FFCP PHASE1:Mm9::chr15:102998460..102998477,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71726|HGNC=|MCL_coexpression_id=114|UniProt=|association_with_transcript=-47bp_to_uc007xxi.1_5end|description=CAGE_peak_2_at_Smug1_5end|id=chr15:102998460..102998477,-|ontology_enrichment_celltype=CL:0000540!1.04e-11!33;CL:0000047!1.04e-11!33;CL:0000031!1.04e-11!33;CL:0000404!1.04e-11!33;CL:0000393!1.65e-08!39;CL:0000211!1.65e-08!39;CL:0000221!3.92e-07!44;CL:0000133!3.92e-07!44;CL:0002319!6.12e-07!43;CL:0000107!8.59e-07!9|ontology_enrichment_celltype_v019_2=CL:0000540,5.77e-14,33;CL:0000047,5.77e-14,33;CL:0000031,5.77e-14,33;CL:0000404,5.77e-14,33;CL:0000107,1.69e-13,9;CL:0000393,2.08e-11,39;CL:0000211,2.08e-11,39;CL:0002319,4.20e-10,43;CL:0000221,8.17e-10,44;CL:0000133,8.17e-10,44;CL:0002612,1.18e-09,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.04e-09!73;UBERON:0005743!5.04e-09!73;UBERON:0000073!1.95e-08!75;UBERON:0001016!1.95e-08!75;UBERON:0004121!7.84e-08!102;UBERON:0000924!7.84e-08!102;UBERON:0006601!7.84e-08!102;UBERON:0002346!1.11e-07!71;UBERON:0003075!1.11e-07!71;UBERON:0007284!1.11e-07!71;UBERON:0002410!8.59e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0002410,1.69e-13,9;UBERON:0001017,2.08e-13,73;UBERON:0001016,6.10e-13,75;UBERON:0010313,2.91e-11,3;UBERON:0002342,2.91e-11,3;UBERON:0002005,2.91e-11,3;UBERON:0005428,2.91e-11,3;UBERON:0005062,2.91e-11,3;UBERON:0000013,5.74e-11,3;UBERON:0000010,6.49e-11,11;UBERON:0004121,1.38e-10,95;UBERON:0000924,1.38e-10,95;UBERON:0006601,1.38e-10,95;UBERON:0002257,1.18e-09,3;UBERON:0003076,1.02e-08,12;UBERON:0003057,1.02e-08,12;UBERON:0002240,2.99e-08,6;UBERON:0005174,2.99e-08,6;UBERON:0001137,2.99e-08,6;UBERON:0002346,3.98e-08,64;UBERON:0003075,3.98e-08,64;UBERON:0007284,3.98e-08,64;UBERON:0001896,2.60e-07,2;UBERON:0002298,2.60e-07,2;UBERON:0005290,2.60e-07,2;UBERON:0010096,2.60e-07,2;UBERON:0010371,9.37e-07,73|phase1_expression=0.160148847104794,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0,1.26766280701236,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0.883474163806454,0.367472397644862,0.383381884072945,1.83843757322004,1.10115880999389,0.383062014255563,1.53606533256243,0.131886287730194,0.548925861614458,0,0.279182999001381,0,0.15279824777681,1.17851434189467,1.13897344639282,4.28718725398191,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0.216491041011214,0,0,0.11418387971906,0,0,0.867426633830679,0,0,0.150722640552623,0.352766121407114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3481157546434,3.66000482254901,0.628271760564322,0,0.255715457330331,1.0389402227978,1.62241263067758,0,0,0,0.841767423545896,0,0,0,0.452114453507145,0.340182495756639,0.512454881139399,0.655912071918102,3.10444044886819,0,0.378212160335639,0,0.657587197282725,0.278047249225598,0,0,0.796137067273973,0,0,0,0.621377317606506,0.234526059981096,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0,0.330418782983798,0,0.639864751605702,1.16118335930219,1.9330119198314,1.21010114774006,0.667134131534611,0.380451252225118,0,0.329397909448022,0.251335208800269,0,0,0,0,0,0,0.456994050438915,0,0,0.387904974335251,0.0701358198903186,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.947457058852424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0871576698413,1.75817529888305,0,0,15.4599027513966,16.7888660047555,13.1408272617007,0,0.222798674082394,0.566153061577665,6.07216052512342,7.01414058987149,7.11518000303742,0,0,0.534196811001766,0.162886959353576,0,0,0.242780636154981,0,0.188605079755898,0,0,0.258428293168221,0.363533729477506,0,0,0,0,0,0,0.258717367565509,0,0.177340233642274,0,0,0,0,0.42366414172764,0,0,0,0,0,0,0.291