FFCP PHASE1:Hg19::chr1:17380600..17380615,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6390|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10681|TSSclassifier=S|UniProt=P21912|association_with_transcript=49bp_to_ENST00000375499,NM_003000,uc001bae.2_5end|description=CAGE_peak_2_at_SDHB_5end|id=chr1:17380600..17380615,-|ontology_enrichment_celltype=CL:0000548!6.98e-27!679;CL:0000004!6.98e-27!679;CL:0000255!6.98e-27!679;CL:0000012!1.97e-26!682;CL:0002194!8.77e-26!63;CL:0000576!8.77e-26!63;CL:0000040!8.77e-26!63;CL:0000559!8.77e-26!63;CL:0002009!1.34e-24!65;CL:0000063!2.51e-22!578;CL:0000860!8.73e-22!45;CL:0002057!8.01e-21!42;CL:0000766!1.19e-20!76;CL:0000839!3.54e-19!70;CL:0000557!3.93e-19!71;CL:0000144!1.94e-17!625;CL:0002371!8.74e-17!591;CL:0000763!1.77e-16!112;CL:0000049!1.77e-16!112;CL:0000003!3.09e-15!722;CL:0000066!1.03e-10!254;CL:0000048!4.33e-09!430;CL:0000723!8.67e-09!436;CL:0000222!1.42e-08!119;CL:0002087!4.17e-08!119;CL:0000034!6.04e-08!444;CL:0000115!2.02e-07!35;CL:0000220!2.44e-07!246;CL:0002321!4.45e-07!248;CL:0002032!7.98e-07!165;CL:0000837!7.98e-07!165|ontology_enrichment_celltype_v019=CL:0000473;1.14e-16;39!CL:0000234;1.14e-16;39!CL:0000860;2.78e-16;33!CL:0002057;2.78e-16;33!CL:0000576;1.04e-13;48!CL:0000766;1.55e-09;69!CL:0000115;8.58e-07;36|ontology_enrichment_celltype_v019_2=CL:0000473,1.89e-24,48;CL:0000234,1.89e-24,48;CL:0002194,2.21e-24,59;CL:0000576,2.21e-24,59;CL:0000040,2.21e-24,59;CL:0000559,2.21e-24,59;CL:0002009,3.39e-23,61;CL:0000860,7.98e-21,42;CL:0002057,7.98e-21,42;CL:0000766,2.85e-19,72;CL:0000839,8.22e-18,66;CL:0000557,9.08e-18,67;CL:0000763,3.07e-15,108;CL:0000049,3.07e-15,108;CL:0000066,6.26e-11,253;CL:0000222,1.27e-08,121;CL:0000048,3.43e-08,427;CL:0000723,6.51e-08,433;CL:0000115,8.44e-08,36;CL:0002087,3.24e-07,115;CL:0002321,3.63e-07,250;CL:0000034,4.03e-07,441|ontology_enrichment_development_v019=CL:0002057;1.94e-15;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000926!2.07e-18!448;UBERON:0004120!2.07e-18!448;UBERON:0006603!2.07e-18!448;UBERON:0002371!3.24e-17!80;UBERON:0003081!8.73e-17!216;UBERON:0002405!1.63e-16!115;UBERON:0001474!4.59e-16!86;UBERON:0002193!8.03e-14!112;UBERON:0002390!8.79e-14!102;UBERON:0003061!8.79e-14!102;UBERON:0002204!7.75e-12!167;UBERON:0004765!1.56e-11!101;UBERON:0001434!1.56e-11!101;UBERON:0000055!1.11e-07!69;UBERON:0001981!2.48e-07!60;UBERON:0007500!2.48e-07!60;UBERON:0004537!2.48e-07!60;UBERON:0006965!2.48e-07!60;UBERON:0001637!3.38e-07!42;UBERON:0003509!3.38e-07!42;UBERON:0004572!3.38e-07!42;UBERON:0002049!9.80e-07!79;UBERON:0007798!9.80e-07!79|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0003081,6.66e-16,203;UBERON:0002371,6.74e-16,76;UBERON:0001474,8.77e-15,82;UBERON:0000926,4.60e-14,315;UBERON:0004120,4.60e-14,315;UBERON:0006603,4.60e-14,315;UBERON:0002405,1.27e-13,93;UBERON:0004765,6.81e-13,90;UBERON:0002193,1.16e-12,108;UBERON:0002390,1.33e-12,98;UBERON:0003061,1.33e-12,98;UBERON:0002204,6.88e-10,167;UBERON:0001434,1.77e-09,100;UBERON:0000055,2.09e-07,68;UBERON:0001637