FFCP PHASE1:Hg19::chr4:41540160..41540196,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22998|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29191|TSSclassifier=S|UniProt=G5EA03|association_with_transcript=0bp_to_ENST00000503057,ENST00000511496,uc003gvz.3,uc003gwa.3_5end|coexpression_cluster_id=C2792|description=CAGE_peak_3_at_LIMCH1_5end|id=chr4:41540160..41540196,+|ontology_enrichment_celltype=CL:0000077!2.76e-11!19|ontology_enrichment_celltype_v019=CL:0000077;6.18e-13;19!CL:0000136;2.18e-07;13|ontology_enrichment_celltype_v019_2=CL:0000077,5.33e-13,19;CL:0000136,1.95e-08,15|ontology_enrichment_development_v019=UBERON:0008947;4.39e-08;29|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.38e-27!115;UBERON:0001049!1.45e-13!57;UBERON:0005068!1.45e-13!57;UBERON:0006241!1.45e-13!57;UBERON:0007135!1.45e-13!57;UBERON:0003075!5.52e-11!86;UBERON:0007284!5.52e-11!86;UBERON:0000064!5.74e-11!219;UBERON:0000477!1.03e-10!286;UBERON:0002780!1.90e-10!41;UBERON:0001890!1.90e-10!41;UBERON:0006240!1.90e-10!41;UBERON:0002346!4.07e-10!90;UBERON:0003080!6.29e-10!42;UBERON:0002616!6.93e-10!59;UBERON:0000955!6.95e-10!69;UBERON:0006238!6.95e-10!69;UBERON:0002020!1.52e-09!34;UBERON:0003528!1.52e-09!34;UBERON:0001017!1.80e-09!82;UBERON:0000475!2.98e-09!365;UBERON:0001893!3.88e-09!34;UBERON:0005743!7.17e-09!86;UBERON:0004111!7.46e-09!241;UBERON:0002791!8.02e-09!33;UBERON:0001869!1.71e-08!32;UBERON:0001737!4.24e-08!9;UBERON:0000025!4.41e-08!194;UBERON:0000073!1.17e-07!94;UBERON:0001016!1.17e-07!94;UBERON:0000062!1.36e-07!511;UBERON:0000481!1.84e-07!347;UBERON:0000468!2.63e-07!659;UBERON:0002619!7.83e-07!22;UBERON:0000153!9.69e-07!129;UBERON:0007811!9.69e-07!129|ontology_enrichment_uberon_v019=UBERON:0001737;1.34e-10;9!UBERON:0001557;1.34e-10;9!UBERON:0003688;3.22e-08;6!UBERON:0002358;3.22e-08;6!UBERON:0003684;3.22e-08;6!UBERON:0001178;3.22e-08;6!UBERON:0007023;4.91e-07;114|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.05e-22,114;UBERON:0001737,1.35e-10,9;UBERON:0003688,3.19e-08,6;UBERON:0002358,3.19e-08,6;UBERON:0003684,3.19e-08,6;UBERON:0001178,3.19e-08,6;UBERON:0011216,8.07e-08,223;UBERON:0001049,1.07e-07,56;UBERON:0005068,1.07e-07,56;UBERON:0006241,1.07e-07,56;UBERON:0007135,1.07e-07,56;UBERON:0004457,2.61e-07,12;UBERON:0000042,2.61e-07,12;UBERON:0010314,4.68e-07,132;UBERON:0001557,6.05e-07,19|phase1_expression=22.3464406502785,20.1254492457524,15.6459388546528,36.0263874071269,23.241976910219,40.9999106327173,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66221330396589,0,2.00535164254356,0.579386075843295,2.3858578411533,1.94653948121054,0,0.221729397462564,0.175669571386252,2.48860243445654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0.35576626268671,1.33888245105868,0.402829317109147,0.760272105718513,1.95249646038536,0.367663080345869,0,0.267899184852239,0.673588117878509,0.450445921933289,0,0,0,0,0,0,14.9091585508596,2.27934920996244,0.132409180813219,0,0,2.24271040056923,1.06748995729705,0,0,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.89694817844431,1.2813443329114,0.847727604638247,0,0.206105058476878,1.54584324027377,2.60563598864226,3.03797398034279,20.0720230632069,0.504867548488229,1.65689817556139,0.969876340912871,1.06502877754984,3.02256294682921,0.67824236924195,0.193260853163297,0.545492241181669,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,13.605282004582,14.8354527268729,13.2556066435915,16.5440959098591,14.3800433100988,13.7616959084436,12.5393116588953,15.893938675153,10.0034260806062,2.95262181849859,0,0,0,0,0,3.54473944008842,0,0.122988438543114,0,0.219500570817251,0,0,0.648119116109707,0,0,1.44331342025273,0.231860809950154,0.117408694235822,0.721832238805369,0.462985512576611,0.761016608938393,0,0,0,0,0,0.93733833986777,4.87148171776693,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904902010304444,0,0,1.86156681609409,2.08014873822732,0,0,0,0.57191197463259,0.542621605391443,0,0,0.710783897485092,0,0,0.871533458600294,0.299918973546171,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0,0.157702415033935,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0.30239029332968,34.7350930946288,28.3904650582916,23.8561080268113,19.9897072838893,39.4014581781362,13.3508754549194,19.2943486378488,0,0.177561725313127,0,0,0,0,0,0.276242966807689,0.229628896329213,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,1.0795795805107,0,0,0,0,0,0,0,0,0,0,0,11.0253882463063,0.54941678891006,0.990113999047056,0.574265537996172,0.650060246036521,4.82051789532479,0.096670718292122,0,0.307007349452259,0.413509717453592,0,0.145016693914229,0.170453254832202,7.56772302997267,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=22998 