FFCP PHASE1:Hg19::chr3:1134339..1134350,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27255|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2176|TSSclassifier=S|UniProt=Q9UQ52,F8VWS7,F5H752|association_with_transcript=0bp_to_ENST00000350110,ENST00000397479,ENST00000539053_5end|coexpression_cluster_id=C38|description=CAGE_peak_5_at_CNTN6_5end|id=chr3:1134339..1134350,+|ontology_enrichment_celltype=CL:0000064!5.12e-12!3;CL:0005012!5.12e-12!3;CL:0000067!5.12e-12!3;CL:0002304!5.12e-12!3|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;1.48e-84;3!UBERON:0000358;1.78e-29;1!UBERON:0006241;1.14e-10;3!UBERON:0003057;1.14e-10;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3371;7.48e-30;1!DOID:4549;7.48e-30;1!DOID:5861;7.48e-30;1!DOID:6496;7.48e-30;1|ontology_enrichment_disease_v019_2=DOID:3371,7.48e-30,1;DOID:4549,7.48e-30,1;DOID:5861,7.48e-30,1;DOID:6496,7.48e-30,1|ontology_enrichment_uberon=UBERON:0003075!1.46e-33!86;UBERON:0007284!1.46e-33!86;UBERON:0002346!9.24e-32!90;UBERON:0001049!1.99e-30!57;UBERON:0005068!1.99e-30!57;UBERON:0006241!1.99e-30!57;UBERON:0007135!1.99e-30!57;UBERON:0003076!2.05e-25!15;UBERON:0003057!2.05e-25!15;UBERON:0002616!7.54e-24!59;UBERON:0005743!6.71e-22!86;UBERON:0000073!3.63e-21!94;UBERON:0001016!3.63e-21!94;UBERON:0004733!1.10e-20!12;UBERON:0002028!1.10e-20!12;UBERON:0007277!1.10e-20!12;UBERON:0007023!7.25e-20!115;UBERON:0000955!2.41e-19!69;UBERON:0006238!2.41e-19!69;UBERON:0001017!3.17e-19!82;UBERON:0004732!5.49e-19!13;UBERON:0000153!4.69e-18!129;UBERON:0007811!4.69e-18!129;UBERON:0003056!6.69e-18!61;UBERON:0000033!8.97e-18!123;UBERON:0004121!1.37e-14!169;UBERON:0000924!4.32e-14!173;UBERON:0006601!4.32e-14!173;UBERON:0001893!2.43e-13!34;UBERON:0001950!3.03e-13!20;UBERON:0002780!1.04e-12!41;UBERON:0001890!1.04e-12!41;UBERON:0006240!1.04e-12!41;UBERON:0003080!2.39e-12!42;UBERON:0002298!2.76e-12!8;UBERON:0001896!2.87e-12!3;UBERON:0005290!2.87e-12!3;UBERON:0010096!2.87e-12!3;UBERON:0001869!4.96e-12!32;UBERON:0001778!5.12e-12!3;UBERON:0001775!5.12e-12!3;UBERON:0002619!5.93e-12!22;UBERON:0002680!1.24e-11!9;UBERON:0001895!1.24e-11!9;UBERON:0010092!1.24e-11!9;UBERON:0002791!1.96e-11!33;UBERON:0002020!3.54e-11!34;UBERON:0003528!3.54e-11!34;UBERON:0000956!2.17e-10!25;UBERON:0000203!2.17e-10!25;UBERON:0000488!3.96e-09!4;UBERON:0000025!4.00e-09!194;UBERON:0000483!8.27e-09!309;UBERON:0007625!1.04e-08!11;UBERON:0000119!1.20e-08!312;UBERON:0000970!1.20e-08!20;UBERON:0002104!3.46e-08!21;UBERON:0000064!3.96e-08!219;UBERON:0000477!7.66e-08!286;UBERON:0000020!2.16e-07!23;UBERON:0001032!4.81e-07!24;UBERON:0004456!4.81e-07!24;UBERON:0002037!5.16e-07!6;UBERON:0006215!5.16e-07!6;UBERON:0000481!7.05e-07!347;UBERON:0000019!8.48e-07!19;UBERON:0000047!8.48e-07!19;UBERON:0004088!8.48e-07!19;UBERON:0003072!8.48e-07!19;UBERON:0003071!8.48e-07!19;UBERON:0004128!8.48e-07!19|ontology_enrichment_uberon_v019=UBERON:0002037;8.03e-43;6!UBERON:0002680;7.15e-29;9!UBERON:0001895;7.15e-29;9!UBERON:0004