FFCP PHASE1:Hg19::chr5:149535244..149535282,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5159|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8804|TSSclassifier=S|UniProt=E5RJ14|association_with_transcript=-54bp_to_ENST00000517488_5end|coexpression_cluster_id=C1528|description=CAGE_peak_4_at_PDGFRB_5end|id=chr5:149535244..149535282,-|ontology_enrichment_celltype=CL:0000055!1.73e-28!180;CL:0000057!3.06e-23!75;CL:0002620!6.57e-09!23;CL:0000183!2.41e-08!59;CL:0000136!4.19e-08!15;CL:0000680!8.20e-08!57;CL:0000056!8.20e-08!57;CL:0000355!8.20e-08!57;CL:0000187!9.99e-08!54;CL:0002334!2.67e-07!12|ontology_enrichment_celltype_v019=CL:0000057;6.47e-10;73!CL:0002620;1.09e-09;23!CL:0002334;6.14e-08;12!CL:0000136;1.93e-07;13!CL:0002320;3.20e-07;188|ontology_enrichment_celltype_v019_2=CL:0000057,2.53e-25,76;CL:0002620,1.18e-09,23;CL:0000136,9.05e-09,15;CL:0002334,6.94e-08,12|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!1.02e-18!365;UBERON:0007023!5.21e-13!115;UBERON:0000914!2.23e-12!83;UBERON:0002329!2.23e-12!83;UBERON:0003077!2.23e-12!83;UBERON:0003059!2.23e-12!83;UBERON:0007282!2.23e-12!83;UBERON:0009618!2.23e-12!83;UBERON:0007285!2.23e-12!83;UBERON:0000481!1.10e-11!347;UBERON:0004290!7.10e-11!70;UBERON:0003102!1.35e-09!95;UBERON:0002385!1.60e-09!63;UBERON:0001015!1.60e-09!63;UBERON:0000383!1.60e-09!63;UBERON:0001134!5.48e-09!61;UBERON:0002036!5.48e-09!61;UBERON:0003082!5.48e-09!61;UBERON:0005256!1.12e-08!143;UBERON:0001013!3.06e-08!14;UBERON:0000468!3.93e-08!659;UBERON:0000486!5.75e-08!82;UBERON:0002199!8.67e-08!45;UBERON:0002416!8.67e-08!45;UBERON:0007100!1.76e-07!27;UBERON:0000153!2.58e-07!129;UBERON:0007811!2.58e-07!129;UBERON:0000033!3.55e-07!123;UBERON:0000479!4.27e-07!787;UBERON:0002100!5.04e-07!216|ontology_enrichment_uberon_v019=UBERON:0001013;5.95e-09;14!UBERON:0002384;4.24e-08;198!UBERON:0007100;3.04e-07;25!UBERON:0004457;9.85e-07;9!UBERON:0000042;9.85e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.65e-12,114;UBERON:0000479,5.28e-10,773;UBERON:0003102,1.43e-09,99;UBERON:0010314,4.78e-09,132;UBERON:0001013,6.42e-09,14;UBERON:0002199,7.58e-09,46;UBERON:0002416,7.58e-09,46;UBERON:0007524,7.84e-09,73;UBERON:0002329,9.96e-09,71;UBERON:0003059,9.96e-09,71;UBERON:0007282,9.96e-09,71;UBERON:0004290,9.96e-09,71;UBERON:0009618,9.96e-09,71;UBERON:0003104,1.81e-08,160;UBERON:0009142,1.81e-08,160;UBERON:0003077,2.14e-08,72;UBERON:0007285,2.14e-08,72;UBERON:0007503,3.73e-08,78;UBERON:0002385,2.31e-07,64;UBERON:0001015,2.31e-07,64;UBERON:0000383,2.31e-07,64;UBERON:0007100,3.12e-07,27;UBERON:0002097,6.32e-07,41;UBERON:0001134,7.62e-07,62;UBERON:0002036,7.62e-07,62;UBERON:0003082,7.62e-07,62;UBERON:0005256,9.99e-07,122|phase1_expression=29.6135758211007,26.7625654863729,58.637032103924,39.0285863577209,53.1883702368472,28.7871712953122,5.06599756336621,29.0591141776342,56.9384669475648,0,0.697801167972428,0,0,8.53987835424322,20.5466372951308,0.672325146451775,0.602694528023977,0.730310090387373,1.95173119516203,2.46242116153576,5.71201935483908,3.44800193625897,0.85870796139317,0.273748850145