FFCP PHASE1:Hg19::chr3:158450534..158450591,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5918|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9867|TSSclassifier=S|UniProt=P49788|association_with_transcript=-49bp_to_ENST00000237696_5end|description=CAGE_peak_2_at_RARRES1_5end|id=chr3:158450534..158450591,-|ontology_enrichment_celltype=CL:0000187!6.57e-19!54;CL:0000680!1.52e-18!57;CL:0000056!1.52e-18!57;CL:0000355!1.52e-18!57;CL:0000183!8.40e-18!59;CL:0000192!3.12e-16!42;CL:0000514!3.12e-16!42;CL:0000222!2.93e-15!119;CL:0000393!5.86e-15!60;CL:0000211!5.86e-15!60;CL:0000359!6.10e-12!32;CL:0000055!1.83e-09!180;CL:0002494!1.55e-08!16|ontology_enrichment_celltype_v019=CL:0000192;8.28e-13;43!CL:0000359;8.04e-12;32!CL:0000187;3.30e-11;55!CL:0000393;8.68e-10;61!CL:0000211;8.68e-10;61!CL:0002494;9.95e-09;16!CL:0000077;1.10e-07;19!CL:0000235;2.43e-07;6|ontology_enrichment_celltype_v019_2=CL:0000187,9.53e-21,55;CL:0000680,4.95e-20,58;CL:0000056,4.95e-20,58;CL:0000355,4.95e-20,58;CL:0000192,1.15e-17,43;CL:0000514,1.15e-17,43;CL:0000393,2.09e-17,61;CL:0000211,2.09e-17,61;CL:0000222,8.18e-17,121;CL:0000359,1.76e-12,32;CL:0002494,7.17e-09,16;CL:0000077,1.14e-07,19;CL:0000235,2.25e-07,6|ontology_enrichment_development_v019=CL:0000514;8.28e-13;43!CL:0000355;1.08e-10;58|ontology_enrichment_disease=DOID:2394!8.95e-08!14|ontology_enrichment_disease_v019=DOID:2394;1.15e-09;14|ontology_enrichment_disease_v019_2=DOID:2394,1.47e-09,14|ontology_enrichment_uberon=UBERON:0002385!2.61e-19!63;UBERON:0001015!2.61e-19!63;UBERON:0000383!2.61e-19!63;UBERON:0001134!1.42e-18!61;UBERON:0002036!1.42e-18!61;UBERON:0003082!1.42e-18!61;UBERON:0005256!9.48e-17!143;UBERON:0000481!1.48e-14!347;UBERON:0004290!1.84e-14!70;UBERON:0000914!2.60e-13!83;UBERON:0002329!2.60e-13!83;UBERON:0003077!2.60e-13!83;UBERON:0003059!2.60e-13!83;UBERON:0007282!2.60e-13!83;UBERON:0009618!2.60e-13!83;UBERON:0007285!2.60e-13!83;UBERON:0000486!5.68e-13!82;UBERON:0003104!1.94e-12!238;UBERON:0009142!1.94e-12!238;UBERON:0000926!2.88e-12!448;UBERON:0004120!2.88e-12!448;UBERON:0006603!2.88e-12!448;UBERON:0000490!4.58e-12!138;UBERON:0003914!6.12e-12!118;UBERON:0004872!1.16e-11!84;UBERON:0000948!2.38e-11!24;UBERON:0005498!2.38e-11!24;UBERON:0004140!2.38e-11!24;UBERON:0009881!2.38e-11!24;UBERON:0004141!2.38e-11!24;UBERON:0003084!2.38e-11!24;UBERON:0007005!2.38e-11!24;UBERON:0004139!2.38e-11!24;UBERON:0004291!2.38e-11!24;UBERON:0007100!4.16e-11!27;UBERON:0000477!7.79e-10!286;UBERON:0002100!1.80e-09!216;UBERON:0003103!4.41e-09!69;UBERON:0002204!7.50e-09!167;UBERON:0001009!1.78e-08!113;UBERON:0000119!2.50e-08!312;UBERON:0004535!2.84e-08!110;UBERON:0000483!3.77e-08!309;UBERON:0001637!4.88e-08!42;UBERON:0003509!4.88e-08!42;UBERON:0004572!4.88e-08!42;UBERON:0000468!8.01e-08!659;UBERON:0000467!8.38e-08!625;UBERON:0004573!9.01e-08!33;UBERON:0004571!9.01e-08!33;UBERON:0002049!9.83e-08!79;UBERON:0007798!9.83e-08!79;UBERON:0004111!1.07e-07!241;UBERON:0000480!1.13e-07!626;UBERON:0001048!1.62e-07!168;UBERON:0000055!3.67e-07!69;UBERON:0002050!5.09e-07!605;UBERON:0005423!5.09e-07!605;UBERON:0000923!7.40e-07!604;UBERON:0005291!7.40e-07!604;UBERON:0006598!7.40e-07!604;UBERON:0002532!7.40e-07!604;UBERON:0000922!9.17e-07!612|ontology_enrichment_uberon_v019=UBERON:0000948;6.10e-10;22!UBERON:0007100;1.70e-09;25!UBERON:0004573;3.45e-09;33!UBERON:0004571;3.45e-09;33!UBERON:0004905;4.28e-07;8!UBERON:0000982;4.28e-07;8!UBERON:0004770;4.28e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0002385,4.57e-19,64;UBERON:0001015,4.57e-19,64;UBERON:0000383,4.57e-19,64;UBERON:0001134,7.48e-19,62;UBERON:0002036,7.48e-19,62;UBERON:0003082,7.48e-19,62;UBERON:0003104,5.50e-18,160;UBERON:0009142,5.50e-18,160;UBERON:0005256,3.51e-17,122;UBERON:0002329,8.88e-15,71;UBERON:0003059,8.88e-15,71;UBERON:0007282,8.88e-15,71;UBERON:0004290,8.88e-15,71;UBERON:0009618,8.88e-15,71;UBERON:0003077,2.15e-14,72;UBERON:0007285,2.15e-14,72;UBERON:0007524,5.06e-14,73;UBERON:0000486,1.28e-13,83;UBERON:0007503,4.35e-13,78;UBERON:0000926,6.90e-12,315;UBERON:0004120,6.90e-12,315;UBERON:0006603,6.90e-12,315;UBERON:0002204,2.12e-11,167;UBERON:0004872,3.68e-11,83;UBERON:0003914,9.88e-11,117;UBERON:0000948,2.90e-10,24;UBERON:0005498,2.90e-10,24;UBERON:0004140,2.90e-10,24;UBERON:0009881,2.90e-10,24;UBERON:0004141,2.90e-10,24;UBERON:0003084,2.90e-10,24;UBERON:0007005,2.90e-10,24;UBERON:0004139,2.90e-10,24;UBERON:0004291,2.90e-10,24;UBERON:0000490,2.91e-10,148;UBERON:0004573,6.97e-10,33;UBERON:0004571,6.97e-10,33;UBERON:0007100,7.85e-10,27;UBERON:0002100,2.20e-09,199;UBERON:0001637,6.33e-09,42;UBERON:0003509,6.33e-09,42;UBERON:0004572,6.33e-09,42;UBERON:0001009,2.72e-08,112;UBERON:0004535,3.28e-08,109;UBERON:0004905,3.11e-07,8;UBERON:0000982,3.11e-07,8;UBERON:0004770,3.11e-07,8;UBERON:0000055,5.49e-07,68;UBERON:0007500,7.44e-07,59;UBERON:0001981,7.44e-07,59;UBERON:0004537,7.44e-07,59;UBERON:0006965,7.44e-07,59|phase1_expression=0,0.214100523890983,0.422863212287913,0,0,1.74467704820074,0,0.631719873426831,0.522371256399677,1.96587149201207,0.697801167972428,0.218441372130172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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5918 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9867 | |||
|TSSclassifier=S | |||
|UniProt=P49788 | |||
|association_with_transcript=-49bp_to_ENST00000237696_5end | |||
|description=CAGE_peak_2_at_RARRES1_5end | |||
|id=chr3:158450534..158450591,- | |||
