FFCP PHASE1:Hg19::chr2:241938053..241938088,+: Difference between revisions
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{{FFCP | 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54797,16.4209668357665,29.1048752099836,7.40236942849669,3.08009970976753,2.42467390852515,8.60666464712116,7.98384855710432,0,0.106727345877715,9.653614114347,2.0659796484515,7.03922827210363,10.3905227555436,4.06896178315738,9.98635161278269,4.6292972525936,0|short_description=p2@SNED1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=25992 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24696 | |||
|TSSclassifier=W | |||
|UniProt=Q8TER0,B5MEF5 | |||
|association_with_transcript=-166bp_to_ENST00000310397,ENST00000342631,ENST00000401884,ENST00000405547,NM_001080437,uc002wah.1_5end | |||
|coexpression_cluster_id=C1156 | |||
|description=CAGE_peak_2_at_SNED1_5end | |||
|id=chr2:241938053..241938088,+ | |||
|ontology_enrichment_celltype=CL:0000057!2.32e-13!75;CL:0000055!5.26e-12!180;CL:0000115!1.76e-08!35;CL:0002139!1.68e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002139;7.61e-08;24!CL:0000115;1.54e-07;36!CL:0000071;7.80e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.49e-13,76;CL:0000115,1.10e-08,36;CL:0002139,9.90e-08,24;CL:0000071,9.91e-07,18;CL:0002546,9.91e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;7.80e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.76e-11!659;UBERON:0000467!1.54e-09!625;UBERON:0002049!1.64e-09!79;UBERON:0007798!1.64e-09!79;UBERON:0007023!2.52e-09!115;UBERON:0000480!2.79e-09!626;UBERON:0000477!3.10e-09!286;UBERON:0000055!3.62e-08!69;UBERON:0000475!7.57e-08!365;UBERON:0000914!8.82e-08!83;UBERON:0002329!8.82e-08!83;UBERON:0003077!8.82e-08!83;UBERON:0003059!8.82e-08!83;UBERON:0007282!8.82e-08!83;UBERON:0009618!8.82e-08!83;UBERON:0007285!8.82e-08!83;UBERON:0001009!2.72e-07!113;UBERON:0001981!4.31e-07!60;UBERON:0007500!4.31e-07!60;UBERON:0004537!4.31e-07!60;UBERON:0006965!4.31e-07!60;UBERON:0004872!6.04e-07!84;UBERON:0004535!6.05e-07!110;UBERON:0004111!8.73e-07!241;UBERON:0004290!9.16e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;7.80e-07;18!UBERON:0001986;7.80e-07;18!UBERON:0004852;7.80e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,1.12e-09,78;UBERON:0007798,1.12e-09,78;UBERON:0007023,8.37e-09,114;UBERON:0000055,1.55e-08,68;UBERON:0001009,1.65e-07,112;UBERON:0007524,1.94e-07,73;UBERON:0000926,2.26e-07,315;UBERON:0004120,2.26e-07,315;UBERON:0006603,2.26e-07,315;UBERON:0007500,2.52e-07,59;UBERON:0001981,2.52e-07,59;UBERON:0004537,2.52e-07,59;UBERON:0006965,2.52e-07,59;UBERON:0004872,3.09e-07,83;UBERON:0004535,3.79e-07,109;UBERON:0003077,4.50e-07,72;UBERON:0007285,4.50e-07,72;UBERON:0002329,4.59e-07,71;UBERON:0003059,4.59e-07,71;UBERON:0007282,4.59e-07,71;UBERON:0004290,4.59e-07,71;UBERON:0009618,4.59e-07,71;UBERON:0007503,5.54e-07,78;UBERON:0004638,9.91e-07,18;UBERON:0001986,9.91e-07,18;UBERON:0004852,9.91e-07,18 | |||