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29191 | |||
|TSSclassifier=S | |||
|UniProt=G5EA03 | |||
|association_with_transcript=0bp_to_ENST00000503057,ENST00000511496,uc003gvz.3,uc003gwa.3_5end | |||
|coexpression_cluster_id=C2792 | |||
|description=CAGE_peak_3_at_LIMCH1_5end | |||
|id=chr4:41540160..41540196,+ | |||
|ontology_enrichment_celltype=CL:0000077!2.76e-11!19 | |||
|ontology_enrichment_celltype_v019=CL:0000077;6.18e-13;19!CL:0000136;2.18e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,5.33e-13,19;CL:0000136,1.95e-08,15 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.39e-08;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.38e-27!115;UBERON:0001049!1.45e-13!57;UBERON:0005068!1.45e-13!57;UBERON:0006241!1.45e-13!57;UBERON:0007135!1.45e-13!57;UBERON:0003075!5.52e-11!86;UBERON:0007284!5.52e-11!86;UBERON:0000064!5.74e-11!219;UBERON:0000477!1.03e-10!286;UBERON:0002780!1.90e-10!41;UBERON:0001890!1.90e-10!41;UBERON:0006240!1.90e-10!41;UBERON:0002346!4.07e-10!90;UBERON:0003080!6.29e-10!42;UBERON:0002616!6.93e-10!59;UBERON:0000955!6.95e-10!69;UBERON:0006238!6.95e-10!69;UBERON:0002020!1.52e-09!34;UBERON:0003528!1.52e-09!34;UBERON:0001017!1.80e-09!82;UBERON:0000475!2.98e-09!365;UBERON:0001893!3.88e-09!34;UBERON:0005743!7.17e-09!86;UBERON:0004111!7.46e-09!241;UBERON:0002791!8.02e-09!33;UBERON:0001869!1.71e-08!32;UBERON:0001737!4.24e-08!9;UBERON:0000025!4.41e-08!194;UBERON:0000073!1.17e-07!94;UBERON:0001016!1.17e-07!94;UBERON:0000062!1.36e-07!511;UBERON:0000481!1.84e-07!347;UBERON:0000468!2.63e-07!659;UBERON:0002619!7.83e-07!22;UBERON:0000153!9.69e-07!129;UBERON:0007811!9.69e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.34e-10;9!UBERON:0001557;1.34e-10;9!UBERON:0003688;3.22e-08;6!UBERON:0002358;3.22e-08;6!UBERON:0003684;3.22e-08;6!UBERON:0001178;3.22e-08;6!UBERON:0007023;4.91e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.05e-22,114;UBERON:0001737,1.35e-10,9;UBERON:0003688,3.19e-08,6;UBERON:0002358,3.19e-08,6;UBERON:0003684,3.19e-08,6;UBERON:0001178,3.19e-08,6;UBERON:0011216,8.07e-08,223;UBERON:0001049,1.07e-07,56;UBERON:0005068,1.07e-07,56;UBERON:0006241,1.07e-07,56;UBERON:0007135,1.07e-07,56;UBERON:0004457,2.61e-07,12;UBERON:0000042,2.61e-07,12;UBERON:0010314,4.68e-07,132;UBERON:0001557,6.05e-07,19 | |||
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| |||
|short_description=p3@LIMCH1 | |||
}} |
Revision as of 10:55, 13 September 2013
Short description: | p3@LIMCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LIMCH1_5end |
Coexpression cluster: | C2792_lung_Preadipocyte_Adipocyte_mesothelioma_spleen_mucinous_skeletal |
Association with transcript: | 0bp_to_ENST00000503057, ENST00000511496, uc003gvz.3, uc003gwa.3_5end |
EntrezGene: | LIMCH1 |
HGNC: | 29191 |
UniProt: | G5EA03 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 5.33e-13 | 19 |
fat cell | 1.95e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.05e-22 | 114 |
larynx | 1.35e-10 | 9 |
omentum | 3.19e-08 | 6 |
peritoneum | 3.19e-08 | 6 |
abdominal cavity | 3.19e-08 | 6 |
visceral peritoneum | 3.19e-08 | 6 |
organ system subdivision | 8.07e-08 | 223 |
neural tube | 1.07e-07 | 56 |
neural rod | 1.07e-07 | 56 |
future spinal cord | 1.07e-07 | 56 |
neural keel | 1.07e-07 | 56 |
cavity lining | 2.61e-07 | 12 |
serous membrane | 2.61e-07 | 12 |
structure with developmental contribution from neural crest | 4.68e-07 | 132 |
upper respiratory tract | 6.05e-07 | 19 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.