FFCP PHASE1:Mm9::chr16:28930068..28930094,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=239796|HGNC=|UniProt=D3Z742|association_with_transcript=-284bp_to_ENSMUST00000100023,NM_177718,uc007yvv.1_5end|description=CAGE_peak_4_at_1600021P15Rik_5end|id=chr16:28930068..28930094,-|ontology_enrichment_celltype=CL:0000540!1.76e-09!33;CL:0000047!1.76e-09!33;CL:0000031!1.76e-09!33;CL:0000404!1.76e-09!33;CL:0000221!4.06e-08!44;CL:0000133!4.06e-08!44;CL:0002319!5.96e-08!43;CL:0000117!7.28e-08!23;CL:0000337!7.28e-08!23|ontology_enrichment_celltype_v019_2=CL:0000540,2.31e-09,33;CL:0000047,2.31e-09,33;CL:0000031,2.31e-09,33;CL:0000404,2.31e-09,33;CL:0000221,5.33e-08,44;CL:0000133,5.33e-08,44;CL:0000117,5.76e-08,23;CL:0000337,5.76e-08,23;CL:0002319,8.28e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.18e-18!102;UBERON:0000924!1.18e-18!102;UBERON:0006601!1.18e-18!102;UBERON:0001017!2.61e-18!73;UBERON:0005743!2.61e-18!73;UBERON:0000073!3.99e-17!75;UBERON:0001016!3.99e-17!75;UBERON:0002346!7.53e-17!71;UBERON:0003075!7.53e-17!71;UBERON:0007284!7.53e-17!71;UBERON:0000033!1.03e-15!63;UBERON:0000955!1.03e-14!50;UBERON:0006238!1.03e-14!50;UBERON:0002616!1.65e-14!49;UBERON:0001049!2.39e-14!52;UBERON:0005068!2.39e-14!52;UBERON:0006241!2.39e-14!52;UBERON:0007135!2.39e-14!52;UBERON:0003056!4.25e-13!49;UBERON:0000468!1.35e-12!333;UBERON:0002780!9.07e-12!39;UBERON:0001890!9.07e-12!39;UBERON:0006240!9.07e-12!39;UBERON:0000025!1.42e-11!114;UBERON:0003080!1.64e-11!40;UBERON:0004111!4.99e-11!122;UBERON:0000922!6.15e-11!328;UBERON:0002020!1.18e-08!34;UBERON:0002791!6.43e-07!29;UBERON:0003528!6.43e-07!29;UBERON:0001893!6.43e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.27e-17,73;UBERON:0004121,2.94e-17,95;UBERON:0000924,2.94e-17,95;UBERON:0006601,2.94e-17,95;UBERON:0001016,1.76e-16,75;UBERON:0000073,3.52e-16,54;UBERON:0002346,7.58e-16,64;UBERON:0003075,7.58e-16,64;UBERON:0007284,7.58e-16,64;UBERON:0010314,1.78e-14,92;UBERON:0010371,7.09e-14,73;UBERON:0001049,2.09e-13,52;UBERON:0005068,2.09e-13,52;UBERON:0006241,2.09e-13,52;UBERON:0007135,2.09e-13,52;UBERON:0003056,2.47e-12,49;UBERON:0000955,4.23e-12,47;UBERON:0006238,4.23e-12,47;UBERON:0002616,7.23e-12,46;UBERON:0002780,1.31e-11,39;UBERON:0001890,1.31e-11,39;UBERON:0006240,1.31e-11,39;UBERON:0003080,5.76e-11,40;UBERON:0000025,1.26e-10,114;UBERON:0004111,3.77e-10,122;UBERON:0002020,3.41e-08,34;UBERON:0001894,1.61e-07,10;UBERON:0006222,1.61e-07,10;UBERON:0005423,4.34e-07,304|phase1_expression=0.640595388419176,0,0.909998478779072,0.30246421130683,2.00358291978539,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0.202475267389826,0,0.315462165358238,0,0,0.765389611359628,0,0,0.159992422793407,0,0,0.430761996159075,0,0.190023419456374,0,0,0,0,0,0.577703239502549,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0.782391344348039,2.18025156380447,2.63623419281366,2.3331587888914,0.55994568650145,0,0,0,0,0.257259436035947,0,0,2.02316460859598,3.70293685490423,1.90149421051854,0,0,0.449949858640699,0.988866362566974,0,1.79760066311043,0.384218305321555,1.24427534770173,1.08004750665353,2.10324961351382,2.28520787523043,1.54607978