FFCP PHASE1:Hg19::chr4:106473640..106473661,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54848|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25968|TSSclassifier=W|UniProt=Q9NXL2,C9JIB4|association_with_transcript=-115bp_to_ENST00000265154,NM_001242729,NM_017700,uc003hxu.2_5end|description=CAGE_peak_5_at_ARHGEF38_5end|id=chr4:106473640..106473661,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002231;2.55e-07;3|ontology_enrichment_celltype_v019_2=CL:0002231,3.35e-07,3|ontology_enrichment_development_v019=UBERON:0008425;2.47e-19;1!UBERON:0007297;2.37e-10;2!UBERON:0009847;2.55e-07;3!UBERON:0003353;2.55e-07;3|ontology_enrichment_disease=DOID:305!1.24e-11!106;DOID:0050687!6.47e-08!143;DOID:4468!1.06e-07!2;DOID:3493!1.37e-07!2;DOID:1325!2.49e-07!7;DOID:3904!2.49e-07!7;DOID:4929!6.12e-07!2;DOID:299!7.64e-07!25|ontology_enrichment_disease_v019=DOID:4468;2.37e-10;2|ontology_enrichment_disease_v019_2=DOID:4468,1.72e-10,2|ontology_enrichment_uberon=UBERON:0001007!1.27e-17!155;UBERON:0001555!1.27e-17!155;UBERON:0007026!1.27e-17!155;UBERON:0004921!1.40e-17!129;UBERON:0004185!1.40e-17!129;UBERON:0004119!2.11e-15!169;UBERON:0000925!2.11e-15!169;UBERON:0006595!2.11e-15!169;UBERON:0000077!2.66e-12!130;UBERON:0005153!1.52e-11!37;UBERON:0008947!1.02e-10!38;UBERON:0003258!1.02e-10!38;UBERON:0000464!1.37e-10!104;UBERON:0002294!1.68e-10!7;UBERON:0001173!1.68e-10!7;UBERON:0004912!1.68e-10!7;UBERON:0005409!3.58e-10!35;UBERON:0000466!1.30e-09!126;UBERON:0000160!2.05e-09!27;UBERON:0002110!3.74e-09!3;UBERON:0006242!3.74e-09!3;UBERON:0005911!7.70e-09!82;UBERON:0001041!1.29e-08!98;UBERON:0002048!6.58e-08!22;UBERON:0000117!6.58e-08!22;UBERON:0000171!6.58e-08!22;UBERON:0000170!6.58e-08!22;UBERON:0005597!6.58e-08!22;UBERON:0000118!6.58e-08!22;UBERON:0003101!1.01e-07!22;UBERON:0000079!1.01e-07!22;UBERON:0005157!1.44e-07!51;UBERON:0005177!2.65e-07!107;UBERON:0007023!2.71e-07!115;UBERON:0005178!2.97e-07!34;UBERON:0002224!2.97e-07!34;UBERON:0001004!3.79e-07!72;UBERON:0003127!4.24e-07!2;UBERON:0005181!5.45e-07!35;UBERON:0002108!5.57e-07!14;UBERON:0000065!6.95e-07!53|ontology_enrichment_uberon_v019=UBERON:0001301;2.47e-19;1!UBERON:0003101;5.32e-08;22!UBERON:0000079;5.32e-08;22!UBERON:0002367;1.67e-07;11!UBERON:0010147;1.67e-07;11!UBERON:0002114;2.55e-07;2!UBERON:0006947;2.55e-07;3!UBERON:0004054;2.55e-07;3!UBERON:0003937;5.98e-07;12!UBERON:0005399;5.98e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0001301,1.08e-19,1;UBERON:0005153,3.05e-12,37;UBERON:0005157,1.18e-09,47;UBERON:0003101,5.79e-08,22;UBERON:0000079,5.79e-08,22;UBERON:0006947,1.93e-07,3;UBERON:0004054,1.93e-07,3;UBERON:0002367,2.16e-07,11;UBERON:0010147,2.16e-07,11;UBERON:0009846,2.16e-07,11;UBERON:0003353,2.16e-07,11;UBERON:0004902,2.16e-07,11;UBERON:0003820,2.16e-07,11;UBERON:0009847,2.16e-07,11;UBERON:0002114,2.47e-07,2;UBERON:0003937,7.59e-07,12;UBERON:0005399,7.59e-07,12|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220587945464788,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,1.72183813960359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20859449591622,0,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0.537063524026827,0,0.0986434056369336,0,0,0,0,0,0,1.66173999992772,0,0,0.254253650292766,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89898258075224,0.652931232636591,0,0,0.995261931078505,0.530745387020035,0.611030144933625,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92199335066233,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0.0801588202515337,0.426905989478705,0,0.864542502924636,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49730843868477,0.472091293214983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533937062838473,2.35806457649499,0.828478110694391,0,0,0,0.638341257770182,0,0,0,0,0.628216385000937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54848 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25968 | |||
|TSSclassifier=W | |||
|UniProt=Q9NXL2,C9JIB4 | |||
|association_with_transcript=-115bp_to_ENST00000265154,NM_001242729,NM_017700,uc003hxu.2_5end | |||
|description=CAGE_peak_5_at_ARHGEF38_5end | |||
|id=chr4:106473640..106473661,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002231;2.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002231,3.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008425;2.47e-19;1!UBERON:0007297;2.37e-10;2!UBERON:0009847;2.55e-07;3!UBERON:0003353;2.55e-07;3 | |||
