FFCP PHASE1:Hg19::chr1:156051843..156051877,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=92312|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=33482|TSSclassifier=S|UniProt=A1L020|association_with_transcript=-54bp_to_ENST00000532414,NM_001093725,uc001fnd.3_5end|coexpression_cluster_id=C1814|description=CAGE_peak_4_at_MEX3A_5end|id=chr1:156051843..156051877,-|ontology_enrichment_celltype=CL:0002319!8.75e-22!25;CL:0000133!8.03e-18!59;CL:0000221!3.88e-13!71;CL:0000047!6.13e-13!8;CL:0000095!1.40e-11!17;CL:0000123!1.40e-11!17;CL:0000333!9.63e-11!41;CL:0000540!3.59e-10!6;CL:0000031!3.59e-10!6;CL:0000404!3.59e-10!6;CL:0000128!1.31e-09!7;CL:0000126!1.31e-09!7;CL:0000127!1.31e-09!7;CL:0002453!1.31e-09!7;CL:0000243!2.70e-09!15;CL:0000125!2.70e-09!15;CL:0000030!2.70e-09!15;CL:0000339!2.70e-09!15;CL:0002322!7.06e-09!5;CL:0000039!7.18e-07!7;CL:0000586!7.18e-07!7|ontology_enrichment_celltype_v019=CL:0002319;2.49e-23;25!CL:0000540;1.35e-22;6!CL:0000404;1.35e-22;6!CL:0002321;1.97e-22;15!CL:0002322;2.32e-19;5!CL:0000333;4.33e-17;5!CL:0000047;1.73e-08;2!CL:0000123;2.60e-08;2!CL:0000242;2.60e-08;2|ontology_enrichment_celltype_v019_2=CL:0000047,2.71e-29,8;CL:0000133,1.58e-25,59;CL:0002319,2.71e-23,25;CL:0000540,1.58e-22,6;CL:0000031,1.58e-22,6;CL:0000404,1.58e-22,6;CL:0000221,5.25e-20,72;CL:0002322,2.25e-19,5;CL:0000333,5.97e-13,41;CL:0000242,2.80e-08,2|ontology_enrichment_development_v019=CL:0000031;1.35e-22;6!CL:0000133;4.80e-14;59!CL:0000221;1.08e-09;72|ontology_enrichment_disease=DOID:3095!2.84e-18!22;DOID:2994!2.84e-18!22;DOID:0050687!1.68e-11!143;DOID:171!1.79e-11!10;DOID:162!9.78e-09!235;DOID:14566!3.26e-08!239;DOID:305!8.10e-07!106|ontology_enrichment_disease_v019=DOID:3095;7.07e-21;22!DOID:2994;7.07e-21;22!DOID:171;2.73e-16;10!DOID:169;3.34e-14;6|ontology_enrichment_disease_v019_2=DOID:3095,5.32e-21,22;DOID:2994,5.32e-21,22;DOID:171,1.69e-16,10;DOID:169,2.62e-14,6;DOID:0050687,2.79e-08,143|ontology_enrichment_uberon=UBERON:0000073!1.38e-08!94;UBERON:0001016!1.38e-08!94;UBERON:0000013!5.45e-08!5;UBERON:0002410!5.45e-08!5;UBERON:0000924!1.92e-07!173;UBERON:0006601!1.92e-07!173;UBERON:0007625!6.59e-07!11|ontology_enrichment_uberon_v019=UBERON:0000013;4.33e-17;5!UBERON:0002410;4.33e-17;5!UBERON:0000922;1.27e-12;49!UBERON:0000010;2.22e-09;8!UBERON:0002050;5.98e-07;5!UBERON:0005423;5.98e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0000013,3.23e-17,5;UBERON:0002410,3.23e-17,5;UBERON:0001016,3.13e-12,89;UBERON:0000010,1.90e-09,8;UBERON:0004121,1.60e-08,171;UBERON:0000924,1.60e-08,171;UBERON:0006601,1.60e-08,171;UBERON:0001017,1.18e-07,81|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10808952269109,0.612002073732759,0.940364164434263,0.85870796139317,1.23186982565596,1.63205431473244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22895262313288,0.886917589850256,0.43917392846563,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0.366403487860815,0,0,0,0,0.12663051166458,0,0,0,0,1.06748995729705,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,6.09868530647977,8.61443494089654,8.48215782947484,7.46359596110667,6.81266297364197,6.56959246336494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,1.73895607462615,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,5.33598710867173,5.20559415430487,8.50617694055465,9.38091085872353,7.01732626818479,0,0,0,0.36807447515742,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0,0,0,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0.170093705276516,0,0,0,0.501689773854853,0,0,0,0,0,0.512900250232778,0.328014645699706,0.325378394664303,0,0.183138929636687,0.577566499444116,0,0,0,0.386682873168488,0,0,0,0.107420244868274,0.290033387828457,0,0.356128142586949,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70918513803957,0,0,0.185803175125719,0.432807638929335,0,0.159426272728822,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,0,0,0.242721043499027,0,0,0,0,0,0,0,0,0,1.47787785689595,0,0,0.251932747854276,0.306806047506464,0,0,0,0.179021174675609,0,0,0,0,0,0,5.98841394003583,0,0,0,0,0.254253650292766,0,0.689486746482929,0,1.21537496453305,0,0,0,0,0,0,0,0,0,0,0,0.359030577639089,0.217294743844016,0,0,0,0,0,0,0.225595660617181,0,0.167821586975843,0,0,0,0,0.141353071433941,1.29833183845255,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,11.0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=92312 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33482 | |||
