FFCP PHASE1:Hg19::chr5:153855055..153855066,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C360|description=CAGE_peak_at_chr5:153855055..153855066,-|id=chr5:153855055..153855066,-|ontology_enrichment_celltype=CL:0000349!2.49e-23!3;CL:0002577!2.49e-23!3;CL:0002536!9.32e-16!2;CL:0002537!6.93e-14!5;CL:0002322!4.01e-13!5|ontology_enrichment_celltype_v019=CL:0002577;2.63e-85;3!CL:0000349;2.06e-37;19!CL:0002536;2.55e-15;2!CL:0002537;6.04e-07;5!CL:0000333;6.58e-07;5|ontology_enrichment_celltype_v019_2=CL:0002577,3.04e-85,3;CL:0000349,2.23e-37,19;CL:0002536,2.74e-15,2;CL:0002537,6.04e-07,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:114!2.41e-15!2;DOID:178!1.98e-08!1;DOID:326!1.98e-08!1;DOID:3978!1.98e-08!1;DOID:3394!1.98e-08!1;DOID:5844!1.98e-08!1;DOID:1287!4.08e-08!4;DOID:3095!4.66e-08!22;DOID:2994!4.66e-08!22|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005631!7.40e-33!14;UBERON:0000158!7.40e-33!14;UBERON:0000305!3.38e-26!7;UBERON:0004871!6.52e-23!8;UBERON:0000478!1.03e-18!24;UBERON:0001987!1.20e-17!4;UBERON:0004340!1.20e-17!4;UBERON:0002110!2.06e-10!3;UBERON:0006242!2.06e-10!3;UBERON:0003124!2.64e-10!7;UBERON:0004923!4.47e-09!57;UBERON:0000013!8.65e-07!5;UBERON:0002410!8.65e-07!5|ontology_enrichment_uberon_v019=UBERON:0001987;2.90e-64;4!UBERON:0000478;9.72e-30;24!UBERON:0000305;4.93e-17;7!UBERON:0005631;3.06e-12;10!UBERON:0000158;3.06e-12;10!UBERON:0000077;3.11e-10;27!UBERON:0000013;6.58e-07;5!UBERON:0002410;6.58e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001987,3.24e-64,4;UBERON:0004340,3.24e-64,4;UBERON:0005631,1.69e-50,14;UBERON:0000158,1.69e-50,14;UBERON:0003124,3.85e-37,7;UBERON:0000478,1.03e-29,24;UBERON:0000305,5.13e-17,7;UBERON:0004871,5.04e-15,8;UBERON:0000995,6.06e-13,21;UBERON:0005795,2.17e-12,22;UBERON:0003975,2.17e-12,22;UBERON:0004923,4.50e-11,66;UBERON:0004175,5.46e-11,25;UBERON:0000077,1.44e-09,29;UBERON:0003134,1.22e-07,37;UBERON:0000474,1.22e-07,37;UBERON:0003100,5.90e-07,41;UBERON:0000013,6.39e-07,5;UBERON:0002410,6.39e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.09220686065086,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.24378600024763,3.32870879020994,4.23346410661552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,2.37571744666111,0.921482106297696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383683113910955,0,0,1.63814457288021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0.218531143927391,3.4208595273088,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr5:153855055..153855066,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C360 | |||
|description=CAGE_peak_at_chr5:153855055..153855066,- | |||
|id=chr5:153855055..153855066,- | |||
|ontology_enrichment_celltype=CL:0000349!2.49e-23!3;CL:0002577!2.49e-23!3;CL:0002536!9.32e-16!2;CL:0002537!6.93e-14!5;CL:0002322!4.01e-13!5 | |||
|ontology_enrichment_celltype_v019=CL:0002577;2.63e-85;3!CL:0000349;2.06e-37;19!CL:0002536;2.55e-15;2!CL:0002537;6.04e-07;5!CL:0000333;6.58e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,3.04e-85,3;CL:0000349,2.23e-37,19;CL:0002536,2.74e-15,2;CL:0002537,6.04e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:114!2.41e-15!2;DOID:178!1.98e-08!1;DOID:326!1.98e-08!1;DOID:3978!1.98e-08!1;DOID:3394!1.98e-08!1;DOID:5844!1.98e-08!1;DOID:1287!4.08e-08!4;DOID:3095!4.66e-08!22;DOID:2994!4.66e-08!22 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.40e-33!14;UBERON:0000158!7.40e-33!14;UBERON:0000305!3.38e-26!7;UBERON:0004871!6.52e-23!8;UBERON:0000478!1.03e-18!24;UBERON:0001987!1.20e-17!4;UBERON:0004340!1.20e-17!4;UBERON:0002110!2.06e-10!3;UBERON:0006242!2.06e-10!3;UBERON:0003124!2.64e-10!7;UBERON:0004923!4.47e-09!57;UBERON:0000013!8.65e-07!5;UBERON:0002410!8.65e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;2.90e-64;4!UBERON:0000478;9.72e-30;24!UBERON:0000305;4.93e-17;7!UBERON:0005631;3.06e-12;10!UBERON:0000158;3.06e-12;10!UBERON:0000077;3.11e-10;27!UBERON:0000013;6.58e-07;5!UBERON:0002410;6.58e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001987,3.24e-64,4;UBERON:0004340,3.24e-64,4;UBERON:0005631,1.69e-50,14;UBERON:0000158,1.69e-50,14;UBERON:0003124,3.85e-37,7;UBERON:0000478,1.03e-29,24;UBERON:0000305,5.13e-17,7;UBERON:0004871,5.04e-15,8;UBERON:0000995,6.06e-13,21;UBERON:0005795,2.17e-12,22;UBERON:0003975,2.17e-12,22;UBERON:0004923,4.50e-11,66;UBERON:0004175,5.46e-11,25;UBERON:0000077,1.44e-09,29;UBERON:0003134,1.22e-07,37;UBERON:0000474,1.22e-07,37;UBERON:0003100,5.90e-07,41;UBERON:0000013,6.39e-07,5;UBERON:0002410,6.39e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.09220686065086,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.24378600024763,3.32870879020994,4.23346410661552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,2.37571744666111,0.921482106297696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383683113910955,0,0,1.63814457288021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0.218531143927391,3.4208595273088,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr5:153855055..153855066,- | |||
}} |
Revision as of 14:21, 13 September 2013
Short description: | p@chr5:153855055..153855066, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:153855055..153855066, - |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 3.04e-85 | 3 |
extraembryonic cell | 2.23e-37 | 19 |
amniotic epithelial cell | 2.74e-15 | 2 |
amnion mesenchymal stem cell | 6.04e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
placenta | 3.24e-64 | 4 |
allantois | 3.24e-64 | 4 |
extraembryonic membrane | 1.69e-50 | 14 |
membranous layer | 1.69e-50 | 14 |
chorion | 3.85e-37 | 7 |
extraembryonic structure | 1.03e-29 | 24 |
amnion | 5.13e-17 | 7 |
somatic layer of lateral plate mesoderm | 5.04e-15 | 8 |
uterus | 6.06e-13 | 21 |
embryonic uterus | 2.17e-12 | 22 |
internal female genitalia | 2.17e-12 | 22 |
organ component layer | 4.50e-11 | 66 |
internal genitalia | 5.46e-11 | 25 |
mixed endoderm/mesoderm-derived structure | 1.44e-09 | 29 |
female reproductive organ | 1.22e-07 | 37 |
female reproductive system | 1.22e-07 | 37 |
female organism | 5.90e-07 | 41 |
sympathetic nervous system | 6.39e-07 | 5 |
autonomic nervous system | 6.39e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.