FFCP PHASE1:Hg19::chr1:24645921..24645973,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57822|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25839|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000530984_5end|coexpression_cluster_id=C683|description=CAGE_peak_2_at_GRHL3_5end|id=chr1:24645921..24645973,+|ontology_enrichment_celltype=CL:0002076!9.53e-24!43;CL:0000066!2.67e-21!254;CL:0000223!1.08e-17!59;CL:0002251!1.62e-12!21;CL:0002368!4.80e-12!13;CL:0002159!1.97e-08!13;CL:0000039!2.09e-08!7;CL:0000586!2.09e-08!7;CL:0002202!2.26e-08!9;CL:0002632!2.26e-08!9;CL:0000622!2.39e-07!5|ontology_enrichment_celltype_v019=CL:0002076;4.57e-20;42!CL:0002368;1.27e-14;13!CL:0002251;1.79e-12;20!CL:0000622;2.02e-11;5!CL:0002202;4.31e-11;9!CL:0002632;4.31e-11;9!CL:0000039;5.46e-10;7!CL:0000586;5.46e-10;7!CL:0002322;1.05e-09;5!CL:0000154;1.97e-09;6!CL:0002159;5.29e-09;14!CL:0000244;9.37e-09;4!CL:0000731;9.37e-09;4!CL:0002623;1.94e-07;3!CL:0002328;2.95e-07;3!CL:0002077;3.09e-07;34!CL:0000307;4.65e-07;3!CL:0002621;4.95e-07;3|ontology_enrichment_celltype_v019_2=CL:0002076,1.38e-26,42;CL:0000223,2.57e-20,58;CL:0000066,8.88e-20,253;CL:0002368,1.38e-14,13;CL:0002251,2.04e-12,20;CL:0000622,2.11e-11,5;CL:0002202,5.44e-11,9;CL:0002632,5.44e-11,9;CL:0000039,4.06e-10,7;CL:0000586,4.06e-10,7;CL:0002322,1.39e-09,5;CL:0000154,2.05e-09,6;CL:0002159,5.52e-09,14;CL:0000244,8.46e-09,4;CL:0000731,8.46e-09,4;CL:0002077,6.64e-08,34;CL:0002623,2.16e-07,3;CL:0002328,2.80e-07,3;CL:0002621,4.19e-07,3;CL:0000068,6.51e-07,3;CL:0000069,6.51e-07,3;CL:0000307,6.51e-07,3;CL:0000377,6.51e-07,3|ontology_enrichment_development_v019=CL:0000223;6.19e-11;58!CL:0000377;4.65e-07;3|ontology_enrichment_disease=DOID:305!9.97e-11!106;DOID:1749!3.97e-10!14;DOID:0050687!2.34e-07!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!6.44e-16!169;UBERON:0000925!6.44e-16!169;UBERON:0006595!6.44e-16!169;UBERON:0001007!1.27e-11!155;UBERON:0001555!1.27e-11!155;UBERON:0007026!1.27e-11!155;UBERON:0000161!1.31e-11!35;UBERON:0001004!1.38e-11!72;UBERON:0001008!1.90e-10!45;UBERON:0004921!5.70e-10!129;UBERON:0004185!5.70e-10!129;UBERON:0000464!7.36e-10!104;UBERON:0006554!1.00e-09!44;UBERON:0000077!1.42e-09!130;UBERON:0000166!6.63e-09!21;UBERON:0000466!3.49e-08!126;UBERON:0000062!7.27e-08!511;UBERON:0005177!1.18e-07!107;UBERON:0000344!1.23e-07!12;UBERON:0007196!1.39e-07!14;UBERON:0001558!1.39e-07!14;UBERON:0000065!1.45e-07!53;UBERON:0000489!1.62e-07!32;UBERON:0000922!1.68e-07!612;UBERON:0000468!4.35e-07!659;UBERON:0005911!6.88e-07!82;UBERON:0005181!8.58e-07!35;UBERON:0000165!8.84e-07!28;UBERON:0000930!8.84e-07!28|ontology_enrichment_uberon_v019=UBERON:0000165;3.92e-10;28!UBERON:0007196;4.14e-10;15!UBERON:0001558;4.14e-10;15!UBERON:0000161;3.79e-09;19!UBERON:0000166;3.79e-09;19!UBERON:0000974;2.81e-08;6!UBERON:0000486;9.51e-08;12!UBERON:0001723;1.65e-07;3!UBERON:0001033;1.65e-07;3!UBERON:0003126;1.85e-07;7!UBERON:0001005;1.85e-07;7!UBERON:0004815;2.95e-07;3!UBERON:0002031;2.95e-07;3!UBERON:0005178;4.10e-07;34!UBERON:0002224;4.10e-07;34!UBERON:0001949;4.95e-07;3!UBERON:0000365;5.46e-07;5!UBERON:0005911;7.00e-07;36|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.95e-15,160;UBERON:0000925,5.95e-15,160;UBERON:0006595,5.95e-15,160;UBERON:0000161,1.51e-14,36;UBERON:0001004,2.96e-13,74;UBERON:0000166,1.61e-11,22;UBERON:0001007,3.90e-11,145;UBERON:0001555,3.90e-11,145;UBERON:0007026,3.90e-11,145;UBERON:0003102,2.29e-10,99;UBERON:0007196,4.92e-10,15;UBERON:0001558,4.92e-10,15;UBERON:0000165,1.29e-09,29;UBERON:0000930,1.29e-09,29;UBERON:0000065,3.60e-09,54;UBERON:0004921,1.36e-08,118;UBERON:0005178,1.02e-07,34;UBERON:0002224,1.02e-07,34;UBERON:0000153,1.20e-07,62;UBERON:0007811,1.20e-07,62;UBERON:0000072,1.37e-07,47;UBERON:0001723,2.03e-07,3;UBERON:0001033,2.03e-07,3;UBERON:0010056,2.03e-07,3;UBERON:0005181,2.07e-07,35;UBERON:0003126,2.33e-07,7;UBERON:0001005,2.33e-07,7;UBERON:0004815,2.80e-07,3;UBERON:0002031,2.80e-07,3;UBERON:0005911,3.89e-07,82;UBERON:0001008,4.12e-07,48;UBERON:0001949,4.19e-07,3;UBERON:0000365,5.05e-07,5;UBERON:0001041,7.08e-07,87|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0.251085279189606,0,0,0,0,0,0,5.51652734687356,2.71085326900425,8.50434223383612,0.0774672005803016,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.327447688744282,19.6719455677973,28.9211865371855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.624232346414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.41130388857231,4.90943017063502,2.86804595389004,1.09776335516636,1.19276791489337,2.20768491452085,1.86589899027667,6.05570042101508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57822 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25839 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000530984_5end | |||
|coexpression_cluster_id=C683 | |||
|description=CAGE_peak_2_at_GRHL3_5end | |||
|id=chr1:24645921..24645973,+ | |||
|ontology_enrichment_celltype=CL:0002076!9.53e-24!43;CL:0000066!2.67e-21!254;CL:0000223!1.08e-17!59;CL:0002251!1.62e-12!21;CL:0002368!4.80e-12!13;CL:0002159!1.97e-08!13;CL:0000039!2.09e-08!7;CL:0000586!2.09e-08!7;CL:0002202!2.26e-08!9;CL:0002632!2.26e-08!9;CL:0000622!2.39e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.57e-20;42!CL:0002368;1.27e-14;13!CL:0002251;1.79e-12;20!CL:0000622;2.02e-11;5!CL:0002202;4.31e-11;9!CL:0002632;4.31e-11;9!CL:0000039;5.46e-10;7!CL:0000586;5.46e-10;7!CL:0002322;1.05e-09;5!CL:0000154;1.97e-09;6!CL:0002159;5.29e-09;14!CL:0000244;9.37e-09;4!CL:0000731;9.37e-09;4!CL:0002623;1.94e-07;3!CL:0002328;2.95e-07;3!CL:0002077;3.09e-07;34!CL:0000307;4.65e-07;3!CL:0002621;4.95e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.