FFCP PHASE1:Mm9::chr10:67000609..67000625,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13654|HGNC=|MCL_coexpression_id=7|UniProt=P08152,D3Z4X9,Q3U207,D3Z3K7|association_with_transcript=0bp_to_ENSMUST00000048289,ENSMUST00000105438,ENSMUST00000130933,ENSMUST00000169930,NM_010118,uc007flx.1,uc007fly.1_5end|description=CAGE_peak_1_at_Egr2_5end|id=chr10:67000609..67000625,+|ontology_enrichment_celltype=CL:0000063!2.36e-09!66|ontology_enrichment_celltype_v019_2=CL:0000791,3.64e-07,9;CL:0000789,3.64e-07,9;CL:0002420,3.64e-07,9;CL:0002419,3.64e-07,9;CL:0000790,3.64e-07,9;CL:0000738,4.43e-07,17;CL:0002087,4.43e-07,17;CL:0000838,8.57e-07,12|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.98e-10!48;UBERON:0003081!6.04e-10!88;UBERON:0002390!1.02e-09!45;UBERON:0003061!1.02e-09!45;UBERON:0006562!8.24e-09!24;UBERON:0001557!8.24e-09!24;UBERON:0001042!8.24e-09!24;UBERON:0008814!8.24e-09!24;UBERON:0009145!8.24e-09!24;UBERON:0003408!9.81e-09!24;UBERON:0002370!1.13e-08!23;UBERON:0000974!1.13e-08!23;UBERON:0004807!1.13e-08!23;UBERON:0005058!1.13e-08!23;UBERON:0003351!1.13e-08!23;UBERON:0009113!1.13e-08!23;UBERON:0003295!1.13e-08!23;UBERON:0009722!1.13e-08!23;UBERON:0005562!1.13e-08!23;UBERON:0007690!1.13e-08!23;UBERON:0004177!9.23e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.94e-10,48;UBERON:0002405,1.94e-10,48;UBERON:0002390,7.44e-10,45;UBERON:0003061,7.44e-10,45;UBERON:0006562,3.04e-09,24;UBERON:0001557,3.04e-09,24;UBERON:0001042,3.04e-09,24;UBERON:0008814,3.04e-09,24;UBERON:0009145,3.04e-09,24;UBERON:0003408,3.67e-09,24;UBERON:0002370,4.35e-09,23;UBERON:0000974,4.35e-09,23;UBERON:0004807,4.35e-09,23;UBERON:0005058,4.35e-09,23;UBERON:0003351,4.35e-09,23;UBERON:0009113,4.35e-09,23;UBERON:0003295,4.35e-09,23;UBERON:0009722,4.35e-09,23;UBERON:0005562,4.35e-09,23;UBERON:0007690,4.35e-09,23;UBERON:0003081,6.82e-09,87;UBERON:0004177,5.22e-08,29;UBERON:0005057,5.22e-08,29;UBERON:0000077,1.34e-07,35;UBERON:0000072,4.46e-07,27;UBERON:0007811,5.99e-07,36|phase1_expression=95.2885640273524,6.2815573375085,5.45999087267443,10.5862473957391,17.0304548181758,23.8388566114883,25.4637778249123,34.8632973292256,1158.97276075252,1114.38120981901,135.775848802825,79.7721589953364,14.8944635040149,18.0960233007325,0.999329285446988,1.61980213911861,0.699561878128147,8.83294063003066,8.22686601634433,4.66828616977833,7.313722952992,1.19149141441062,1.30599894569468,2.07990149631429,1.83527424853736,5.7423196411502,8.61523992318149,11.8509177977239,0.570070258369122,0.504060259519861,0.221730510655305,1.27006134691926,1.84519436275371,0,12.9983228888074,2.49351968037739,24.0919840389596,0,0.7813353445238,0,12.9410927366823,0,6.79714494243615,7.42791226055906,9.7321853970734,1.83546752161682,3.9119567217402,1.30815093828268,0.878744730937887,1.1665793944457,0,1.43752564364972,26.3418691510646,21.7608642603403,24.8709411365423,32.4146889405293,6.30373567865265,28.8776371675368,0.202316460859598,1.5869729378161,0,8.4711133017283,0.889294796111139,26.5470416598013,36.5880554149781,24