480836629851,1.29797711407357,0,0,0.370389054739423,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0.432021363287205,0,0,0,0,0,0.388844919875379,0,0,0.149516546043979,0,0,0,0,0,0.13020438484395,0,0,0,0,0.202725215290164,0.102710957164827,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0,0.460325236507177,0,0.171853182343688,0.685082519770642,0.755393897389701,0,0,0.453142408984205,0,3.52876981786201,3.59122386060928,1.19513524027894,1.21553358534147,0.209613162627982,0.735374033800057,0,1.03017528619447,0.64183841918363,0.252697211763798,0,0.188626341386076,0.280924522409647,0.384150914429216,0.0574354689556133,0,0.115884325944855,0.192909220463705,0,0.588795680537589,0,0.177475806159338,0,0.436039249896986,0.0941093804153306,0.25384382367503,0.365855945745545,0.526139422875686,0,0,0.355905054372522,0.591026894253381,0,0,0.771626443924566,0,0.233931608445408,0.214871054048298,0.191288332068843,0,0|short_description=p2@Smug1}} | ||
|EntrezGene=71726 | |||
|HGNC= | |||
|MCL_coexpression_id=114 | |||
|UniProt= | |||
|association_with_transcript=-47bp_to_uc007xxi.1_5end | |||
|description=CAGE_peak_2_at_Smug1_5end | |||
|id=chr15:102998460..102998477,- | |||
|ontology_enrichment_celltype=CL:0000540!1.04e-11!33;CL:0000047!1.04e-11!33;CL:0000031!1.04e-11!33;CL:0000404!1.04e-11!33;CL:0000393!1.65e-08!39;CL:0000211!1.65e-08!39;CL:0000221!3.92e-07!44;CL:0000133!3.92e-07!44;CL:0002319!6.12e-07!43;CL:0000107!8.59e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.77e-14,33;CL:0000047,5.77e-14,33;CL:0000031,5.77e-14,33;CL:0000404,5.77e-14,33;CL:0000107,1.69e-13,9;CL:0000393,2.08e-11,39;CL:0000211,2.08e-11,39;CL:0002319,4.20e-10,43;CL:0000221,8.17e-10,44;CL:0000133,8.17e-10,44;CL:0002612,1.18e-09,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.04e-09!73;UBERON:0005743!5.04e-09!73;UBERON:0000073!1.95e-08!75;UBERON:0001016!1.95e-08!75;UBERON:0004121!7.84e-08!102;UBERON:0000924!7.84e-08!102;UBERON:0006601!7.84e-08!102;UBERON:0002346!1.11e-07!71;UBERON:0003075!1.11e-07!71;UBERON:0007284!1.11e-07!71;UBERON:0002410!8.59e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002410,1.69e-13,9;UBERON:0001017,2.08e-13,73;UBERON:0001016,6.10e-13,75;UBERON:0010313,2.91e-11,3;UBERON:0002342,2.91e-11,3;UBERON:0002005,2.91e-11,3;UBERON:0005428,2.91e-11,3;UBERON:0005062,2.91e-11,3;UBERON:0000013,5.74e-11,3;UBERON:0000010,6.49e-11,11;UBERON:0004121,1.38e-10,95;UBERON:0000924,1.38e-10,95;UBERON:0006601,1.38e-10,95;UBERON:0002257,1.18e-09,3;UBERON:0003076,1.02e-08,12;UBERON:0003057,1.02e-08,12;UBERON:0002240,2.99e-08,6;UBERON:0005174,2.99e-08,6;UBERON:0001137,2.99e-08,6;UBERON:0002346,3.98e-08,64;UBERON:0003075,3.98e-08,64;UBERON:0007284,3.98e-08,64;UBERON:0001896,2.60e-07,2;UBERON:0002298,2.60e-07,2;UBERON:0005290,2.60e-07,2;UBERON:0010096,2.60e-07,2;UBERON:0010371,9.37e-07,73 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0,1.26766280701236,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0.883474163806454,0.367472397644862,0.383381884072945,1.83843757322004,1.10115880999389,0.383062014255563,1.53606533256243,0.131886287730194,0.548925861614458,0,0.279182999001381,0,0.15279824777681,1.17851434189467,1.13897344639282,4.28718725398191,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0.216491041011214,0,0,0.11418387971906,0,0,0.867426633830679,0,0,0.150722640552623,0.352766121407114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3481157546434,3.66000482254901,0.628271760564322,0,0.255715457330331,1.0389402227978,1.62241263067758,0,0,0,0.841767423545896,0,0,0,0.452114453507145,0.340182495756639,0.512454881139399,0.655912071918102,3.10444044886819,0,0.378212160335639,0,0.657587197282