FFCP PHASE1:Hg19::chr2:128433086..128433111,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55679|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16084|TSSclassifier=S|UniProt=|association_with_transcript=-226bp_to_ENST00000409808_5end|description=CAGE_peak_3_at_LIMS2_5end|id=chr2:128433086..128433111,-|ontology_enrichment_celltype=CL:0000213!4.23e-07!57;CL:0000215!4.23e-07!57|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0002078,4.21e-07,45|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!5.20e-28!115;UBERON:0000477!5.43e-16!286;UBERON:0004111!1.01e-15!241;UBERON:0000468!2.85e-15!659;UBERON:0000025!1.83e-14!194;UBERON:0000467!3.42e-13!625;UBERON:0000480!5.54e-13!626;UBERON:0001049!1.30e-11!57;UBERON:0005068!1.30e-11!57;UBERON:0006241!1.30e-11!57;UBERON:0007135!1.30e-11!57;UBERON:0000062!6.15e-11!511;UBERON:0000955!1.94e-10!69;UBERON:0006238!1.94e-10!69;UBERON:0000475!2.52e-10!365;UBERON:0002616!2.56e-10!59;UBERON:0005743!3.08e-10!86;UBERON:0001017!3.18e-10!82;UBERON:0000483!5.76e-10!309;UBERON:0000119!1.06e-09!312;UBERON:0003075!1.55e-09!86;UBERON:0007284!1.55e-09!86;UBERON:0000481!5.23e-09!347;UBERON:0004872!6.98e-09!84;UBERON:0003080!7.17e-09!42;UBERON:0002780!2.31e-08!41;UBERON:0001890!2.31e-08!41;UBERON:0006240!2.31e-08!41;UBERON:0002346!2.39e-08!90;UBERON:0000055!3.85e-08!69;UBERON:0000073!8.25e-08!94;UBERON:0001016!8.25e-08!94;UBERON:0003914!2.23e-07!118;UBERON:0002020!2.58e-07!34;UBERON:0003528!2.58e-07!34;UBERON:0001981!3.26e-07!60;UBERON:0007500!3.26e-07!60;UBERON:0004537!3.26e-07!60;UBERON:0006965!3.26e-07!60;UBERON:0001893!5.05e-07!34;UBERON:0002049!6.18e-07!79;UBERON:0007798!6.18e-07!79;UBERON:0002791!7.56e-07!33|ontology_enrichment_uberon_v019=UBERON:0007023;1.23e-08;114|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.77e-34,114;UBERON:0004111,4.68e-13,240;UBERON:0000025,3.42e-11,192;UBERON:0001049,2.20e-10,56;UBERON:0005068,2.20e-10,56;UBERON:0006241,2.20e-10,56;UBERON:0007135,2.20e-10,56;UBERON:0000073,3.81e-09,53;UBERON:0002616,3.81e-09,53;UBERON:0000955,1.08e-08,68;UBERON:0006238,1.08e-08,68;UBERON:0010314,1.34e-08,132;UBERON:0001017,3.98e-08,81;UBERON:0002780,7.88e-08,41;UBERON:0001890,7.88e-08,41;UBERON:0003080,7.88e-08,41;UBERON:0006240,7.88e-08,41;UBERON:0004457,3.33e-07,12;UBERON:0000042,3.33e-07,12;UBERON:0003075,5.18e-07,82;UBERON:0007284,5.18e-07,82;UBERON:0003528,6.31e-07,34;UBERON:0002020,6.31e-07,34|phase1_expression=7.08545679155171,7.70761886007539,7.3296290129905,8.00586386825043,11.1740273606822,6.97870819280295,0,0,0,2.21160542851358,2.79120467188971,0.873765488520689,1.31883489114227,0,0,1.34465029290355,1.20538905604795,1.46062018077475,1.46379839637152,0.123121058076788,0.204000691244253,0,0.286235987131057,0.273748850145768,0.251085279189606,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,3.32397245119126,3.81034450193269,2.17010870715852,0,0,0,0,0,0.242584061187816,0,0.411167888021826,0.309706370895104,0,0.512321413058201,0,0.689491361473237,0,1.35426486594342,0,0,0,0,0.320929027076094,0.639337125799041,0,0.199463657621632,0,0,0.56738522469114,1.86846674698672,0,0,0.217188844705117,5.44859552370032,0.736555271975129,1.26584954976354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66221330396589,4.69870898099936,1.50401373190767,1.73815822752988,3.9764297352555,3.40644409211845,0.189069634328136,0,0.263504357079378,8.71010852059789,0,0,0,0,0,0.238490624305342,0,0,1.39133685156694,3.4409383804245,1.73570250803797,3.39184765154406,6.71199097935849,1.37559020970034,4.38889429727302,2.58416759169329,7.1153252537342,7.02913286805807,0.805658634218294,3.04108842287405,1.46437234528902,2.57364156242108,2.43042584364528,1.87529429396568,2.46982309888787,1.35133776579987,0,0.949265659568129,0,0,0,0,17.8909902610315,0.506522046658319,1.32409180813219,0.860509862246441,0.709336764396714,2.80338800071154,6.4049397437823,5.18001851676036,0.622422070799533,0.269421344