768,0.753255837568817,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63239701580021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,90.2085405361658,8.04841031644363,5.88167784480239,7.95166135246046,27.072247174338,17.3815822752988,11.1340032587154,13.1391414981712,2.07976597760949,4.21285855178871,3.07421749925941,5.89405839739707,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,28.8243731983285,4.81195944325403,3.44263870114369,37.001924076597,10.2853830837524,1.68203280042692,3.20246987189115,2.71334303258876,14.0044965929895,2.96363478553314,1.63461903113459,21.4927547255803,31.1134999219199,8.43557154601668,8.11616199758833,1.1409436430889,11.9558944441441,1.29177948508141,1.94247533241758,1.40450806702248,9.59524604897998,3.31652656741774,14.5689351457829,15.4440371446667,16.3196173323848,10.9219363432563,14.3723628363248,2.86171393721913,3.62843707628696,5.54128230968366,10.0964852802593,7.66219489497549,17.4276148331652,0.567160915800105,8.79009214875424,9.61008249683553,11.6562545637759,26.4080164554274,6.80146692973697,17.2619161830572,14.1448810812008,14.8523172372314,11.9847516348274,11.3595198409852,13.0710856072065,43.806081397898,28.7557769938458,5.84362169720314,7.12154487704048,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,15.6449532329816,8.36213219650751,12.4321429217232,38.5425380266543,45.4784073451839,0,0,0,0,0,0,0,0,0,0,2.80483547606892,21.8134226005642,32.3419165048192,0,0,0.590789906681404,0,0,0.857839051492628,0,0,0,0,5.86454949558584,9.35941306751621,0,0.231860809950154,4.46153038096122,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0.207328115540772,0.144119953416961,0.378727300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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5159 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8804 | |||
|TSSclassifier=S | |||
|UniProt=E5RJ14 | |||
|association_with_transcript=-54bp_to_ENST00000517488_5end | |||
|coexpression_cluster_id=C1528 | |||
|description=CAGE_peak_4_at_PDGFRB_5end | |||
|id=chr5:149535244..149535282,- | |||
|ontology_enrichment_celltype=CL:0000055!1.73e-28!180;CL:0000057!3.06e-23!75;CL:0002620!6.57e-09!23;CL:0000183!2.41e-08!59;CL:0000136!4.19e-08!15;CL:0000680!8.20e-08!57;CL:0000056!8.20e-08!57;CL:0000355!8.20e-08!57;CL:0000187!9.99e-08!54;CL:0002334!2.67e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000057;6.47e-10;73!CL:0002620;1.09e-09;23!CL:0002334;6.14e-08;12!CL:0000136;1.93e-07;13!CL:0002320;3.20e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.53e-25,76;CL:0002620,1.18e-09,23;CL:0000136,9.05e-09,15;CL:0002334,6.94e-08,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.02e-18!365;UBERON:0007023!5.21e-13!115;UBERON:0000914!2.23e-12!83;UBERON:0002329!2.23e-12!83;UBERON:0003077!2.23e-12!83;UBERON:0003059!2.23e-12!83;UBERON:0007282!2.23e-12!83;UBERON:0009618!2.23e-12!83;UBERON:0007285!2.23e-12!83;UBERON:0000481!1.10e-11!347;UBERON:0004290!7.10e-11!70;UBERON:0003102!1.35e-09!95;UBERON:0002385!1.60e-09!63;UBERON:0001015!1.60e-09!63;UBERON:0000383!1.60e-09!63;