,3.38e-07,42;UBERON:0003509,3.38e-07,42;UBERON:0004572,3.38e-07,42;UBERON:0007500,4.69e-07,59;UBERON:0001981,4.69e-07,59;UBERON:0004537,4.69e-07,59;UBERON:0006965,4.69e-07,59;UBERON:0003914,7.42e-07,117|phase1_expression=6.54042165374004,10.0627246228762,10.1487170949099,14.0102617694383,16.0905993993824,9.59572376510406,12.6649939084155,6.94891860769514,4.17897005119742,6.88055022204225,9.07141518364156,7.8638893966862,5.27533956456907,3.58922423584135,5.63375538737457,12.7741777825837,6.62963980826375,7.30310090387373,8.29485757943862,4.18611597461079,5.71201935483908,3.44800193625897,0.572471974262113,4.10623275218653,3.38965126905968,7.25927354605537,6.89644951379544,7.00525953691745,10.2274711980715,8.44424675813868,9.44378352228064,14.7107395916628,13.253060426243,10.3531122846701,20.2189393514587,22.6049079655,4.40400659002271,10.5259127621057,8.62341124121609,9.33146744078163,12.9870975059156,11.6601719766833,15.7121096256854,12.2134520574834,18.1380452970629,10.9162827534517,16.7348906572093,25.903576945375,22.2988587044475,14.9600044007518,16.3942852178624,11.5876292645407,19.6505038019873,16.1371170895957,20.3139729891513,11.1062980330137,15.8285567033551,13.9328560355952,12.2433556948361,19.2557416245656,17.2621023965741,14.8433085084022,12.3667467725412,13.2129672665135,11.6083695451434,20.9932533135722,13.0792672289071,15.3261685806613,21.3807996552283,17.5922964211144,15.7403870684676,15.0993830754902,16.7725065343669,11.6190407471568,12.9688622978677,15.5147397676198,11.2328631146495,9.76149803469791,8.67918168164233,15.1056754182862,12.3328339863436,10.4118567645841,0,2.18455444504853,2.66852776159066,2.13365111283254,1.20118796110804,2.29900975981793,1.32208974556972,3.81621501814146,2.27685187643779,2.93618594685469,3.44045905312706,3.96513985737078,3.92355994087075,2.63384084775077,1.7703879310245,1.17903228824749,2.2616164889946,2.34061093546949,1.955533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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6390 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10681 | |||
|TSSclassifier=S | |||
|UniProt=P21912 | |||
|association_with_transcript=49bp_to_ENST00000375499,NM_003000,uc001bae.2_5end | |||
|description=CAGE_peak_2_at_SDHB_5end | |||
|id=chr1:17380600..17380615,- | |||
|ontology_enrichment_celltype=CL:0000548!6.98e-27!679;CL:0000004!6.98e-27!679;CL:0000255!6.98e-27!679;CL:0000012!1.97e-26!682;CL:0002194!8.77e-26!63;CL:0000576!8.77e-26!63;CL:0000040!8.77e-26!63;CL:0000559!8.77e-26!63;CL:0002009!1.34e-24!65;CL:0000063!2.51e-22!578;CL:0000860!8.73e-22!45;CL:0002057!8.01e-21!42;CL:0000766!1.19e-20!76;CL:0000839!3.54e-19!70;CL:0000557!3.93e-19!71;CL:0000144!1.94e-17!625;CL:0002371!8.74e-17!591;CL:0000763!1.77e-16!112;CL:0000049!1.77e-16!112;CL:0000003!3.09e-15!722;CL:0000066!1.03e-10!254;CL:0000048!4.33e-09!430;CL:0000723!8.67e-09!436;CL:0000222!1.42e-08!119;CL:0002087!4.17e-08!119;CL:0000034!6.04e-08!444;CL:0000115!2.02e-07!35;CL:0000220!2.44e-07!246;CL:0002321!4.45e-07!248;CL:0002032!7