|ontology_enrichment_celltype=CL:0000187!6.57e-19!54;CL:0000680!1.52e-18!57;CL:0000056!1.52e-18!57;CL:0000355!1.52e-18!57;CL:0000183!8.40e-18!59;CL:0000192!3.12e-16!42;CL:0000514!3.12e-16!42;CL:0000222!2.93e-15!119;CL:0000393!5.86e-15!60;CL:0000211!5.86e-15!60;CL:0000359!6.10e-12!32;CL:0000055!1.83e-09!180;CL:0002494!1.55e-08!16 | |||
|ontology_enrichment_celltype_v019=CL:0000192;8.28e-13;43!CL:0000359;8.04e-12;32!CL:0000187;3.30e-11;55!CL:0000393;8.68e-10;61!CL:0000211;8.68e-10;61!CL:0002494;9.95e-09;16!CL:0000077;1.10e-07;19!CL:0000235;2.43e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,9.53e-21,55;CL:0000680,4.95e-20,58;CL:0000056,4.95e-20,58;CL:0000355,4.95e-20,58;CL:0000192,1.15e-17,43;CL:0000514,1.15e-17,43;CL:0000393,2.09e-17,61;CL:0000211,2.09e-17,61;CL:0000222,8.18e-17,121;CL:0000359,1.76e-12,32;CL:0002494,7.17e-09,16;CL:0000077,1.14e-07,19;CL:0000235,2.25e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000514;8.28e-13;43!CL:0000355;1.08e-10;58 | |||
|ontology_enrichment_disease=DOID:2394!8.95e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.15e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.47e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0002385!2.61e-19!63;UBERON:0001015!2.61e-19!63;UBERON:0000383!2.61e-19!63;UBERON:0001134!1.42e-18!61;UBERON:0002036!1.42e-18!61;UBERON:0003082!1.42e-18!61;UBERON:0005256!9.48e-17!143;UBERON:0000481!1.48e-14!347;UBERON:0004290!1.84e-14!70;UBERON:0000914!2.60e-13!83;UBERON:0002329!2.60e-13!83;UBERON:0003077!2.60e-13!83;UBERON:0003059!2.60e-13!83;UBERON:0007282!2.60e-13!83;UBERON:0009618!2.60e-13!83;UBERON:0007285!2.60e-13!83;UBERON:0000486!5.68e-13!82;UBERON:0003104!1.94e-12!238;UBERON:0009142!1.94e-12!238;UBERON:0000926!2.88e-12!448;UBERON:0004120!2.88e-12!448;UBERON:0006603!2.88e-12!448;UBERON:0000490!4.58e-12!138;UBERON:0003914!6.12e-12!118;UBERON:0004872!1.16e-11!84;UBERON:0000948!2.38e-11!24;UBERON:0005498!2.38e-11!24;UBERON:0004140!2.38e-11!24;UBERON:0009881!2.38e-11!24;UBERON:0004141!2.38e-11!24;UBERON:0003084!2.38e-11!24;UBERON:0007005!2.38e-11!24;UBERON:0004139!2.38e-11!24;UBERON:0004291!2.38e-11!24;UBERON:0007100!4.16e-11!27;UBERON:0000477!7.79e-10!286;UBERON:0002100!1.80e-09!216;UBERON:0003103!4.41e-09!69;UBERON:0002204!7.50e-09!167;UBERON:0001009!1.78e-08!113;UBERON:0000119!2.50e-08!312;UBERON:0004535!2.84e-08!110;UBERON:0000483!3.77e-08!309;UBERON:0001637!4.88e-08!42;UBERON:0003509!4.88e-08!42;UBERON:0004572!4.88e-08!42;UBERON:0000468!8.01e-08!659;UBERON:0000467!8.38e-08!625;UBERON:0004573!9.01e-08!33;UBERON:0004571!9.01e-08!33;UBERON:0002049!9.83e-08!79;UBERON:0007798!9.83e-08!79;UBERON:0004111!1.07e-07!241;UBERON:0000480!1.13e-07!626;UBERON:0001048!1.62e-07!168;UBERON:0000055!3.67e-07!69;UBERON:0002050!5.09e-07!605;UBERON:0005423!5.09e-07!605;UBERON:0000923!7.40e-07!604;UBERON:0005291!7.40e-07!604;UBERON:0006598!7.40e-07!604;UBERON:0002