UBERON:0001134!5.48e-09!61;UBERON:0002036!5.48e-09!61;UBERON:0003082!5.48e-09!61;UBERON:0005256!1.12e-08!143;UBERON:0001013!3.06e-08!14;UBERON:0000468!3.93e-08!659;UBERON:0000486!5.75e-08!82;UBERON:0002199!8.67e-08!45;UBERON:0002416!8.67e-08!45;UBERON:0007100!1.76e-07!27;UBERON:0000153!2.58e-07!129;UBERON:0007811!2.58e-07!129;UBERON:0000033!3.55e-07!123;UBERON:0000479!4.27e-07!787;UBERON:0002100!5.04e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;5.95e-09;14!UBERON:0002384;4.24e-08;198!UBERON:0007100;3.04e-07;25!UBERON:0004457;9.85e-07;9!UBERON:0000042;9.85e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.65e-12,114;UBERON:0000479,5.28e-10,773;UBERON:0003102,1.43e-09,99;UBERON:0010314,4.78e-09,132;UBERON:0001013,6.42e-09,14;UBERON:0002199,7.58e-09,46;UBERON:0002416,7.58e-09,46;UBERON:0007524,7.84e-09,73;UBERON:0002329,9.96e-09,71;UBERON:0003059,9.96e-09,71;UBERON:0007282,9.96e-09,71;UBERON:0004290,9.96e-09,71;UBERON:0009618,9.96e-09,71;UBERON:0003104,1.81e-08,160;UBERON:0009142,1.81e-08,160;UBERON:0003077,2.14e-08,72;UBERON:0007285,2.14e-08,72;UBERON:0007503,3.73e-08,78;UBERON:0002385,2.31e-07,64;UBERON:0001015,2.31e-07,64;UBERON:0000383,2.31e-07,64;UBERON:0007100,3.12e-07,27;UBERON:0002097,6.32e-07,41;UBERON:0001134,7.62e-07,62;UBERON:0002036,7.62e-07,62;UBERON:0003082,7.62e-07,62;UBERON:0005256,9.99e-07,122 | |||
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| |||
|short_description=p4@PDGFRB | |||
}} |
Revision as of 14:01, 13 September 2013
Short description: | p4@PDGFRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PDGFRB_5end |
Coexpression cluster: | C1528_Mesenchymal_Pericytes_mesodermal_Adipocyte_Fibroblast_Multipotent_Hair |
Association with transcript: | -54bp_to_ENST00000517488_5end |
EntrezGene: | PDGFRB |
HGNC: | 8804 |
UniProt: | E5RJ14 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.53e-25 | 76 |
skin fibroblast | 1.18e-09 | 23 |
fat cell | 9.05e-09 | 15 |
preadipocyte | 6.94e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.65e-12 | 114 |
tissue | 5.28e-10 | 773 |
surface structure | 1.43e-09 | 99 |
structure with developmental contribution from neural crest | 4.78e-09 | 132 |
adipose tissue | 6.42e-09 | 14 |
integument | 7.58e-09 | 46 |
integumental system | 7.58e-09 | 46 |
dense mesenchyme tissue | 7.84e-09 | 73 |
somite | 9.96e-09 | 71 |
presomitic mesoderm | 9.96e-09 | 71 |
presumptive segmental plate | 9.96e-09 | 71 |
dermomyotome | 9.96e-09 | 71 |
trunk paraxial mesoderm | 9.96e-09 | 71 |
mesenchyme | 1.81e-08 | 160 |
entire embryonic mesenchyme | 1.81e-08 | 160 |
paraxial mesoderm | 2.14e-08 | 72 |
presumptive paraxial mesoderm | 2.14e-08 | 72 |
epithelial vesicle | 3.73e-08 | 78 |
muscle tissue | 2.31e-07 | 64 |
musculature | 2.31e-07 | 64 |
musculature of body | 2.31e-07 | 64 |
primary circulatory organ | 3.12e-07 | 27 |
skin of body | 6.32e-07 | 41 |
skeletal muscle tissue | 7.62e-07 | 62 |
striated muscle tissue | 7.62e-07 | 62 |
myotome | 7.62e-07 | 62 |
trunk mesenchyme | 9.99e-07 | 122 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.