.98e-07!165;CL:0000837!7.98e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.14e-16;39!CL:0000234;1.14e-16;39!CL:0000860;2.78e-16;33!CL:0002057;2.78e-16;33!CL:0000576;1.04e-13;48!CL:0000766;1.55e-09;69!CL:0000115;8.58e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.89e-24,48;CL:0000234,1.89e-24,48;CL:0002194,2.21e-24,59;CL:0000576,2.21e-24,59;CL:0000040,2.21e-24,59;CL:0000559,2.21e-24,59;CL:0002009,3.39e-23,61;CL:0000860,7.98e-21,42;CL:0002057,7.98e-21,42;CL:0000766,2.85e-19,72;CL:0000839,8.22e-18,66;CL:0000557,9.08e-18,67;CL:0000763,3.07e-15,108;CL:0000049,3.07e-15,108;CL:0000066,6.26e-11,253;CL:0000222,1.27e-08,121;CL:0000048,3.43e-08,427;CL:0000723,6.51e-08,433;CL:0000115,8.44e-08,36;CL:0002087,3.24e-07,115;CL:0002321,3.63e-07,250;CL:0000034,4.03e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.94e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019= | |||
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| |||
|short_description=p2@SDHB | |||
}} |
Revision as of 01:52, 12 September 2013
Short description: | p2@SDHB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SDHB_5end |
Coexpression cluster: | NA |
Association with transcript: | 49bp_to_ENST00000375499, NM_003000, uc001bae.2_5end |
EntrezGene: | SDHB |
HGNC: | 10681 |
UniProt: | P21912 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.89e-24 | 48 |
phagocyte | 1.89e-24 | 48 |
monopoietic cell | 2.21e-24 | 59 |
monocyte | 2.21e-24 | 59 |
monoblast | 2.21e-24 | 59 |
promonocyte | 2.21e-24 | 59 |
macrophage dendritic cell progenitor | 3.39e-23 | 61 |
classical monocyte | 7.98e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.98e-21 | 42 |
myeloid leukocyte | 2.85e-19 | 72 |
myeloid lineage restricted progenitor cell | 8.22e-18 | 66 |
granulocyte monocyte progenitor cell | 9.08e-18 | 67 |
myeloid cell | 3.07e-15 | 108 |
common myeloid progenitor | 3.07e-15 | 108 |
epithelial cell | 6.26e-11 | 253 |
mesodermal cell | 1.27e-08 | 121 |
multi fate stem cell | 3.43e-08 | 427 |
somatic stem cell | 6.51e-08 | 433 |
endothelial cell | 8.44e-08 | 36 |
nongranular leukocyte | 3.24e-07 | 115 |
embryonic cell | 3.63e-07 | 250 |
stem cell | 4.03e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 6.66e-16 | 203 |
bone marrow | 6.74e-16 | 76 |
bone element | 8.77e-15 | 82 |
mesoderm | 4.60e-14 | 315 |
mesoderm-derived structure | 4.60e-14 | 315 |
presumptive mesoderm | 4.60e-14 | 315 |
immune system | 1.27e-13 | 93 |
skeletal element | 6.81e-13 | 90 |
hemolymphoid system | 1.16e-12 | 108 |
hematopoietic system | 1.33e-12 | 98 |
blood island | 1.33e-12 | 98 |
musculoskeletal system | 6.88e-10 | 167 |
skeletal system | 1.77e-09 | 100 |
vessel | 2.09e-07 | 68 |
artery | 3.38e-07 | 42 |
arterial blood vessel | 3.38e-07 | 42 |
arterial system | 3.38e-07 | 42 |
epithelial tube open at both ends | 4.69e-07 | 59 |
blood vessel | 4.69e-07 | 59 |
blood vasculature | 4.69e-07 | 59 |
vascular cord | 4.69e-07 | 59 |
epithelial tube | 7.42e-07 | 117 |
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