|TSSclassifier=S | |||
|UniProt=A1L020 | |||
|association_with_transcript=-54bp_to_ENST00000532414,NM_001093725,uc001fnd.3_5end | |||
|coexpression_cluster_id=C1814 | |||
|description=CAGE_peak_4_at_MEX3A_5end | |||
|id=chr1:156051843..156051877,- | |||
|ontology_enrichment_celltype=CL:0002319!8.75e-22!25;CL:0000133!8.03e-18!59;CL:0000221!3.88e-13!71;CL:0000047!6.13e-13!8;CL:0000095!1.40e-11!17;CL:0000123!1.40e-11!17;CL:0000333!9.63e-11!41;CL:0000540!3.59e-10!6;CL:0000031!3.59e-10!6;CL:0000404!3.59e-10!6;CL:0000128!1.31e-09!7;CL:0000126!1.31e-09!7;CL:0000127!1.31e-09!7;CL:0002453!1.31e-09!7;CL:0000243!2.70e-09!15;CL:0000125!2.70e-09!15;CL:0000030!2.70e-09!15;CL:0000339!2.70e-09!15;CL:0002322!7.06e-09!5;CL:0000039!7.18e-07!7;CL:0000586!7.18e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002319;2.49e-23;25!CL:0000540;1.35e-22;6!CL:0000404;1.35e-22;6!CL:0002321;1.97e-22;15!CL:0002322;2.32e-19;5!CL:0000333;4.33e-17;5!CL:0000047;1.73e-08;2!CL:0000123;2.60e-08;2!CL:0000242;2.60e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.71e-29,8;CL:0000133,1.58e-25,59;CL:0002319,2.71e-23,25;CL:0000540,1.58e-22,6;CL:0000031,1.58e-22,6;CL:0000404,1.58e-22,6;CL:0000221,5.25e-20,72;CL:0002322,2.25e-19,5;CL:0000333,5.97e-13,41;CL:0000242,2.80e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000031;1.35e-22;6!CL:0000133;4.80e-14;59!CL:0000221;1.08e-09;72 | |||
|ontology_enrichment_disease=DOID:3095!2.84e-18!22;DOID:2994!2.84e-18!22;DOID:0050687!1.68e-11!143;DOID:171!1.79e-11!10;DOID:162!9.78e-09!235;DOID:14566!3.26e-08!239;DOID:305!8.10e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:3095;7.07e-21;22!DOID:2994;7.07e-21;22!DOID:171;2.73e-16;10!DOID:169;3.34e-14;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.32e-21,22;DOID:2994,5.32e-21,22;DOID:171,1.69e-16,10;DOID:169,2.62e-14,6;DOID:0050687,2.79e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.38e-08!94;UBERON:0001016!1.38e-08!94;UBERON:0000013!5.45e-08!5;UBERON:0002410!5.45e-08!5;UBERON:0000924!1.92e-07!173;UBERON:0006601!1.92e-07!173;UBERON:0007625!6.59e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;4.33e-17;5!UBERON:0002410;4.33e-17;5!UBERON:0000922;1.27e-12;49!UBERON:0000010;2.22e-09;8!UBERON:0002050;5.98e-07;5!UBERON:0005423;5.98e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,3.23e-17,5;UBERON:0002410,3.23e-17,5;UBERON:0001016,3.13e-12,89;UBERON:0000010,1.90e-09,8;UBERON:0004121,1.60e-08,171;UBERON:0000924,1.60e-08,171;UBERON:0006601,1.60e-08,171;UBERON:0001017,1.18e-07,81 | |||
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|short_description=p4@MEX3A | |||
}} |
Revision as of 00:49, 12 September 2013
Short description: | p4@MEX3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_MEX3A_5end |
Coexpression cluster: | C1814_occipital_temporal_duodenum_parietal_Neurons_brain_Neural |
Association with transcript: | -54bp_to_ENST00000532414, NM_001093725, uc001fnd.3_5end |
EntrezGene: | MEX3A |
HGNC: | 33482 |
UniProt: | A1L020 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.71e-29 | 8 |
neurectodermal cell | 1.58e-25 | 59 |
neural cell | 2.71e-23 | 25 |
neuron | 1.58e-22 | 6 |
neuroblast | 1.58e-22 | 6 |
electrically signaling cell | 1.58e-22 | 6 |
ectodermal cell | 5.25e-20 | 72 |
embryonic stem cell | 2.25e-19 | 5 |
migratory neural crest cell | 5.97e-13 | 41 |
Merkel cell | 2.80e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 3.23e-17 | 5 |
autonomic nervous system | 3.23e-17 | 5 |
nervous system | 3.13e-12 | 89 |
peripheral nervous system | 1.90e-09 | 8 |
ectoderm-derived structure | 1.60e-08 | 171 |
ectoderm | 1.60e-08 | 171 |
presumptive ectoderm | 1.60e-08 | 171 |
central nervous system | 1.18e-07 | 81 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.32e-21 | 22 |
germ cell cancer | 5.32e-21 | 22 |
neuroectodermal tumor | 1.69e-16 | 10 |
neuroendocrine tumor | 2.62e-14 | 6 |
cell type cancer | 2.79e-08 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.