FFCP PHASE1:Hg19::chr4:151936416..151936444,-: Difference between revisions
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{{FFCP | 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971438,2.29280684514135,26.4662394328511,1.95858995393344,0,2.48024155801421,2.21955335678674,1.64092442705466,19.1890218400014,6.94695649745012,13.3662145713312,12.3929554810407,9.10693120993088,21.1858744997859,19.4228993355722,50.3133442886368,10.1120701985408,15.2108863573629,2.22934412268644,2.10706172228178,1.44700101838268,7.68259965745793,15.5723962648897,10.8320468133709,10.0553977546241,9.24898138935504,21.0026505717184,3.45484145949794,26.2763428337878,7.3620840501956,25.440191488969,21.2721808423669,5.73732298598512,0.801711364730253,15.1267799839017,10.4138271027309,11.7514142508396,24.0927320939355,2.83996801753357,3.40853619036631,23.709674810692,12.1426640328347,1.5510319283216,0,9.39585627101456,19.3355960222029,31.5767425704078,0.647428837187895,2.36124455769368,2.3196288626764,8.74279787506451,17.77939922312,12.5338988351662,4.28112326799247,30.947226478675,13.3028025261969,15.5491728873674,22.9207249580596,16.3919670377968,13.6392015944842,2.20633489578515,15.7903286558089,1.17785080268967,3.86160320425212,1.6906229103336,2.20905249094162,12.0299415014213,10.7644672915874,11.193409463592,14.8199769042696,14.1157948686277,22.3873413062779,19.719082482656,23.8539227370361,2.29343333042322,12.1484102888752,1.42782129400921,1.30905207102113,28.5674493878316,0,0,0.432626562123789,8.70548331362045,10.7080260524422,5.32133704248035,11.6267265905859,7.21486994217013,14.9788686241797,21.5608483791443,3.56159881625725,2.14371304124943,2.48750831837634,2.68925789240928,15.5660806787716,15.7122524766069,27.8378201393186,38.0517998633609,4.59740636580515,17.4393213682172,22.8392423522788,14.3693053611994,5.4757328173645,31.184000545754,21.946994850159,10.9777917660184,7.57050398082063,18.5705581827225,0,6.28776414746108,23.4640942403454,9.16810831371498,6.91723503136755,6.65756774185513,12.8815227898257,12.1816027075229|short_description=p2@LRBA}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=987 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1742 | |||
|TSSclassifier=S | |||
|UniProt=E9PEM5,P50851,Q6P1X2 | |||
|association_with_transcript=0bp_to_ENST00000507224,ENST00000510413,ENST00000514435,NM_001199282,uc003ilu.3,uc003ilx.1_5end | |||
|description=CAGE_peak_2_at_LRBA_5end | |||
|id=chr4:151936416..151936444,- | |||
|ontology_enrichment_celltype=CL:0000542!4.77e-21!53;CL:0000051!4.77e-21!53;CL:0000838!7.39e-21!52;CL:0000791!8.38e-11!18;CL:0000789!8.38e-11!18;CL:0002420!8.38e-11!18;CL:0002419!8.38e-11!18;CL:0000790!8.38e-11!18;CL:0000084!1.36e-10!25;CL:0000827!1.36e-10!25;CL:0000945!6.90e-10!24;CL:0000826!6.90e-10!24;CL:0000066!3.30e-08!254;CL:0000236!1.64e-07!14;CL:0000625!1.72e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.13e-12;53!CL:0000791;6.78e-11;18!CL:0000789;6.78e-11;18!CL:0002419;6.78e-11;18!CL:0000084;1.03e-10;25!CL:0000945;5.24e-10;24!CL:0000625;1.53e-07;11!CL:0000236;2.56e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.09e-21,53;CL:0000051,4.09e-21,53;CL:0000838,6.34e-21,52;CL:0000791,7.79e-11,18;CL:0000789,7.79e-11,18;CL:0002420,7.79e-11,18;CL:0002419,7.79e-11,18;CL:0000790,7.79e-11,18;CL:0000084,1.27e-10,25;CL:0000827,1.27e-10,25;CL:0000945,6.46e-10,24;CL:0000826,6.46e-10,24;CL:0000066,1.52e-08,253;CL:0000236,1.56e-07,14;CL:0000625,1.64e-07,11;CL:0002076,5.28e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000051;1.13e-12;53!CL:0000790;6.78e-11;18 | |||
|ontology_enrichment_disease=DOID:305!5.21e-12!106;DOID:162!7.64e-12!235;DOID:14566!1.65e-10!239;DOID:0050687!1.06e-08!143;DOID:0050686!3.95e-08!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.92e-12,106;DOID:162,8.02e-12,235;DOID:14566,1.52e-10,239;DOID:0050687,8.34e-09,143;DOID:0050686,3.56e-08,137 | |||
|ontology_enrichment_uberon=UBERON:0001007!3.22e-09!155;UBERON:0001555!3.22e-09!155;UBERON:0007026!3.22e-09!155;UBERON:0004119!4.46e-09!169;UBERON:0000925!4.46e-09!169;UBERON:0006595!4.46e-09!169;UBERON:0004921!8.79e-09!129;UBERON:0004185!8.79e-09!129;UBERON:0001004!4.74e-08!72 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,5.72e-09,145;UBERON:0001555,5.72e-09,145;UBERON:0007026,5.72e-09,145;UBERON:0004921,6.05e-09,118;UBERON:0004119,1.43e-08,160;UBERON:0000925,1.43e-08,160;UBERON:0006595,1.43e-08,160;UBERON:0001004,3.40e-07,74;UBERON:0001041,5.30e-07,87 | |||
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| |||
|short_description=p2@LRBA | |||
}} |
Revision as of 02:45, 13 September 2013
Short description: | p2@LRBA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LRBA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000507224, ENST00000510413, ENST00000514435, NM_001199282, uc003ilu.3, uc003ilx.1_5end |
EntrezGene: | LRBA |
HGNC: | 1742 |
UniProt: | E9PEM5P50851Q6P1X2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.09e-21 | 53 |
common lymphoid progenitor | 4.09e-21 | 53 |
lymphoid lineage restricted progenitor cell | 6.34e-21 | 52 |
mature alpha-beta T cell | 7.79e-11 | 18 |
alpha-beta T cell | 7.79e-11 | 18 |
immature T cell | 7.79e-11 | 18 |
mature T cell | 7.79e-11 | 18 |
immature alpha-beta T cell | 7.79e-11 | 18 |
T cell | 1.27e-10 | 25 |
pro-T cell | 1.27e-10 | 25 |
lymphocyte of B lineage | 6.46e-10 | 24 |
pro-B cell | 6.46e-10 | 24 |
epithelial cell | 1.52e-08 | 253 |
B cell | 1.56e-07 | 14 |
CD8-positive, alpha-beta T cell | 1.64e-07 | 11 |
endo-epithelial cell | 5.28e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
digestive system | 5.72e-09 | 145 |
digestive tract | 5.72e-09 | 145 |
primitive gut | 5.72e-09 | 145 |
subdivision of digestive tract | 6.05e-09 | 118 |
endoderm-derived structure | 1.43e-08 | 160 |
endoderm | 1.43e-08 | 160 |
presumptive endoderm | 1.43e-08 | 160 |
respiratory system | 3.40e-07 | 74 |
foregut | 5.30e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.92e-12 | 106 |
cancer | 8.02e-12 | 235 |
disease of cellular proliferation | 1.52e-10 | 239 |
cell type cancer | 8.34e-09 | 143 |
organ system cancer | 3.56e-08 | 137 |
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