FFCP PHASE1:Mm9::chr11:3271285..3271296,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16886|HGNC=|UniProt=|association_with_transcript=41bp_to_ENSMUST00000147344_5end|description=CAGE_peak_4_at_Limk2_5end|id=chr11:3271285..3271296,-|ontology_enrichment_celltype=CL:0000117!1.38e-12!23;CL:0000337!1.38e-12!23;CL:0002319!7.32e-12!43;CL:0000221!2.86e-11!44;CL:0000133!2.86e-11!44;CL:0000055!2.40e-09!50;CL:0000540!1.03e-08!33;CL:0000047!1.03e-08!33;CL:0000031!1.03e-08!33;CL:0000404!1.03e-08!33;CL:0000393!7.30e-07!39;CL:0000211!7.30e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,9.90e-22,23;CL:0000337,9.90e-22,23;CL:0002319,2.56e-16,43;CL:0000221,7.79e-16,44;CL:0000133,7.79e-16,44;CL:0000540,6.04e-14,33;CL:0000047,6.04e-14,33;CL:0000031,6.04e-14,33;CL:0000404,6.04e-14,33;CL:0002609,2.77e-12,6;CL:0000393,3.32e-11,39;CL:0000211,3.32e-11,39;CL:0000349,3.13e-08,3;CL:0000351,3.13e-08,3;CL:0002321,3.66e-08,70;CL:0002613,4.79e-08,3;CL:0002612,1.35e-07,3;CL:0002608,2.47e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.79e-15!102;UBERON:0000924!3.79e-15!102;UBERON:0006601!3.79e-15!102;UBERON:0001017!1.32e-13!73;UBERON:0005743!1.32e-13!73;UBERON:0002020!3.25e-13!34;UBERON:0000073!3.97e-13!75;UBERON:0001016!3.97e-13!75;UBERON:0001049!5.26e-12!52;UBERON:0005068!5.26e-12!52;UBERON:0006241!5.26e-12!52;UBERON:0007135!5.26e-12!52;UBERON:0000033!6.29e-11!63;UBERON:0002346!6.55e-11!71;UBERON:0003075!6.55e-11!71;UBERON:0007284!6.55e-11!71;UBERON:0000955!5.91e-10!50;UBERON:0006238!5.91e-10!50;UBERON:0002791!8.24e-10!29;UBERON:0003528!8.24e-10!29;UBERON:0001893!8.24e-10!29;UBERON:0002616!9.58e-10!49;UBERON:0003056!1.38e-09!49;UBERON:0002780!5.46e-09!39;UBERON:0001890!5.46e-09!39;UBERON:0006240!5.46e-09!39;UBERON:0003080!1.76e-08!40;UBERON:0000956!1.42e-07!21;UBERON:0001869!1.42e-07!21;UBERON:0000203!1.42e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.31e-26,34;UBERON:0001049,7.16e-19,52;UBERON:0005068,7.16e-19,52;UBERON:0006241,7.16e-19,52;UBERON:0007135,7.16e-19,52;UBERON:0000073,5.91e-18,54;UBERON:0003528,6.05e-18,29;UBERON:0002791,6.05e-18,29;UBERON:0001893,6.05e-18,29;UBERON:0004121,1.15e-16,95;UBERON:0000924,1.15e-16,95;UBERON:0006601,1.15e-16,95;UBERON:0001017,5.80e-16,73;UBERON:0010371,1.33e-15,73;UBERON:0001016,2.31e-15,75;UBERON:0001954,2.70e-14,7;UBERON:0003022,2.70e-14,7;UBERON:0002421,2.70e-14,7;UBERON:0000349,2.70e-14,7;UBERON:0002600,2.70e-14,7;UBERON:0002346,3.10e-14,64;UBERON:0003075,3.10e-14,64;UBERON:0007284,3.10e-14,64;UBERON:0000956,3.40e-14,21;UBERON:0001869,3.40e-14,21;UBERON:0000203,3.40e-14,21;UBERON:0002780,7.50e-14,39;UBERON:0001890,7.50e-14,39;UBERON:0006240,7.50e-14,39;UBERON:0003080,2.13e-13,40;UBERON:0002616,1.30e-12,46;UBERON:0000955,3.01e-12,47;UBERON:0006238,3.01e-12,47;UBERON:0001948,1.35e-11,5;UBERON:0002315,1.35e-11,5;UBERON:0002619,9.76e-11,17;UBERON:0003056,3.71e-10,49;UBERON:0010314,5.38e-10,92;UBERON:0002240,1.37e-09,6;UBERON:0005174,1.37e-09,6;UBERON:0001137,1.37e-09,6;UBERON:0005631,2.39e-08,3;UBERON:0000478,2.39e-08,3;UBERON:0000158,2.39e-08,3;UBERON:0000358,3.13e-08,3;UBERON:0000307,3.13e-08,3;UBERON:0007010,3.13e-08,3;UBERON:0000369,3.80e-08,5