FFCP PHASE1:Hg19::chr2:47630213..47630233,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4436|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7325|TSSclassifier=S|UniProt=C9J809,B4E2Z2|association_with_transcript=7bp_to_ENST00000454849,ENST00000543555,uc010yoh.1_5end|description=CAGE_peak_2_at_MSH2_5end|id=chr2:47630213..47630233,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002322;4.85e-07;5|ontology_enrichment_celltype_v019_2=CL:0002322,5.49e-07,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!1.02e-10!235;DOID:14566!3.47e-10!239;DOID:0050687!5.06e-10!143;DOID:305!1.47e-08!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.70e-08!57;UBERON:0005068!2.70e-08!57;UBERON:0006241!2.70e-08!57;UBERON:0007135!2.70e-08!57;UBERON:0007023!3.04e-08!115;UBERON:0000955!3.93e-07!69;UBERON:0006238!3.93e-07!69;UBERON:0002780!5.48e-07!41;UBERON:0001890!5.48e-07!41;UBERON:0006240!5.48e-07!41;UBERON:0003080!5.50e-07!42;UBERON:0002616!8.17e-07!59|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.59e-07,53;UBERON:0002616,1.59e-07,53;UBERON:0000955,5.28e-07,68;UBERON:0006238,5.28e-07,68|phase1_expression=0.181678379270557,0.214100523890983,0.845726424575827,3.00219895059391,0,0,0,0,0,0.982935746006035,0.697801167972428,0,0,0.37129905888014,0.662794751455832,0,0.602694528023977,0,0,0.123121058076788,0,0,1.43117993565528,1.23186982565596,0.87879847716362,0.305653622991805,1.06730766284929,0.787107813136792,0.393364276848904,0,0,0,0.90361775633475,1.10926203050036,1.08454080812422,0.568676929949686,0.587200878669695,0,0,0,0.671746422719773,0.971680998056939,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0.316462387440884,0.633765858935825,0.637812899895131,0.628975936525128,0,0.300353785683013,0.48217676009124,0,0.39783335439818,2.19196984517561,3.51992488922645,0.546138611262131,1.77901850772711,0.426730222566507,0,0,1.98313461835459,1.90810750907073,0,0,0,0,0,1.05353633910031,1.57367816091066,0.393010762749165,0.205601498999509,0.668745981562712,1.30368906653436,0,0,0.668462741311041,0.294605907474837,0.221533894583621,0.812411591295047,0.384273959177026,1.43065282315866,0.986627427622057,2.48715016007264,0.869409257205157,0,0,1.04535523804977,0.453237370790265,0.383220493601921,0.68725489096526,3.03623630423403,0.318565414324097,1.30216690771284,0,0.451725357233318,0.511946444617674,0,0.473554504088034,0,0.604820229674197,0,0.434473211648397,4.87613732627923,1.34140171940727,1.53435074212236,0.361439152384566,0.50133791063589,0.289693037921647,0,0,0.378139268656271,0,1.58102614247627,0.916853528483988,0,0,0.97364218096405,0.174129737299267,0.930705723632056,0.238490624305342,0,0,0.39752481473341,0,0,0,1.67799774483962,0.550236083880135,0.835979866147242,0.516833518338658,0.71153252537342,0.33472061276467,0,0,0,0.367663080345869,0,0.267899184852239,0.673588117878509,1.46394924628319,0,0,0,0,0,0,0.993943903390637,1.2663051166458,0.794455084879313,0.573673241497627,0,0,1.06748995729705,0,0.622422070799533,1.0776853765575,1.30769522490767,0.454072282934794,0,0.234321431833797,0,1.1409436430889,0.448346041655403,3.52303495931295,0.809364721840658,0.421352420106746,0.204154171254893,0.982674538494144,0.309977343527296,0,0.494533858557114,0,0,0.336672227908132,1.25118519871964,0.554128230968366,0.877955241761676,0.30648779579902,0.150238058906597,1.58805056424029,0.538168907066586,0.640672166455702,1.05965950579781,0.600182192168805,0.515262646192195,0.772921620136887,0,0.843881661206331,0.487185025805993,0.757301322732344,0.0920498986422993,0.484938170456436,3.19508633264953,1.91428986632517,3.56077243852024,1.93260853163297,1.63647672354501,0.573609190778008,8.0502646045533,9.80720285578991,6.85544262930159,4.87206958572241,4.79409616663694,5.10968302706162,0,0,0,0,1.44375896333917,0.946454400318751,0.674338760312407,0.723033089650446,0.772057809126758,0.871517776369625,0.474541238222193,1.48314438976181,0.588664395376038,1.15424147083917,0,0,0.4115740113314,0,1.26755034821831,0,1.18157981336281,0.441463099414651,0.491953754172454,0,0.329250856225877,0,1.70899253099772,1.29623823221941,0.651616610620649,2.07986957055916,2.88662684050547,0.579652024875384,0.234817388471643,0.144366447761074,0,0.380508304469197,0,0,2.46217006087397,0.936017060556951,0.445893486866185,0,0.839910640994298,0.425325291727159,0.53735113621709,0.581267877027924,0,0.492663237895943,0.792435906119034,1.03664057770386,2.45003920808834,3.7872730027914,2.6669115602711,0,2.34434894420094,0,0.925447434329912,0.901029173531752,0.571652865261156,0.560655421726804,0,0.2933531432838,0.258543431515556,0,0.845302752556,0.531876233169741,0,0.514414748524284,0,0.266422179016099,0.57191197463259,0,0,1.30294473717494,0.355391948742546,1.58390374586686,0.301439377059586,1.74306691720059,0.099972991182057,0,0,0,0,3.44585807502342,0,0.723906533337896,0.410952645100767,1.25342674267927,0.896681151948218,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4436 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7325 | |||
|TSSclassifier=S | |||
|UniProt=C9J809,B4E2Z2 | |||
|association_with_transcript=7bp_to_ENST00000454849,ENST00000543555,uc010yoh.1_5end | |||
|description=CAGE_peak_2_at_MSH2_5end | |||
|id=chr2:47630213..47630233,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.85e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,5.49e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.02e-10!235;DOID:14566!3.47e-10!239;DOID:0050687!5.06e-10!143;DOID:305!1.47e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.70e-08!57;UBERON:0005068!2.70e-08!57;UBERON:0006241!2.70e-08!57;UBERON:0007135!2.70e-08!57;UBERON:0007023!3.04e-08!115;UBERON:0000955!3.93e-07!69;UBERON:0006238!3.93e-07!69;UBERON:0002780!5.48e-07!41;UBERON:0001890!5.48e-07!41;UBERON:0006240!5.48e-07!41;UBERON:0003080!5.50e-07!42;UBERON:0002616!8.17e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.59e-07,53;UBERON:0002616,1.59e-07,53;UBERON:0000955,5.28e-07,68;UBERON:0006238,5.28e-07,68 | |||
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| |||
|short_description=p2@MSH2 | |||
}} |
Revision as of 18:51, 12 September 2013
Short description: | p2@MSH2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_MSH2_5end |
Coexpression cluster: | NA |
Association with transcript: | 7bp_to_ENST00000454849, ENST00000543555, uc010yoh.1_5end |
EntrezGene: | MSH2 |
HGNC: | 7325 |
UniProt: | C9J809B4E2Z2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.49e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.59e-07 | 53 |
regional part of brain | 1.59e-07 | 53 |
brain | 5.28e-07 | 68 |
future brain | 5.28e-07 | 68 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.