|phase1_expression=8.72056220498672,6.85121676451146,5.07435854745496,7.00513088471913,6.25745532198203,4.36169262050184,2.53299878168311,5.05375898741465,24.5514490507848,0.737201809504527,0.697801167972428,0.218441372130172,0,27.3523640041703,45.0700430989965,4.70627602516243,3.01347264011988,2.92124036154949,3.41552959153355,4.43235809076436,11.8320400921667,5.95563970808367,0.572471974262113,1.64249310087461,0.251085279189606,0,0,0,2.36018566109342,0.383829398097213,6.03782880932696,0,0,0,0.0774672005803016,0,2.64240395401362,2.76997704265939,5.01361118675354,6.51032612147556,1.79132379391939,1.94336199611388,2.06060454107349,1.59938062657521,1.51150377475524,6.0646015296954,1.39457422143411,2.05583944010913,2.78735733805593,2.3015391385772,4.61089271752381,2.12834006899727,1.72372840368309,4.51839278508678,4.06279459783025,1.88242339542605,4.09359225086769,2.02251136000576,0.612167784741805,2.24650318953266,3.83602275479425,0.659702600373432,2.99195486432448,3.83602275479425,1.16083695451434,2.8369261234557,1.24564449799115,1.7587406567972,4.69334626578181,3.9093992046921,1.81619850790011,1.47311054395026,1.26584954976354,10.5627643155971,13.8192794977278,9.85395633889367,2.2465726229299,3.00353785683013,2.89306056054744,19.0958538306637,13.9241674039363,16.4397738388171,0,0.546138611262131,0,0,0,0,0,0,2.27685187643779,3.52342313622563,3.82273228125229,1.32171328579026,1.68152568894461,1.05353633910031,2.16380747125216,1.17903228824749,2.46721798799411,0.83593247695339,4.56291173287027,4.73447805734733,3.89653456815823,2.56244050835899,5.00830042707223,5.98141515375777,4.33286182024025,1.5370958367081,2.08094956095805,0.328875809207352,0.552700035571697,0,3.26230438956533,3.47803076516627,10.4535523804977,0.906474741580529,1.53288197440768,0.34362744548263,0.506039384039006,1.91139248594458,0.651083453856419,0,1.80690142893327,0.895906278080929,1.24930726552346,1.4206635122641,0.821127996921047,2.41928091869679,1.87208137048455,7.53086900190555,58.5136479153508,1.34140171940727,1.53435074212236,7.95166135246046,10.0267582127178,9.41502373245354,6.36228757640879,18.4921250715002,0.378139268656271,0.443458794925128,1.14185221401064,5.95954793514592,0,0,4.54366351116557,5.39802185627728,4.91944453919801,0.476981248610684,0,0,6.36039703573456,11.1830497363796,7.63709103536707,10.1755429546322,10.9069853414576,5.77747888074142,5.01587919688345,10.8535038851118,12.4518191940349,7.36385348082274,5.63961043952806,5.32190474002959,11.2268546472158,8.45625084795498,16.2028389576352,5.98308179503334,6.06229306090659,4.0540132973996,6.13266549863533,10.4419222552494,9.34328894045077,0,0,0,4.96971951695318,3.41902381494365,6.3556406790345,24.0942761429004,5.32002573297536,2.80338800071154,1.06748995729705,1.72667283892012,11.5148083097914,4.71487352243908,6.70193802765181,11.04909221808,32.8420276953599,7.26396438684769,11.8620829195522,4.56377457235559,7.47243402759005,2.23125547423153,3.0755859429945,2.52811452064047,9.1869377064702,13.1432719523592,26.451399980996,5.94001428641027,6.67620709052104,8.19145225744224,10.7792721272436,6.56510844420858,9.88436306988517,3.04770527032601,7.02364193409341,3.37136575378922,10.6669021823684,1.36118619792025,12.0191055911538,9.39652510801697,7.41761654058466,14.4043726120513,4.74041634496819,9.53269998168828,6.88632368426882,11.1392379279236,2.72823614451356,14.6411589061586,8.74474037101844,11.4768700341356,17.3954700333141,2.01504196455281,1.69560592310488,0,0,0,1.21973706129595,1.19276791489337,1.16193942869518,0.621966330092223,0.756962552626885,1.45990943630332,9.38697193978896,27.6593603422941,13.8134