733;7.04e-22;12!UBERON:0002028;7.04e-22;12!UBERON:0004732;2.91e-20;13!UBERON:0002418;6.73e-11;3!UBERON:0004755;6.73e-11;3!UBERON:0002240;1.14e-10;3!UBERON:0005174;1.14e-10;3!UBERON:0001137;1.14e-10;3|ontology_enrichment_uberon_v019_2=UBERON:0002037,6.48e-43,6;UBERON:0006215,6.48e-43,6;UBERON:0003076,1.78e-30,15;UBERON:0003057,1.78e-30,15;UBERON:0002680,6.20e-29,9;UBERON:0001895,6.20e-29,9;UBERON:0010092,6.20e-29,9;UBERON:0004733,6.33e-22,12;UBERON:0002028,6.33e-22,12;UBERON:0007277,6.33e-22,12;UBERON:0004732,2.64e-20,13;UBERON:0002418,6.73e-11,3;UBERON:0004755,6.73e-11,3;UBERON:0002240,1.20e-10,3;UBERON:0005174,1.20e-10,3;UBERON:0001137,1.20e-10,3;UBERON:0001049,2.02e-08,56;UBERON:0005068,2.02e-08,56;UBERON:0006241,2.02e-08,56;UBERON:0007135,2.02e-08,56|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27255 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2176 | |||
|TSSclassifier=S | |||
|UniProt=Q9UQ52,F8VWS7,F5H752 | |||
|association_with_transcript=0bp_to_ENST00000350110,ENST00000397479,ENST00000539053_5end | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_5_at_CNTN6_5end | |||
|id=chr3:1134339..1134350,+ | |||
|ontology_enrichment_celltype=CL:0000064!5.12e-12!3;CL:0005012!5.12e-12!3;CL:0000067!5.12e-12!3;CL:0002304!5.12e-12!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.48e-84;3!UBERON:0000358;1.78e-29;1!UBERON:0006241;1.14e-10;3!UBERON:0003057;1.14e-10;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;7.48e-30;1!DOID:4549;7.48e-30;1!DOID:5861;7.48e-30;1!DOID:6496;7.48e-30;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,7.48e-30,1;DOID:4549,7.48e-30,1;DOID:5861,7.48e-30,1;DOID:6496,7.48e-30,1 | |||
|ontology_enrichment_uberon=UBERON:0003075!1.46e-33!86;UBERON:0007284!1.46e-33!86;UBERON:0002346!9.24e-32!90;UBERON:0001049!1.99e-30!57;UBERON:0005068!1.99e-30!57;UBERON:0006241!1.99e-30!57;UBERON:0007135!1.99e-30!57;UBERON:0003076!2.05e-25!15;UBERON:0003057!2.05e-25!15;UBERON:0002616!7.54e-24!59;UBERON:0005743!6.71e-22!86;UBERON:0000073!3.63e-21!94;UBERON:0001016!3.63e-21!94;UBERON:0004733!1.10e-20!12;UBERON:0002028!1.10e-20!12;UBERON:0007277!1.10e-20!12;UBERON:0007023!7.25e-20!115;UBERON:0000955!2.41e-19!69;UBERON:0006238!2.41e-19!69;UBERON:0001017!3.17e-19!82;UBERON:0004732!5.49e-19!13;UBERON:0000153!4.69e-18!129;UBERON:0007811!4.69e-18!129;UBERON:0003056!6.69e-18!61;UBERON:0000033!8.97e-18!123;UBERON:0004121!1.37e-14!169;UBERON:0000924!4.32e-14!173;UBERON:0006601!4.32e-14!173;UBERON:0001893!2.43e-13!34;UBERON:0001950!3.03e-13!20;UBERON:0002780!1.04e-12!41;UBERON:0001890!1.04e-12!41;UBERON:0006240!1.04e-12!41;UBERON:0003080!2.39e-12!42;UBERON:0002298!2.76e-12!8;UBERON:0001896!2.87e-12!3;UBERON:0005290!2.87e-12!3;UBERON:0010096!2.87e-12!3;UBERON:0001869!4.96e-12!32;UBERON:0001778!5.12e-12!3;UBERON:0001775!5.12e-12!3;UBERON:0002619!5.93e-12!22;UBERON:0002680!1.24e-11!9;UBERON:0001895!1.24e-11!9;UBERON:0010092!1.24e-11!9;UBERON:0002791!1.96e-11!33;UBERON:0002020!3.54e-11!34;UBERON:0003528!3.54e-11!34;UBERON:0000956!2.17e-10!25;UBERON:0000203!2.17e-10!25;UBERON:0000488!3.96e-09!4;UBERON:0000025!4.00e-09!194;UBERON:0000483!8.27e-09!309;UBERON:0007625!1.04e-08!11;UBERON:0000119!1.20e-08!312;UBERON:0000970!1.20e-08!20;UBERON:0002104!3.46e-08!21;UBERON:0000064!3.96e-08!219;UBERON:0000477!7.66e-08!286;UBERON:0000020!2.16e-07!23;UBERON:0001032!4.81e-07!24;UBERON:0004456!4.81e-07!24;UBERON:0002037!5.16e-07!6;UBERON:0006215!5.16e-07!6;UBERON:0000481!7.05e-07!347;UBERON:0000019!8.48e-07!19;UBERON:0000047!8.48e-07!19;UBERON:0004088!8.48e-07!19;UBERON:0003072!8.48e-07!19;UBERON:0003071!8.48e-07!19;UBERON:0004128!8.48e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;8.03e-43;6!UBERON:0002680;7.15e-29;9!UBERON:0001895;7.15e-29;9!UBERON:0004733;7.04e-22;12!UBERON:0002028;7.04e-22;12!UBERON:0004732;2.91e-20;13!UBERON:0002418;6.73e-11;3!UBERON:0004755;6.73e-11;3!UBERON:0002240;1.14e-10;3!UBERON:0005174;1.14e-10;3!UBERON:0001137;1.14e-10;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,6.48e-43,6;UBERON:0006215,6.48e-43,6;UBERON:0003076,1.78e-30,15;UBERON:0003057,1.78e-30,15;UBERON:0002680,6.20e-29,9;UBERON:0001895,6.20e-29,9;UBERON:0010092,6.20e-29,9;UBERON:0004733,6.33e-22,12;UBERON:0002028,6.33e-22,12;UBERON:0007277,6.33e-22,12;UBERON:0004732,2.64e-20,13;UBERON:0002418,6.73e-11,3;UBERON:0004755,6.73e-11,3;UBERON:0002240,1.20e-10,3;UBERON:0005174,1.20e-10,3;UBERON:0001137,1.20e-10,3;UBERON:0001049,2.02e-08,56;UBERON:0005068,2.02e-08,56;UBERON:0006241,2.02e-08,56;UBERON:0007135,2.02e-08,56 | |||
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|short_description=p5@CNTN6 | |||
}} |
Revision as of 20:51, 12 September 2013
Short description: | p5@CNTN6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_CNTN6_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 0bp_to_ENST00000350110, ENST00000397479, ENST00000539053_5end |
EntrezGene: | CNTN6 |
HGNC: | 2176 |
UniProt: | Q9UQ52F8VWS7F5H752 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 6.48e-43 | 6 |
rhombic lip | 6.48e-43 | 6 |
posterior neural tube | 1.78e-30 | 15 |
chordal neural plate | 1.78e-30 | 15 |
regional part of metencephalon | 6.20e-29 | 9 |
metencephalon | 6.20e-29 | 9 |
future metencephalon | 6.20e-29 | 9 |
segmental subdivision of hindbrain | 6.33e-22 | 12 |
hindbrain | 6.33e-22 | 12 |
presumptive hindbrain | 6.33e-22 | 12 |
segmental subdivision of nervous system | 2.64e-20 | 13 |
cartilage tissue | 6.73e-11 | 3 |
skeletal tissue | 6.73e-11 | 3 |
spinal cord | 1.20e-10 | 3 |
dorsal region element | 1.20e-10 | 3 |
dorsum | 1.20e-10 | 3 |
neural tube | 2.02e-08 | 56 |
neural rod | 2.02e-08 | 56 |
future spinal cord | 2.02e-08 | 56 |
neural keel | 2.02e-08 | 56 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 7.48e-30 | 1 |
extraosseous chondrosarcoma | 7.48e-30 | 1 |
myxoid chondrosarcoma | 7.48e-30 | 1 |
extraskeletal myxoid chondrosarcoma | 7.48e-30 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.