|ontology_enrichment_disease=DOID:305!1.24e-11!106;DOID:0050687!6.47e-08!143;DOID:4468!1.06e-07!2;DOID:3493!1.37e-07!2;DOID:1325!2.49e-07!7;DOID:3904!2.49e-07!7;DOID:4929!6.12e-07!2;DOID:299!7.64e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:4468;2.37e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,1.72e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0001007!1.27e-17!155;UBERON:0001555!1.27e-17!155;UBERON:0007026!1.27e-17!155;UBERON:0004921!1.40e-17!129;UBERON:0004185!1.40e-17!129;UBERON:0004119!2.11e-15!169;UBERON:0000925!2.11e-15!169;UBERON:0006595!2.11e-15!169;UBERON:0000077!2.66e-12!130;UBERON:0005153!1.52e-11!37;UBERON:0008947!1.02e-10!38;UBERON:0003258!1.02e-10!38;UBERON:0000464!1.37e-10!104;UBERON:0002294!1.68e-10!7;UBERON:0001173!1.68e-10!7;UBERON:0004912!1.68e-10!7;UBERON:0005409!3.58e-10!35;UBERON:0000466!1.30e-09!126;UBERON:0000160!2.05e-09!27;UBERON:0002110!3.74e-09!3;UBERON:0006242!3.74e-09!3;UBERON:0005911!7.70e-09!82;UBERON:0001041!1.29e-08!98;UBERON:0002048!6.58e-08!22;UBERON:0000117!6.58e-08!22;UBERON:0000171!6.58e-08!22;UBERON:0000170!6.58e-08!22;UBERON:0005597!6.58e-08!22;UBERON:0000118!6.58e-08!22;UBERON:0003101!1.01e-07!22;UBERON:0000079!1.01e-07!22;UBERON:0005157!1.44e-07!51;UBERON:0005177!2.65e-07!107;UBERON:0007023!2.71e-07!115;UBERON:0005178!2.97e-07!34;UBERON:0002224!2.97e-07!34;UBERON:0001004!3.79e-07!72;UBERON:0003127!4.24e-07!2;UBERON:0005181!5.45e-07!35;UBERON:0002108!5.57e-07!14;UBERON:0000065!6.95e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;2.47e-19;1!UBERON:0003101;5.32e-08;22!UBERON:0000079;5.32e-08;22!UBERON:0002367;1.67e-07;11!UBERON:0010147;1.67e-07;11!UBERON:0002114;2.55e-07;2!UBERON:0006947;2.55e-07;3!UBERON:0004054;2.55e-07;3!UBERON:0003937;5.98e-07;12!UBERON:0005399;5.98e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,1.08e-19,1;UBERON:0005153,3.05e-12,37;UBERON:0005157,1.18e-09,47;UBERON:0003101,5.79e-08,22;UBERON:0000079,5.79e-08,22;UBERON:0006947,1.93e-07,3;UBERON:0004054,1.93e-07,3;UBERON:0002367,2.16e-07,11;UBERON:0010147,2.16e-07,11;UBERON:0009846,2.16e-07,11;UBERON:0003353,2.16e-07,11;UBERON:0004902,2.16e-07,11;UBERON:0003820,2.16e-07,11;UBERON:0009847,2.16e-07,11;UBERON:0002114,2.47e-07,2;UBERON:0003937,7.59e-07,12;UBERON:0005399,7.59e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220587945464788,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,1.72183813960359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20859449591622,0,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0.537063524026827,0,0.0986434056369336,0,0,0,0,0,0,1.66173999992772,0,0,0.254253650292766,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89898258075224,0.652931232636591,0,0,0.995261931078505,0.530745387020035,0.611030144933625,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92199335066233,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0.0801588202515337,0.426905989478705,0,0.864542502924636,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49730843868477,0.472091293214983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533937062838473,2.35806457649499,0.828478110694391,0,0,0,0.638341257770182,0,0,0,0,0.628216385000937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0.739280431085226,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,1.33477682270483,0.706437835654626,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0.883352102537187,0.731507549893617,0,0,0,0.485710993059139,0,0,0,1.35535298446752,0,0.905777061400041,0.694567422971502,0.437119121007915,0.940634592723046,0,0.707029641304878,0,0,0,0,0,0,0,0,0,0.320965466756673,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0.213233981900981,0,0,0,0,0.0636471582781649,0,0,0,0,0.573777643141411,0.332660356546013,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p5@ARHGEF38 | |||
}} |
Revision as of 01:56, 13 September 2013
Short description: | p5@ARHGEF38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_ARHGEF38_5end |
Coexpression cluster: | NA |
Association with transcript: | -115bp_to_ENST00000265154, NM_001242729, NM_017700, uc003hxu.2_5end |
EntrezGene: | ARHGEF38 |
HGNC: | 25968 |
UniProt: | Q9NXL2C9JIB4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of prostate | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
epididymis | 1.08e-19 | 1 |
epithelial bud | 3.05e-12 | 37 |
epithelial fold | 1.18e-09 | 47 |
male organism | 5.79e-08 | 22 |
male reproductive system | 5.79e-08 | 22 |
male genital duct | 1.93e-07 | 3 |
internal male genitalia | 1.93e-07 | 3 |
prostate gland | 2.16e-07 | 11 |
male accessory sex gland | 2.16e-07 | 11 |
embryonic cloacal epithelium | 2.16e-07 | 11 |
epithelium of hindgut | 2.16e-07 | 11 |
urogenital sinus epithelium | 2.16e-07 | 11 |
prostate bud | 2.16e-07 | 11 |
prostate field | 2.16e-07 | 11 |
duodenum | 2.47e-07 | 2 |
sex gland | 7.59e-07 | 12 |
male reproductive gland | 7.59e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 1.72e-10 | 2 |
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