.91e-14!22;UBERON:0003894!1.91e-14!22;UBERON:0009854!8.14e-14!23;UBERON:0007499!1.04e-12!25;UBERON:0009497!1.04e-12!25;UBERON:0000015!1.04e-12!25;UBERON:0002423!1.04e-12!25;UBERON:0006235!1.04e-12!25;UBERON:0004161!1.04e-12!25;UBERON:0005057!3.23e-12!26;UBERON:0009856!3.23e-12!26;UBERON:0002365!3.10e-10!31;UBERON:0002330!3.10e-10!31;UBERON:0000949!8.33e-10!45;UBERON:0002368!4.69e-09!35;UBERON:0003929!4.31e-08!54 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;7.07e-33;19!UBERON:0006925;7.07e-33;19!UBERON:0002423;4.28e-25;25!UBERON:0002365;2.93e-20;31!UBERON:0002330;2.93e-20;31!UBERON:0002368;1.60e-17;33!UBERON:0000949;9.90e-13;43!UBERON:0005172;3.31e-09;52!UBERON:0005173;3.31e-09;52!UBERON:0002417;3.71e-07;58!UBERON:0000916;3.71e-07;58!UBERON:0002530;9.50e-07;57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,7.07e-33,19;UBERON:0006925,7.07e-33,19;UBERON:0008836,7.07e-33,19;UBERON:0008835,1.86e-28,22;UBERON:0003894,1.86e-28,22;UBERON:0009854,3.07e-27,23;UBERON:0007499,4.28e-25,25;UBERON:0009497,4.28e-25,25;UBERON:0000015,4.28e-25,25;UBERON:0002423,4.28e-25,25;UBERON:0006235,4.28e-25,25;UBERON:0004161,4.28e-25,25;UBERON:0009856,3.81e-24,26;UBERON:0002365,2.58e-20,31;UBERON:0002330,2.58e-20,31;UBERON:0002368,4.92e-18,35;UBERON:0000949,4.26e-14,45;UBERON:0003929,8.59e-12,54;UBERON:0005172,8.59e-12,54;UBERON:0005173,8.59e-12,54;UBERON:0002530,8.19e-11,59;UBERON:0002417,1.23e-10,60;UBERON:0000916,1.23e-10,60;UBERON:0005911,7.83e-08,82;UBERON:0005256,2.07e-07,122;UBERON:0001041,2.16e-07,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6755034821831,5.89696330006576,17.7236972004421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,2.88514832613622,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,4.33061483573184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.223676107892416,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.00864158080138,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@HFE2 | |||
}} |
Revision as of 00:04, 12 September 2013
Short description: | p3@HFE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_HFE2_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -229bp_to_AY372521_5end |
EntrezGene: | HFE2 |
HGNC: | 4887 |
UniProt: | Q6ZVN8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.00e-19 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 7.07e-33 | 19 |
digestive gland | 7.07e-33 | 19 |
liver bud | 7.07e-33 | 19 |
hepatic diverticulum | 1.86e-28 | 22 |
liver primordium | 1.86e-28 | 22 |
digestive tract diverticulum | 3.07e-27 | 23 |
epithelial sac | 4.28e-25 | 25 |
epithelium of foregut-midgut junction | 4.28e-25 | 25 |
anatomical boundary | 4.28e-25 | 25 |
hepatobiliary system | 4.28e-25 | 25 |
foregut-midgut junction | 4.28e-25 | 25 |
septum transversum | 4.28e-25 | 25 |
sac | 3.81e-24 | 26 |
exocrine gland | 2.58e-20 | 31 |
exocrine system | 2.58e-20 | 31 |
endocrine gland | 4.92e-18 | 35 |
endocrine system | 4.26e-14 | 45 |
gut epithelium | 8.59e-12 | 54 |
abdomen element | 8.59e-12 | 54 |
abdominal segment element | 8.59e-12 | 54 |
gland | 8.19e-11 | 59 |
abdominal segment of trunk | 1.23e-10 | 60 |
abdomen | 1.23e-10 | 60 |
endo-epithelium | 7.83e-08 | 82 |
trunk mesenchyme | 2.07e-07 | 122 |
foregut | 2.16e-07 | 87 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.