;UBERON:0002435,3.80e-08,5;UBERON:0000204,3.80e-08,5;UBERON:0010082,3.80e-08,5;UBERON:0002257,1.35e-07,3;UBERON:0004111,1.84e-07,122;UBERON:0000025,6.27e-07,114|phase1_expression=0.320297694209588,0.348975407639361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,2.34717403304412,0.65407546914134,2.63623419281366,1.1665793944457,0.419959264876088,2.87505128729943,0,0,0,0.257259436035947,0,0,2.22548106945558,0.528990979272033,3.1691570175309,0.338844532069132,0,0,0,0,0.299600110518405,0.768436610643109,1.55534418462716,1.4850653216486,1.26194976810829,4.28476476605705,1.98781686856452,2.32732518508413,2.01275489138296,2.75765635983006,0,0.638436690425939,0.46081959976873,2.50583946687368,5.03182039813253,3.64639359389732,0,0.56276261003168,0.763991238884051,2.35702868378934,3.27454865837937,2.42319279572891,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216491041011214,0.506719730950197,0.505524445014783,0,0,0,0.173485326766136,0,0,0.150722640552623,0.352766121407114,0,4.20231445148436,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0,0,3.8952849154988,0.347648640384553,0.767146371990992,0,1.1356888414743,0,0,0.252722758433675,0,0.650602214813519,0.459804208866946,0,0.30140963567143,0.748401490664606,0.2562274405697,0.655912071918102,0.258703370739016,0,0.378212160335639,0.879755620819744,0.43839146485515,0,0.348252166522167,0.61734640922383,0,0,0,0,1.44988040774851,0.234526059981096,0.900310307305074,0.473489471170421,0.196764231747404,0,0.232533944750408,0,0.116765342367169,0,0,0.0810688095458557,0,0,0,1.05144974282064,2.46971069710283,0,0,0.213288250535234,0,0,0.201683524623343,0.444756087689741,0,0,0.329397909448022,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,1.13694847062291,0.3259299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| ||
|EntrezGene=16886 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=41bp_to_ENSMUST00000147344_5end | |||
|description=CAGE_peak_4_at_Limk2_5end | |||
|id=chr11:3271285..3271296,- | |||
|ontology_enrichment_celltype=CL:0000117!1.38e-12!23;CL:0000337!1.38e-12!23;CL:0002319!7.32e-12!43;CL:0000221!2.86e-11!44;CL:0000133!2.86e-11!44;CL:0000055!2.40e-09!50;CL:0000540!1.03e-08!33;CL:0000047!1.03e-08!33;CL:0000031!1.03e-08!33;CL:0000404!1.03e-08!33;CL:0000393!7.30e-07!39;CL:0000211!7.30e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.90e-22,23;CL:0000337,9.90e-22,23;CL:0002319,2.56e-16,43;CL:0000221,7.79e-16,44;CL:0000133,7.79e-16,44;CL:0000540,6.04e-14,33;CL:0000047,6.04e-14,33;CL:0000031,6.04e-14,33;CL:0000404,6.04e-14,33;CL:0002609,2.77e-12,6;CL:0000393,3.32e-11,39;CL:0000211,3.32e-11,39;CL:0000349,3.13e-08,3;CL:0000351,3.13e-08,3;CL:0002321,3.66e-08,70;CL:0002613,4.79e-08,3;CL:0002612,1.35e-07,3;CL:0002608,2.47e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.79e-15!102;UBERON:0000924!3.79e-15!102;UBERON:0006601!3.79e-15!102;UBERON:0001017!1.32e-13!73;UBERON:0005743!1.32e-13!73;UBERON:0002020!3.25e-13!34;UBERON:0000073!3.97e-13!75;UBERON:0001016!3.97e-13!75;UBERON:0001049!5.26e-12!52;UBERON:0005068!5.26e-12!52;UBERON:0006241!5.26e-12!52;UBERON:0007135!5.26e-12!52;UBERON:0000033!6.29e-11!63;UBERON:0002346!6.55