921352481,21.825292617503,25.2657818584355,0.946454400318751,1.51726221070292,1.20505514941741,1.8749975364507,2.61455332910887,1.18635309555548,0.404493924480493,1.37355025587742,1.92373578473195,11.0723318193697,11.2193419042757,2.057870056657,4.41026134156626,6.33775174109154,17.6908899001973,7.68026878685825,0,0.122988438543114,1.20097467208968,0,0,0,0,6.84197441151682,7.27954349695705,1.44331342025273,0.927443239800615,1.17408694235822,1.58803092537181,5.09284063834272,4.37584550139576,3.1608175918371,0.858486162094873,0.738651018262192,0.936017060556951,0.891786973732369,0,0.16798212819886,0.141775097242386,0.179117045405697,0,1.53353071666084,0,0.264145302039678,1.65862492432618,0.576479813667846,0.50496973370552,0.761974731506028,1.52795370223311,1.17217447210047,8.55362230113526,1.02827492703324,1.20137223137567,0,3.7003257833969,5.66748089483264,2.71351657537515,0.517086863031111,82.260982545933,4.22651376278,0.26593811658487,0,4.8869401109807,2.83698264046557,3.46348832720929,6.14805372730035,14.1081617401775,0.823240336780769,2.60588947434988,3.19852753868291,0.791951872933429,0,0,0.199945982364114,0,0.502257091432126,0,0.718874566474748,4.59447743336456,32.8064881593652,5.93603357337075,19.314774319736,8.0577433457953,0,0.394061520403854,0.646882724578552,1.54011643535698,2.03275699377971,2.60279707715243,0,0.167516265334349,0,0,0,0.414415513436035,48.953905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| |||
|short_description=p2@SNED1 | |||
}} |
Revision as of 17:49, 12 September 2013
Short description: | p2@SNED1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SNED1_5end |
Coexpression cluster: | C1156_Nucleus_Anulus_Mesenchymal_tenocyte_Pericytes_mesenchymal_Synoviocyte |
Association with transcript: | -166bp_to_ENST00000310397, ENST00000342631, ENST00000401884, ENST00000405547, NM_001080437, uc002wah.1_5end |
EntrezGene: | SNED1 |
HGNC: | 24696 |
UniProt: | Q8TER0B5MEF5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.49e-13 | 76 |
endothelial cell | 1.10e-08 | 36 |
endothelial cell of vascular tree | 9.90e-08 | 24 |
blood vessel endothelial cell | 9.91e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.91e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.12e-09 | 78 |
vascular system | 1.12e-09 | 78 |
adult organism | 8.37e-09 | 114 |
vessel | 1.55e-08 | 68 |
circulatory system | 1.65e-07 | 112 |
dense mesenchyme tissue | 1.94e-07 | 73 |
mesoderm | 2.26e-07 | 315 |
mesoderm-derived structure | 2.26e-07 | 315 |
presumptive mesoderm | 2.26e-07 | 315 |
epithelial tube open at both ends | 2.52e-07 | 59 |
blood vessel | 2.52e-07 | 59 |
blood vasculature | 2.52e-07 | 59 |
vascular cord | 2.52e-07 | 59 |
splanchnic layer of lateral plate mesoderm | 3.09e-07 | 83 |
cardiovascular system | 3.79e-07 | 109 |
paraxial mesoderm | 4.50e-07 | 72 |
presumptive paraxial mesoderm | 4.50e-07 | 72 |
somite | 4.59e-07 | 71 |
presomitic mesoderm | 4.59e-07 | 71 |
presumptive segmental plate | 4.59e-07 | 71 |
dermomyotome | 4.59e-07 | 71 |
trunk paraxial mesoderm | 4.59e-07 | 71 |
epithelial vesicle | 5.54e-07 | 78 |
blood vessel endothelium | 9.91e-07 | 18 |
endothelium | 9.91e-07 | 18 |
cardiovascular system endothelium | 9.91e-07 | 18 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.