666129,0.367472397644862,0.958454710182364,0.919218786610021,4.40463523997555,7.40586560894089,4.45458946443106,2.50583946687368,4.48289453651807,3.64639359389732,2.23346399201105,2.8138130501584,1.83357897332172,4.41942878210502,1.85083185038834,2.23679334990361,0.075726193333184,0.453429360640713,5.79728977403356,4.30211938490693,0,2.15881276655127,0,0.896053774194671,0.421333260395256,0,0.259786004602869,0,1.54927761754349,2.56652954828636,2.54805239706646,0,0.216491041011214,0.253359865475099,0,0.45673551887624,0.517875767294343,0.148442139064825,0.520455980298408,2.43572382649713,2.53677046981664,1.05505848386836,1.76383060703557,1.0053327306374,1.73036477414062,0.86759614151947,0,1.29413479957927,0.441683036920787,0.484875253135222,0,4.39171195517321,2.30391377494801,0.766371165625774,0,0,0,0.898743836428936,1.37250180845588,2.76439574648302,1.56441888173049,1.53429274398198,5.40248915854856,3.56930778749067,1.2220723662038,1.11966273549084,0.252722758433675,0.631325567659422,1.69156575851515,2.29902104433473,2.88099407688559,2.26057226753573,1.76894897793452,1.66547836370305,1.68663104207512,0.776110112217047,0.646703978798527,1.89106080167819,0.527853372491847,0.43839146485515,0,1.39300866608867,0.61734640922383,0.59710280045548,0,0,0,1.86413195281952,1.40715635988658,0.900310307305074,0.710234206755631,1.77087808572663,0.308534225774757,1.16266972375204,1.87791380979733,0.700592054203017,1.6455984991348,1.31333971263276,1.70244500046297,0.730999937126662,1.09775057645525,2.01309628140558,0.841159794256509,4.21908910755066,1.32167513193519,0.793351699990633,3.83918850963421,2.32236671860439,1.67527699718721,0.403367049246685,1.77902435075896,1.33157938278791,0.949058123089023,1.81168850196412,0.502670417600539,1.39269530428806,1.55971269695296,0.898819408654221,0.432276099749388,0.398282546508734,1.89667900953082,0.79973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| ||
|EntrezGene=239796 | |||
|HGNC= | |||
|UniProt=D3Z742 | |||
|association_with_transcript=-284bp_to_ENSMUST00000100023,NM_177718,uc007yvv.1_5end | |||
|description=CAGE_peak_4_at_1600021P15Rik_5end | |||
|id=chr16:28930068..28930094,- | |||
|ontology_enrichment_celltype=CL:0000540!1.76e-09!33;CL:0000047!1.76e-09!33;CL:0000031!1.76e-09!33;CL:0000404!1.76e-09!33;CL:0000221!4.06e-08!44;CL:0000133!4.06e-08!44;CL:0002319!5.96e-08!43;CL:0000117!7.28e-08!23;CL:0000337!7.28e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.31e-09,33;CL:0000047,2.31e-09,33;CL:0000031,2.31e-09,33;CL:0000404,2.31e-09,33;CL:0000221,5.33e-08,44;CL:0000133,5.33e-08,44;CL:0000117,5.76e-08,23;CL:0000337,5.76e-08,23;CL:0002319,8.28e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.18e-18!102;UBERON:0000924!1.18e-18!102;UBERON:0006601!1.18e-18!102;UBERON:0001017!2.61e-18!73;UBERON:0005743!2.61e-18!73;UBERON:0000073!3.99e-17!75;UBERON:0001016!3.99e-17!75;UBERON:0002346!7.53e-17!71;UBERON:0003075!7.53e-17!71;UBERON:0007284!7.53e-17!71;UBERON:0000033!1.03e-15!63;UBERON:0000955!1.03e-14!50;UBERON:0006238!1.03e-14!50;UBERON:0002616!1.65e-14!49;UBERON:0001049!2.39e-14!52;UBERON:0005068!2.39e-14!52;UBERON:0006241!2