e-11!71;UBERON:0003075!6.55e-11!71;UBERON:0007284!6.55e-11!71;UBERON:0000955!5.91e-10!50;UBERON:0006238!5.91e-10!50;UBERON:0002791!8.24e-10!29;UBERON:0003528!8.24e-10!29;UBERON:0001893!8.24e-10!29;UBERON:0002616!9.58e-10!49;UBERON:0003056!1.38e-09!49;UBERON:0002780!5.46e-09!39;UBERON:0001890!5.46e-09!39;UBERON:0006240!5.46e-09!39;UBERON:0003080!1.76e-08!40;UBERON:0000956!1.42e-07!21;UBERON:0001869!1.42e-07!21;UBERON:0000203!1.42e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.31e-26,34;UBERON:0001049,7.16e-19,52;UBERON:0005068,7.16e-19,52;UBERON:0006241,7.16e-19,52;UBERON:0007135,7.16e-19,52;UBERON:0000073,5.91e-18,54;UBERON:0003528,6.05e-18,29;UBERON:0002791,6.05e-18,29;UBERON:0001893,6.05e-18,29;UBERON:0004121,1.15e-16,95;UBERON:0000924,1.15e-16,95;UBERON:0006601,1.15e-16,95;UBERON:0001017,5.80e-16,73;UBERON:0010371,1.33e-15,73;UBERON:0001016,2.31e-15,75;UBERON:0001954,2.70e-14,7;UBERON:0003022,2.70e-14,7;UBERON:0002421,2.70e-14,7;UBERON:0000349,2.70e-14,7;UBERON:0002600,2.70e-14,7;UBERON:0002346,3.10e-14,64;UBERON:0003075,3.10e-14,64;UBERON:0007284,3.10e-14,64;UBERON:0000956,3.40e-14,21;UBERON:0001869,3.40e-14,21;UBERON:0000203,3.40e-14,21;UBERON:0002780,7.50e-14,39;UBERON:0001890,7.50e-14,39;UBERON:0006240,7.50e-14,39;UBERON:0003080,2.13e-13,40;UBERON:0002616,1.30e-12,46;UBERON:0000955,3.01e-12,47;UBERON:0006238,3.01e-12,47;UBERON:0001948,1.35e-11,5;UBERON:0002315,1.35e-11,5;UBERON:0002619,9.76e-11,17;UBERON:0003056,3.71e-10,49;UBERON:0010314,5.38e-10,92;UBERON:0002240,1.37e-09,6;UBERON:0005174,1.37e-09,6;UBERON:0001137,1.37e-09,6;UBERON:0005631,2.39e-08,3;UBERON:0000478,2.39e-08,3;UBERON:0000158,2.39e-08,3;UBERON:0000358,3.13e-08,3;UBERON:0000307,3.13e-08,3;UBERON:0007010,3.13e-08,3;UBERON:0000369,3.80e-08,5;UBERON:0002435,3.80e-08,5;UBERON:0000204,3.80e-08,5;UBERON:0010082,3.80e-08,5;UBERON:0002257,1.35e-07,3;UBERON:0004111,1.84e-07,122;UBERON:0000025,6.27e-07,114 | |||
|phase1_expression=0.320297694209588,0.348975407639361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,2.34717403304412,0.65407546914134,2.63623419281366,1.1665793944457,0.419959264876088,2.87505128729943,0,0,0,0.257259436035947,0,0,2.22548106945558,0.528990979272033,3.1691570175309,0.338844532069132,0,0,0,0,0.299600110518405,0.768436610643109,1.55534418462716,1.4850653216486,1.26194976810829,4.28476476605705,1.98781686856452,2.32732518508413,2.01275489138296,2.75765635983006,0,0.638436690425939,0.46081959976873,2.50583946687368,5.03182039813253,3.64639359389732,0,0.56276261003168,0.763991238884051,2.35702868378934,3.27454865837937,2.42319279572891,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216491041011214,0.506719730950197,0.505524445014783,0,0,0,0.173485326766136,0,0,0.150722640552623,0.352766121407114,0,4.20231445148436,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0,0,3.8952849154988,0.347648640384553,0.767146371990992,0,1.1356888414743,0,0,0.252722758433675,0,0.650602214813519,0.459804208866946,0,0.30140963567143,0.748401490664606,0.2562274405697,0.655912071918102,0.258703370739016,0,0.378212160335639,0.879755620819744,0.43839146485515,0,0.348252166522167,0.61734640922383,0,0,0,0