532!7.40e-07!604;UBERON:0000922!9.17e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;6.10e-10;22!UBERON:0007100;1.70e-09;25!UBERON:0004573;3.45e-09;33!UBERON:0004571;3.45e-09;33!UBERON:0004905;4.28e-07;8!UBERON:0000982;4.28e-07;8!UBERON:0004770;4.28e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002385,4.57e-19,64;UBERON:0001015,4.57e-19,64;UBERON:0000383,4.57e-19,64;UBERON:0001134,7.48e-19,62;UBERON:0002036,7.48e-19,62;UBERON:0003082,7.48e-19,62;UBERON:0003104,5.50e-18,160;UBERON:0009142,5.50e-18,160;UBERON:0005256,3.51e-17,122;UBERON:0002329,8.88e-15,71;UBERON:0003059,8.88e-15,71;UBERON:0007282,8.88e-15,71;UBERON:0004290,8.88e-15,71;UBERON:0009618,8.88e-15,71;UBERON:0003077,2.15e-14,72;UBERON:0007285,2.15e-14,72;UBERON:0007524,5.06e-14,73;UBERON:0000486,1.28e-13,83;UBERON:0007503,4.35e-13,78;UBERON:0000926,6.90e-12,315;UBERON:0004120,6.90e-12,315;UBERON:0006603,6.90e-12,315;UBERON:0002204,2.12e-11,167;UBERON:0004872,3.68e-11,83;UBERON:0003914,9.88e-11,117;UBERON:0000948,2.90e-10,24;UBERON:0005498,2.90e-10,24;UBERON:0004140,2.90e-10,24;UBERON:0009881,2.90e-10,24;UBERON:0004141,2.90e-10,24;UBERON:0003084,2.90e-10,24;UBERON:0007005,2.90e-10,24;UBERON:0004139,2.90e-10,24;UBERON:0004291,2.90e-10,24;UBERON:0000490,2.91e-10,148;UBERON:0004573,6.97e-10,33;UBERON:0004571,6.97e-10,33;UBERON:0007100,7.85e-10,27;UBERON:0002100,2.20e-09,199;UBERON:0001637,6.33e-09,42;UBERON:0003509,6.33e-09,42;UBERON:0004572,6.33e-09,42;UBERON:0001009,2.72e-08,112;UBERON:0004535,3.28e-08,109;UBERON:0004905,3.11e-07,8;UBERON:0000982,3.11e-07,8;UBERON:0004770,3.11e-07,8;UBERON:0000055,5.49e-07,68;UBERON:0007500,7.44e-07,59;UBERON:0001981,7.44e-07,59;UBERON:0004537,7.44e-07,59;UBERON:0006965,7.44e-07,59 | |||
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| |||
|short_description=p2@RARRES1 | |||
}} |
Revision as of 22:26, 12 September 2013
Short description: | p2@RARRES1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RARRES1_5end |
Coexpression cluster: | NA |
Association with transcript: | -49bp_to_ENST00000237696_5end |
EntrezGene: | RARRES1 |
HGNC: | 9867 |
UniProt: | P49788 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 9.53e-21 | 55 |
muscle precursor cell | 4.95e-20 | 58 |
myoblast | 4.95e-20 | 58 |
multi-potent skeletal muscle stem cell | 4.95e-20 | 58 |
smooth muscle cell | 1.15e-17 | 43 |
smooth muscle myoblast | 1.15e-17 | 43 |
electrically responsive cell | 2.09e-17 | 61 |
electrically active cell | 2.09e-17 | 61 |
mesodermal cell | 8.18e-17 | 121 |
vascular associated smooth muscle cell | 1.76e-12 | 32 |
cardiocyte | 7.17e-09 | 16 |
mesothelial cell | 1.14e-07 | 19 |
macrophage | 2.25e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.47e-09 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.