38e-26,42;CL:0000223,2.57e-20,58;CL:0000066,8.88e-20,253;CL:0002368,1.38e-14,13;CL:0002251,2.04e-12,20;CL:0000622,2.11e-11,5;CL:0002202,5.44e-11,9;CL:0002632,5.44e-11,9;CL:0000039,4.06e-10,7;CL:0000586,4.06e-10,7;CL:0002322,1.39e-09,5;CL:0000154,2.05e-09,6;CL:0002159,5.52e-09,14;CL:0000244,8.46e-09,4;CL:0000731,8.46e-09,4;CL:0002077,6.64e-08,34;CL:0002623,2.16e-07,3;CL:0002328,2.80e-07,3;CL:0002621,4.19e-07,3;CL:0000068,6.51e-07,3;CL:0000069,6.51e-07,3;CL:0000307,6.51e-07,3;CL:0000377,6.51e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;6.19e-11;58!CL:0000377;4.65e-07;3 | |||
|ontology_enrichment_disease=DOID:305!9.97e-11!106;DOID:1749!3.97e-10!14;DOID:0050687!2.34e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!6.44e-16!169;UBERON:0000925!6.44e-16!169;UBERON:0006595!6.44e-16!169;UBERON:0001007!1.27e-11!155;UBERON:0001555!1.27e-11!155;UBERON:0007026!1.27e-11!155;UBERON:0000161!1.31e-11!35;UBERON:0001004!1.38e-11!72;UBERON:0001008!1.90e-10!45;UBERON:0004921!5.70e-10!129;UBERON:0004185!5.70e-10!129;UBERON:0000464!7.36e-10!104;UBERON:0006554!1.00e-09!44;UBERON:0000077!1.42e-09!130;UBERON:0000166!6.63e-09!21;UBERON:0000466!3.49e-08!126;UBERON:0000062!7.27e-08!511;UBERON:0005177!1.18e-07!107;UBERON:0000344!1.23e-07!12;UBERON:0007196!1.39e-07!14;UBERON:0001558!1.39e-07!14;UBERON:0000065!1.45e-07!53;UBERON:0000489!1.62e-07!32;UBERON:0000922!1.68e-07!612;UBERON:0000468!4.35e-07!659;UBERON:0005911!6.88e-07!82;UBERON:0005181!8.58e-07!35;UBERON:0000165!8.84e-07!28;UBERON:0000930!8.84e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;3.92e-10;28!UBERON:0007196;4.14e-10;15!UBERON:0001558;4.14e-10;15!UBERON:0000161;3.79e-09;19!UBERON:0000166;3.79e-09;19!UBERON:0000974;2.81e-08;6!UBERON:0000486;9.51e-08;12!UBERON:0001723;1.65e-07;3!UBERON:0001033;1.65e-07;3!UBERON:0003126;1.85e-07;7!UBERON:0001005;1.85e-07;7!UBERON:0004815;2.95e-07;3!UBERON:0002031;2.95e-07;3!UBERON:0005178;4.10e-07;34!UBERON:0002224;4.10e-07;34!UBERON:0001949;4.95e-07;3!UBERON:0000365;5.46e-07;5!UBERON:0005911;7.00e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.95e-15,160;UBERON:0000925,5.95e-15,160;UBERON:0006595,5.95e-15,160;UBERON:0000161,1.51e-14,36;UBERON:0001004,2.96e-13,74;UBERON:0000166,1.61e-11,22;UBERON:0001007,3.90e-11,145;UBERON:0001555,3.90e-11,145;UBERON:0007026,3.90e-11,145;UBERON:0003102,2.29e-10,99;UBERON:0007196,4.92e-10,15;UBERON:0001558,4.92e-10,15;UBERON:0000165,1.29e-09,29;UBERON:0000930,1.29e-09,29;UBERON:0000065,3.60e-09,54;UBERON:0004921,1.36e-08,118;UBERON:0005178,1.02e-07,34;UBERON:0002224,1.02e-07,34;UBERON:0000153,1.20e-07,62;UBERON:0007811,1.20e-07,62;UBERON:0000072,1.37e-07,47;UBERON:0001723,2.03e-07,3;UBERON:0001033,2.03e-07,3;UBERON:0010056,2.03e-07,3;UBERON:0005181,2.07e-07,35;UBERON:0003126,2.33e-07,7;UBERON:0001005,2.33e-07,7;UBERON:0004815,2.80e-07,3;UBERON:0002031,2.80e-07,3;UBERON:0005911,3.89e-07,82;UBERON:0001008,4.12e-07,48;UBERON:0001949,4.19e-07,3;UBERON:0000365,5.05e-07,5;UBERON:0001041,7.08e-07,87 | |||