,1.44988040774851,0.234526059981096,0.900310307305074,0.473489471170421,0.196764231747404,0,0.232533944750408,0,0.116765342367169,0,0,0.0810688095458557,0,0,0,1.05144974282064,2.46971069710283,0,0,0.213288250535234,0,0,0.201683524623343,0.444756087689741,0,0,0.329397909448022,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,1.13694847062291,0.325929952884052,0,0.234690248288502,0,0,0.780534591431195,0,0,0,0.327726629431476,0,0,0,0,0,0,0.481651769963376,0.234423373184406,0,0,0,0,0.215423397732799,0,0,0,0.404810701674894,0.292255857911312,0,0.321321316421807,0,0,0.325773918707152,0,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0.36012218806262,0,0.214337035031592,0,0.178368817602071,0.329098041204242,0.913394847343798,5.86679270159276,4.2366414172764,0.220528398054962,0.65954501176592,1.77610869365496,0.422190474497091,1.3130957840345,1.31312719796049,0,0,0,0.206386867963223,0,0,0,0,0,0,0,0,0.158167996790568,0.406638934253697,0.108005340821801,0.209088296014469,0.218362563746178,0.404593039154462,0.0826534557253359,0.26175594198403,0,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0.209718688851422,0,0,0,0.202725215290164,0.102710957164827,0.129920822977795,0,0,0,0,0,0.15241361331,0.100826185136841,0,0,0.116876902181569,1.13365191807606,4.88369097422942,3.13998498133165,4.86865387455827,0,0.750729901804728,0,1.07184189539533,0,1.6942555278512,1.84130094602871,2.29158205375759,0.68741272937475,0,0,0,0.45032120322422,0,0.51776031175182,0.31136204275253,0.399024873401031,0.170733605754134,0.243106717068294,0,0.367687016900028,0.888986911206461,0.206035057238894,0,0.505394423527595,0.50695859978048,0.188626341386076,0.280924522409647,0.384150914429216,0.516919220600519,0,0.695305955669133,0.38581844092741,0.412085900803307,0.294397840268795,0,0.532427418478012,0.238436189947321,0.145346416632329,0.658765662907314,0.338458431566706,0.548783918618318,0.263069711437843,0.271608227691724,0,0.237270036248348,0.591026894253381,0.409231043169689,1.23949472948773,0.578719832943424,1.99848462350357,0.233931608445408,0.429742108096597,0.57386499620653,0,0 | |||
|short_description=p4@Limk2 | |||
}} |
Revision as of 19:30, 12 September 2013
Short description: | p4@Limk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Limk2_5end |
Coexpression cluster: | NA |
Association with transcript: | 41bp_to_ENSMUST00000147344_5end |
EntrezGene: | Limk2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.90e-22 | 23 |
neuroblast (sensu Vertebrata) | 9.90e-22 | 23 |
neural cell | 2.56e-16 | 43 |
ectodermal cell | 7.79e-16 | 44 |
neurectodermal cell | 7.79e-16 | 44 |
neuron | 6.04e-14 | 33 |
neuronal stem cell | 6.04e-14 | 33 |
neuroblast | 6.04e-14 | 33 |
electrically signaling cell | 6.04e-14 | 33 |
neuron of cerebral cortex | 2.77e-12 | 6 |
electrically responsive cell | 3.32e-11 | 39 |
electrically active cell | 3.32e-11 | 39 |
extraembryonic cell | 3.13e-08 | 3 |
trophoblast cell | 3.13e-08 | 3 |
embryonic cell | 3.66e-08 | 70 |
striatum neuron | 4.79e-08 | 3 |
neuron of the ventral spinal cord | 1.35e-07 | 3 |
hippocampal neuron | 2.47e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.