.1563239081674,18.5752068521411,5.76327457982332,0,0,0,2.85650984403804,13.9147180799517,0,0,0,0,0,0,0,0,0,0.279182999001381,0,0.30559649555362,5.00868595305235,6.54909731675874,0.372798891650601,16.8869411133,13.9051670596485,15.0729534124872,0.860423876981386,1.3599426674155,0,0,0,3.08977724289854,22.8376632254597,14.8078022623635,13.7802434059033,206.335609972837,33.3648841277226,5.09610479413291,14.2213340630666,0.216491041011214,0.253359865475099,0,8.44960709921044,49.4571357766098,7.12522267511159,0,0.304465478312141,0.230615497256059,0.452167921657868,1.05829836422134,0.628332956648377,0.247194967734374,3.32578520915797,0,6.47067399789637,2.20841518460394,0.969750506270444,3.72783522436244,0,0,0.255457055208591,3.23500836165985,0.599902730993408,2.92261522268049,0.898743836428936,24.7050325522058,1.7591609295801,12.5153510538439,5.37002460393694,2.0778804455956,0.973447578406546,0.407357455401265,28.115975357881,152.391823335506,1.47309299120532,0,0.459804208866946,0.540186389416048,0.753524089178575,0.408218994907967,1.5373646434182,1.78033276663485,1.55222022443409,0.646703978798527,0,1.23165786914764,1.97276159184817,1.66828349535359,4.87553033131033,3.08673204611915,0,0,1.80143534980301,2.55747149456033,0.828503090142008,0.703578179943289,1.2604344302271,1.18372367792605,2.75469924446365,0.925602677324269,1.39520366850245,1.87791380979733,1.05088808130453,1.81015834904829,2.62667942526552,1.21603214318784,2.33919979880532,1.97595103761946,0.536825675041487,5.25724871410318,0.102904612379284,0.660837565967596,0.528901133327089,0,0.464473343720877,0.515469845288373,0.201683524623343,0,0.190225626112559,0.474529061544512,0.329397909448022,0.251335208800269,0.795825888164603,0.38992817423824,0,0.864552199498777,1.39398891278057,1.32767530667157,0.114248512609729,0,0,0.193952487167626,0.210407459670956,0.316182685621286,0.590440591918409,0.470996183524124,0.370191491765402,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0.744281895337007,1.87222603868736,0.757736633841335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| ||
|EntrezGene=13654 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|UniProt=P08152,D3Z4X9,Q3U207,D3Z3K7 | |||
|association_with_transcript=0bp_to_ENSMUST00000048289,ENSMUST00000105438,ENSMUST00000130933,ENSMUST00000169930,NM_010118,uc007flx.1,uc007fly.1_5end | |||
|description=CAGE_peak_1_at_Egr2_5end | |||
|id=chr10:67000609..67000625,+ | |||
|ontology_enrichment_celltype=CL:0000063!2.36e-09!66 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.64e-07,9;CL:0000789,3.64e-07,9;CL:0002420,3.64e-07,9;CL:0002419,3.64e-07,9;CL:0000790,3.64e-07,9;CL:0000738,4.43e-07,17;CL:0002087,4.43e-07,17;CL:0000838,8.57e-07,12 