725,0.278047249225598,0,0,0.796137067273973,0,0,0,0.621377317606506,0.234526059981096,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0,0.330418782983798,0,0.639864751605702,1.16118335930219,1.9330119198314,1.21010114774006,0.667134131534611,0.380451252225118,0,0.329397909448022,0.251335208800269,0,0,0,0,0,0,0.456994050438915,0,0,0.387904974335251,0.0701358198903186,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.947457058852424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0871576698413,1.75817529888305,0,0,15.4599027513966,16.7888660047555,13.1408272617007,0,0.222798674082394,0.566153061577665,6.07216052512342,7.01414058987149,7.11518000303742,0,0,0.534196811001766,0.162886959353576,0,0,0.242780636154981,0,0.188605079755898,0,0,0.258428293168221,0.363533729477506,0,0,0,0,0,0,0.258717367565509,0,0.177340233642274,0,0,0,0,0.42366414172764,0,0,0,0,0,0,0.291480836629851,1.29797711407357,0,0,0.370389054739423,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0.432021363287205,0,0,0,0,0,0.388844919875379,0,0,0.149516546043979,0,0,0,0,0,0.13020438484395,0,0,0,0,0.202725215290164,0.102710957164827,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0,0.460325236507177,0,0.171853182343688,0.685082519770642,0.755393897389701,0,0,0.453142408984205,0,3.52876981786201,3.59122386060928,1.19513524027894,1.21553358534147,0.209613162627982,0.735374033800057,0,1.03017528619447,0.64183841918363,0.252697211763798,0,0.188626341386076,0.280924522409647,0.384150914429216,0.0574354689556133,0,0.115884325944855,0.192909220463705,0,0.588795680537589,0,0.177475806159338,0,0.436039249896986,0.0941093804153306,0.25384382367503,0.365855945745545,0.526139422875686,0,0,0.355905054372522,0.591026894253381,0,0,0.771626443924566,0,0.233931608445408,0.214871054048298,0.191288332068843,0,0 | |||
|short_description=p2@Smug1 | |||
}} |
Revision as of 10:09, 13 September 2013
Short description: | p2@Smug1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Smug1_5end |
Coexpression cluster: | MCL_coexpression_mm9:114 |
Association with transcript: | -47bp_to_uc007xxi.1_5end |
EntrezGene: | Smug1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.77e-14 | 33 |
neuronal stem cell | 5.77e-14 | 33 |
neuroblast | 5.77e-14 | 33 |
electrically signaling cell | 5.77e-14 | 33 |
autonomic neuron | 1.69e-13 | 9 |
electrically responsive cell | 2.08e-11 | 39 |
electrically active cell | 2.08e-11 | 39 |
neural cell | 4.20e-10 | 43 |
ectodermal cell | 8.17e-10 | 44 |
neurectodermal cell | 8.17e-10 | 44 |
neuron of the ventral spinal cord | 1.18e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
autonomic nervous system | 1.69e-13 | 9 |
central nervous system | 2.08e-13 | 73 |
nervous system | 6.10e-13 | 75 |
neural crest-derived structure | 2.91e-11 | 3 |
neural crest | 2.91e-11 | 3 |
enteric nervous system | 2.91e-11 | 3 |
vagal neural crest | 2.91e-11 | 3 |
neural fold | 2.91e-11 | 3 |
sympathetic nervous system | 5.74e-11 | 3 |
peripheral nervous system | 6.49e-11 | 11 |
ectoderm-derived structure | 1.38e-10 | 95 |
ectoderm | 1.38e-10 | 95 |
presumptive ectoderm | 1.38e-10 | 95 |
ventral horn of spinal cord | 1.18e-09 | 3 |
posterior neural tube | 1.02e-08 | 12 |
chordal neural plate | 1.02e-08 | 12 |
spinal cord | 2.99e-08 | 6 |
dorsal region element | 2.99e-08 | 6 |
dorsum | 2.99e-08 | 6 |
neurectoderm | 3.98e-08 | 64 |
neural plate | 3.98e-08 | 64 |
presumptive neural plate | 3.98e-08 | 64 |
medulla oblongata | 2.60e-07 | 2 |
brainstem | 2.60e-07 | 2 |
myelencephalon | 2.60e-07 | 2 |
future myelencephalon | 2.60e-07 | 2 |
ecto-epithelium | 9.37e-07 | 73 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.