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|short_description=p2@GRHL3 | |||
}} |
Revision as of 04:43, 12 September 2013
Short description: | p2@GRHL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_GRHL3_5end |
Coexpression cluster: | C683_esophagus_tongue_tonsil_Corneal_cervical_Esophageal_throat |
Association with transcript: | 0bp_to_ENST00000530984_5end |
EntrezGene: | GRHL3 |
HGNC: | 25839 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.38e-26 | 42 |
endodermal cell | 2.57e-20 | 58 |
epithelial cell | 8.88e-20 | 253 |
respiratory epithelial cell | 1.38e-14 | 13 |
epithelial cell of alimentary canal | 2.04e-12 | 20 |
acinar cell | 2.11e-11 | 5 |
epithelial cell of tracheobronchial tree | 5.44e-11 | 9 |
epithelial cell of lower respiratory tract | 5.44e-11 | 9 |
germ line cell | 4.06e-10 | 7 |
germ cell | 4.06e-10 | 7 |
embryonic stem cell | 1.39e-09 | 5 |
protein secreting cell | 2.05e-09 | 6 |
general ecto-epithelial cell | 5.52e-09 | 14 |
transitional epithelial cell | 8.46e-09 | 4 |
urothelial cell | 8.46e-09 | 4 |
ecto-epithelial cell | 6.64e-08 | 34 |
acinar cell of salivary gland | 2.16e-07 | 3 |
bronchial epithelial cell | 2.80e-07 | 3 |
gingival epithelial cell | 4.19e-07 | 3 |
duct epithelial cell | 6.51e-07 | 3 |
branched duct epithelial cell | 6.51e-07 | 3 |
tracheal epithelial cell | 6.51e-07 | 3 |
tracheoblast | 6.51e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.95e-15 | 160 |
endoderm | 5.95e-15 | 160 |
presumptive endoderm | 5.95e-15 | 160 |
orifice | 1.51e-14 | 36 |
respiratory system | 2.96e-13 | 74 |
oral opening | 1.61e-11 | 22 |
digestive system | 3.90e-11 | 145 |
digestive tract | 3.90e-11 | 145 |
primitive gut | 3.90e-11 | 145 |
surface structure | 2.29e-10 | 99 |
tracheobronchial tree | 4.92e-10 | 15 |
lower respiratory tract | 4.92e-10 | 15 |
mouth | 1.29e-09 | 29 |
stomodeum | 1.29e-09 | 29 |
respiratory tract | 3.60e-09 | 54 |
subdivision of digestive tract | 1.36e-08 | 118 |
thoracic cavity element | 1.02e-07 | 34 |
thoracic cavity | 1.02e-07 | 34 |
anterior region of body | 1.20e-07 | 62 |
craniocervical region | 1.20e-07 | 62 |
segment of respiratory tract | 1.37e-07 | 47 |
tongue | 2.03e-07 | 3 |
gustatory system | 2.03e-07 | 3 |
future tongue | 2.03e-07 | 3 |
thoracic segment organ | 2.07e-07 | 35 |
trachea | 2.33e-07 | 7 |
respiratory airway | 2.33e-07 | 7 |
lower respiratory tract epithelium | 2.80e-07 | 3 |
epithelium of bronchus | 2.80e-07 | 3 |
endo-epithelium | 3.89e-07 | 82 |
renal system | 4.12e-07 | 48 |
gingival epithelium | 4.19e-07 | 3 |
urothelium | 5.05e-07 | 5 |
foregut | 7.08e-07 | 87 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.