139376,0,0.302714855289863,0,0,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0,1.18800285728205,1.23633464639278,4.55080680969013,0,0.168336113954066,0,0.277064115484183,1.31693286264251,3.0648779579902,3.30523729594513,0.340296549480063,2.33206526395521,4.27114777637135,2.33125091275518,0,1.75189299705346,4.3798891807757,3.90845398296339,2.86919764810153,3.99491721160914,1.26216887122057,2.85354685791128,3.23292113637624,3.55009592516614,4.43309232201617,3.89989362314122,0,0,0,0.365921118388786,0,0.116193942869518,0.310983165046111,0.504641701751257,0,1.56449532329816,1.28648187638577,1.38134921352481,0,0,0.709840800239063,0.674338760312407,0.241011029883482,0.330881918197182,0.217879444092406,0.237270619111097,0.404493924480493,0.196221465125346,0.38474715694639,11.0723318193697,1.40241773803446,1.6462960453256,2.94017422771084,1.26755034821831,0.982827216677626,5.90789906681404,0,0.245976877086227,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55679 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-226bp_to_ENST00000409808_5end | |||
|description=CAGE_peak_3_at_LIMS2_5end | |||
|id=chr2:128433086..128433111,- | |||
|ontology_enrichment_celltype=CL:0000213!4.23e-07!57;CL:0000215!4.23e-07!57 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002078,4.21e-07,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.20e-28!115;UBERON:0000477!5.43e-16!286;UBERON:0004111!1.01e-15!241;UBERON:0000468!2.85e-15!659;UBERON:0000025!1.83e-14!194;UBERON:0000467!3.42e-13!625;UBERON:0000480!5.54e-13!626;UBERON:0001049!1.30e-11!57;UBERON:0005068!1.30e-11!57;UBERON:0006241!1.30e-11!57;UBERON:0007135!1.30e-11!57;UBERON:0000062!6.15e-11!511;UBERON:0000955!1.94e-10!69;UBERON:0006238!1.94e-10!69;UBERON:0000475!2.52e-10!365;UBERON:0002616!2.56e-10!59;UBERON:0005743!3.08e-10!86;UBERON:0001017!3.18e-10!82;UBERON:0000483!5.76e-10!309;UBERON:0000119!1.06e-09!312;UBERON:0003075!1.55e-09!86;UBERON:0007284!1.55e-09!86;UBERON:0000481!5.23e-09!347;UBERON:0004872!6.98e-09!84;UBERON:0003080!7.17e-09!42;UBERON:0002780!2.31e-08!41;UBERON:0001890!2.31e-08!41;UBERON:0006240!2.31e-08!41;UBERON:0002346!2.39e-08!90;UBERON:0000055!3.85e-08!69;UBERON:0000073!8.25e-08!94;UBERON:0001016!8.25e-08!94;UBERON:0003914!2.23e-07!118;UBERON:0002020!2.58e-07!34;UBERON:0003528!2.58e-07!34;UBERON:0001981!3.26e-07!60;UBERON:0007500!3.26e-07!60;UBERON:0004537!3.26e-07!60;UBERON:0006965!3.26e-07!60;UBERON:0001893!5.05e-07!34;UBERON:0002049!6.18e-07!79;UBERON:0007798!6.18e-07!79;UBERON:0002791!7.56e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.23e-08;114 | |||
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| |||
|short_description=p3@LIMS2 | |||
}} |
Revision as of 13:25, 12 September 2013
Short description: | p3@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LIMS2_5end |
Coexpression cluster: | NA |
Association with transcript: | -226bp_to_ENST00000409808_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meso-epithelial cell | 4.21e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.77e-34 | 114 |
anatomical conduit | 4.68e-13 | 240 |
tube | 3.42e-11 | 192 |
neural tube | 2.20e-10 | 56 |
neural rod | 2.20e-10 | 56 |
future spinal cord | 2.20e-10 | 56 |
neural keel | 2.20e-10 | 56 |
regional part of nervous system | 3.81e-09 | 53 |
regional part of brain | 3.81e-09 | 53 |
brain | 1.08e-08 | 68 |
future brain | 1.08e-08 | 68 |
structure with developmental contribution from neural crest | 1.34e-08 | 132 |
central nervous system | 3.98e-08 | 81 |
regional part of forebrain | 7.88e-08 | 41 |
forebrain | 7.88e-08 | 41 |
anterior neural tube | 7.88e-08 | 41 |
future forebrain | 7.88e-08 | 41 |
cavity lining | 3.33e-07 | 12 |
serous membrane | 3.33e-07 | 12 |
neural plate | 5.18e-07 | 82 |
presumptive neural plate | 5.18e-07 | 82 |
brain grey matter | 6.31e-07 | 34 |
gray matter | 6.31e-07 | 34 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.