.39e-14!52;UBERON:0007135!2.39e-14!52;UBERON:0003056!4.25e-13!49;UBERON:0000468!1.35e-12!333;UBERON:0002780!9.07e-12!39;UBERON:0001890!9.07e-12!39;UBERON:0006240!9.07e-12!39;UBERON:0000025!1.42e-11!114;UBERON:0003080!1.64e-11!40;UBERON:0004111!4.99e-11!122;UBERON:0000922!6.15e-11!328;UBERON:0002020!1.18e-08!34;UBERON:0002791!6.43e-07!29;UBERON:0003528!6.43e-07!29;UBERON:0001893!6.43e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.27e-17,73;UBERON:0004121,2.94e-17,95;UBERON:0000924,2.94e-17,95;UBERON:0006601,2.94e-17,95;UBERON:0001016,1.76e-16,75;UBERON:0000073,3.52e-16,54;UBERON:0002346,7.58e-16,64;UBERON:0003075,7.58e-16,64;UBERON:0007284,7.58e-16,64;UBERON:0010314,1.78e-14,92;UBERON:0010371,7.09e-14,73;UBERON:0001049,2.09e-13,52;UBERON:0005068,2.09e-13,52;UBERON:0006241,2.09e-13,52;UBERON:0007135,2.09e-13,52;UBERON:0003056,2.47e-12,49;UBERON:0000955,4.23e-12,47;UBERON:0006238,4.23e-12,47;UBERON:0002616,7.23e-12,46;UBERON:0002780,1.31e-11,39;UBERON:0001890,1.31e-11,39;UBERON:0006240,1.31e-11,39;UBERON:0003080,5.76e-11,40;UBERON:0000025,1.26e-10,114;UBERON:0004111,3.77e-10,122;UBERON:0002020,3.41e-08,34;UBERON:0001894,1.61e-07,10;UBERON:0006222,1.61e-07,10;UBERON:0005423,4.34e-07,304 | |||
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| |||
|short_description=p4@1600021P15Rik | |||
}} |
Revision as of 12:22, 13 September 2013
Short description: | p4@1600021P15Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_1600021P15Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | -284bp_to_ENSMUST00000100023, NM_177718, uc007yvv.1_5end |
EntrezGene: | 1600021P15Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.31e-09 | 33 |
neuronal stem cell | 2.31e-09 | 33 |
neuroblast | 2.31e-09 | 33 |
electrically signaling cell | 2.31e-09 | 33 |
ectodermal cell | 5.33e-08 | 44 |
neurectodermal cell | 5.33e-08 | 44 |
CNS neuron (sensu Vertebrata) | 5.76e-08 | 23 |
neuroblast (sensu Vertebrata) | 5.76e-08 | 23 |
neural cell | 8.28e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.27e-17 | 73 |
ectoderm-derived structure | 2.94e-17 | 95 |
ectoderm | 2.94e-17 | 95 |
presumptive ectoderm | 2.94e-17 | 95 |
nervous system | 1.76e-16 | 75 |
regional part of nervous system | 3.52e-16 | 54 |
neurectoderm | 7.58e-16 | 64 |
neural plate | 7.58e-16 | 64 |
presumptive neural plate | 7.58e-16 | 64 |
structure with developmental contribution from neural crest | 1.78e-14 | 92 |
ecto-epithelium | 7.09e-14 | 73 |
neural tube | 2.09e-13 | 52 |
neural rod | 2.09e-13 | 52 |
future spinal cord | 2.09e-13 | 52 |
neural keel | 2.09e-13 | 52 |
pre-chordal neural plate | 2.47e-12 | 49 |
brain | 4.23e-12 | 47 |
future brain | 4.23e-12 | 47 |
regional part of brain | 7.23e-12 | 46 |
regional part of forebrain | 1.31e-11 | 39 |
forebrain | 1.31e-11 | 39 |
future forebrain | 1.31e-11 | 39 |
anterior neural tube | 5.76e-11 | 40 |
tube | 1.26e-10 | 114 |
anatomical conduit | 3.77e-10 | 122 |
gray matter | 3.41e-08 | 34 |
diencephalon | 1.61e-07 | 10 |
future diencephalon | 1.61e-07 | 10 |
developing anatomical structure | 4.34e-07 | 304 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.