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.98e-10!48;UBERON:0003081!6.04e-10!88;UBERON:0002390!1.02e-09!45;UBERON:0003061!1.02e-09!45;UBERON:0006562!8.24e-09!24;UBERON:0001557!8.24e-09!24;UBERON:0001042!8.24e-09!24;UBERON:0008814!8.24e-09!24;UBERON:0009145!8.24e-09!24;UBERON:0003408!9.81e-09!24;UBERON:0002370!1.13e-08!23;UBERON:0000974!1.13e-08!23;UBERON:0004807!1.13e-08!23;UBERON:0005058!1.13e-08!23;UBERON:0003351!1.13e-08!23;UBERON:0009113!1.13e-08!23;UBERON:0003295!1.13e-08!23;UBERON:0009722!1.13e-08!23;UBERON:0005562!1.13e-08!23;UBERON:0007690!1.13e-08!23;UBERON:0004177!9.23e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.94e-10,48;UBERON:0002405,1.94e-10,48;UBERON:0002390,7.44e-10,45;UBERON:0003061,7.44e-10,45;UBERON:0006562,3.04e-09,24;UBERON:0001557,3.04e-09,24;UBERON:0001042,3.04e-09,24;UBERON:0008814,3.04e-09,24;UBERON:0009145,3.04e-09,24;UBERON:0003408,3.67e-09,24;UBERON:0002370,4.35e-09,23;UBERON:0000974,4.35e-09,23;UBERON:0004807,4.35e-09,23;UBERON:0005058,4.35e-09,23;UBERON:0003351,4.35e-09,23;UBERON:0009113,4.35e-09,23;UBERON:0003295,4.35e-09,23;UBERON:0009722,4.35e-09,23;UBERON:0005562,4.35e-09,23;UBERON:0007690,4.35e-09,23;UBERON:0003081,6.82e-09,87;UBERON:0004177,5.22e-08,29;UBERON:0005057,5.22e-08,29;UBERON:0000077,1.34e-07,35;UBERON:0000072,4.46e-07,27;UBERON:0007811,5.99e-07,36 | |||
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| |||
|short_description=p1@Egr2 | |||
}} | |||
Revision as of 17:11, 12 September 2013
| Short description: | p1@Egr2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Egr2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:7 |
| Association with transcript: | 0bp_to_ENSMUST00000048289, ENSMUST00000105438, ENSMUST00000130933, ENSMUST00000169930, NM_010118, uc007flx.1, uc007fly.1_5end |
| EntrezGene: | Egr2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mature alpha-beta T cell | 3.64e-07 | 9 |
| alpha-beta T cell | 3.64e-07 | 9 |
| immature T cell | 3.64e-07 | 9 |
| mature T cell | 3.64e-07 | 9 |
| immature alpha-beta T cell | 3.64e-07 | 9 |
| leukocyte | 4.43e-07 | 17 |
| nongranular leukocyte | 4.43e-07 | 17 |
| lymphoid lineage restricted progenitor cell | 8.57e-07 | 12 |
| Ontology term | p-value | n |
|---|---|---|
| hemolymphoid system | 1.94e-10 | 48 |
| immune system | 1.94e-10 | 48 |
| hematopoietic system | 7.44e-10 | 45 |
| blood island | 7.44e-10 | 45 |
| pharynx | 3.04e-09 | 24 |
| upper respiratory tract | 3.04e-09 | 24 |
| chordate pharynx | 3.04e-09 | 24 |
| pharyngeal arch system | 3.04e-09 | 24 |
| pharyngeal region of foregut | 3.04e-09 | 24 |
| gland of gut | 3.67e-09 | 24 |
| thymus | 4.35e-09 | 23 |
| neck | 4.35e-09 | 23 |
| respiratory system epithelium | 4.35e-09 | 23 |
| hemolymphoid system gland | 4.35e-09 | 23 |
| pharyngeal epithelium | 4.35e-09 | 23 |
| thymic region | 4.35e-09 | 23 |
| pharyngeal gland | 4.35e-09 | 23 |
| entire pharyngeal arch endoderm | 4.35e-09 | 23 |
| thymus primordium | 4.35e-09 | 23 |
| early pharyngeal endoderm | 4.35e-09 | 23 |
| lateral plate mesoderm | 6.82e-09 | 87 |
| hemopoietic organ | 5.22e-08 | 29 |
| immune organ | 5.22e-08 | 29 |
| mixed endoderm/mesoderm-derived structure | 1.34e-07 | 35 |
| segment of respiratory tract | 4.46e-07 | 27 |
| craniocervical region | 5.99e-07 | 36 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
