FFCP PHASE1:Mm9::chr18:46358464..46358478,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=28105|HGNC=|MCL_coexpression_id=0|UniProt=E9Q3A0,Q80WG7|association_with_transcript=0bp_to_ENSMUST00000167364,NM_001170855,uc012bcp.1_5end|description=CAGE_peak_1_at_Trim36_5end|id=chr18:46358464..46358478,-|ontology_enrichment_celltype=CL:0000117!4.22e-10!23;CL:0000337!4.22e-10!23;CL:0000540!6.09e-07!33;CL:0000047!6.09e-07!33;CL:0000031!6.09e-07!33;CL:0000404!6.09e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.09e-10,23;CL:0000337,1.09e-10,23;CL:0000540,1.16e-07,33;CL:0000047,1.16e-07,33;CL:0000031,1.16e-07,33;CL:0000404,1.16e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!8.82e-08!15;UBERON:0001242!1.06e-07!13;UBERON:0000060!1.06e-07!13;UBERON:0001262!1.06e-07!13;UBERON:0004786!1.06e-07!13;UBERON:0000033!1.40e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.92e-09,31;UBERON:0002346,2.06e-08,64;UBERON:0003075,2.06e-08,64;UBERON:0007284,2.06e-08,64;UBERON:0000344,3.27e-08,15;UBERON:0001242,3.99e-08,13;UBERON:0001262,3.99e-08,13;UBERON:0004786,3.99e-08,13;UBERON:0010371,9.96e-08,73;UBERON:0000073,1.14e-07,54;UBERON:0004121,1.20e-07,95;UBERON:0000924,1.20e-07,95;UBERON:0006601,1.20e-07,95;UBERON:0001049,5.20e-07,52;UBERON:0005068,5.20e-07,52;UBERON:0006241,5.20e-07,52;UBERON:0007135,5.20e-07,52;UBERON:0001016,6.59e-07,75;UBERON:0000485,6.88e-07,11|phase1_expression=3.84357233051505,9.07336059862339,7.73498706962211,18.1478526784098,13.5241847085514,5.87577451691614,4.90586545250604,0,6.05391505252167,0.70219357896598,0,0,0.342401459862411,0.0874204024189974,0.666219523631325,0.404950534779652,0.699561878128147,4.25873923233621,3.29074640653773,2.54633791078818,76.5389611359628,1.39007331681239,1.04479915655574,2.55987876469451,2.52350209173887,11.4846392823004,5.1691439539089,4.30942465371778,4.56056206695297,8.82105454159758,2.66076612786366,0,0,0,4.33277429626912,4.98703936075477,8.37094360675713,0,2.3440060335714,1.0470474879476,0.588231488031014,0.683045484958446,0.485510353031154,0,0.101376931219515,0,0,0.218025156380447,0.219686182734472,0,0.979904951377538,0,1.67782606057736,2.17608642603403,0.672187598284928,0,0,0,3.43937983461316,3.70293685490423,5.07065122804943,1.69422266034566,0,2.2497492932035,0.988866362566974,0,0,0,4.87341177849845,3.10513658162888,3.78584930432488,9.71213346972932,5.07997644188711,4.40966877173835,3.64212789869298,3.67687514644008,5.50579404996943,6.63974158042976,4.91540906419979,3.69281605644543,3.11057988248193,3.12548022334056,7.2587579740359,5.6276261003168,7.48711414106369,5.59794312399969,8.11518580554887,5.77838282058432,1.81742863999642,3.24957708459178,2.89864488701678,0.860423876981386,0,0,0,0.448026887097336,7.72444310724635,0,0.259786004602869,0,3.38024207464033,1.28326477414318,0,0,0.649473123033642,0.253359865475099,0,10.8474685733107,3.6251303710604,1.03909497345377,1.73485326766136,1.82679286987285,0.230615497256059,0.753613202763113,1.29347577849275,0.251333182659351,0.247194967734374,1.15679485535929,2.65383165584962,0.485300549842228,1.54589062922275,1.45462575940567,7.45567044872489,1.46390398505774,2.51336048176146,9.70736809792647,5.99075622529601,4.19931911695385,4.95573885584952,4.19413790333504,3.20250421973039,1.38219787324151,2.60736480288415,1.53429274398198,7.2725815595846,4.70499662896497,0.407357455401265,4.97627882440372,18.1960386072246,9.46988351489133,0.650602214813519,3.44853156650209,4.14142898552303,2.71268672104287,2.10913147369116,1.5373646434182,1.87403449119458,8.2785078636485,0.646703978798527,1.51284864134255,0.351902248327898,0.657587197282725,0.556094498451196,0.348252166522167,0.411564272815887,0.199034266818493,0,0.51469581422943,3.6941254921427,0.207125772535502,0,0.36012412292203,0.23674473558521,0.393528463494808,0.462801338662135,0.232533944750408,0,0.583826711835847,0.329119699826961,0.656669856316381,1.21603214318784,0.584799949701329,1.53685080703735,0.939444931322602,3.15434922846191,2.77842453424068,17.1817767151575,4.23120906661671,1.2797295032114,1.39342003116263,1.28867461322093,2.42020229548011,0.889512175379481,0.951128130562796,13.2868137232463,1.31759163779209,2.26201687920243,0.596869416123452,3.11942539390592,12.5834717211591,9.07779809473716,8.96135729644652,1.32767530667157,0.685491075658373,0,0.814605311381257,1.16371492300575,1.33258057791605,1.89709611372772,0.885660887877613,1.255989822731,1.1105744752962,0,0.333690211432188,0.393117990226406,0.449724224769707,0.608580364165509,0.72353147925725,0.50925170356284,0.287696137450811,1.13494658742525,0.274561413188081,1.43768206527355,0.744281895337007,0.936113019343682,0.757736633841335,0,0,1.84753190166605,1.13694847062291,1.14075483509418,1.35796068620151,1.64283173801951,1.34005005953453,1.42826184531608,2.73187107000918,3.62560831444239,3.32197034473162,5.26200736569707,3.27726629431476,2.76295970985433,1.73578870297814,4.52373851817817,0.54390568381871,0.983528546038072,1.10374698521893,11.559642479121,14.5342491374332,0.491804836130026,0.757412781613119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| ||
|EntrezGene=28105 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=E9Q3A0,Q80WG7 | |||
|association_with_transcript=0bp_to_ENSMUST00000167364,NM_001170855,uc012bcp.1_5end | |||
|description=CAGE_peak_1_at_Trim36_5end | |||
|id=chr18:46358464..46358478,- | |||
|ontology_enrichment_celltype=CL:0000117!4.22e-10!23;CL:0000337!4.22e-10!23;CL:0000540!6.09e-07!33;CL:0000047!6.09e-07!33;CL:0000031!6.09e-07!33;CL:0000404!6.09e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.09e-10,23;CL:0000337,1.09e-10,23;CL:0000540,1.16e-07,33;CL:0000047,1.16e-07,33;CL:0000031,1.16e-07,33;CL:0000404,1.16e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!8.82e-08!15;UBERON:0001242!1.06e-07!13;UBERON:0000060!1.06e-07!13;UBERON:0001262!1.06e-07!13;UBERON:0004786!1.06e-07!13;UBERON:0000033!1.40e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.92e-09,31;UBERON:0002346,2.06e-08,64;UBERON:0003075,2.06e-08,64;UBERON:0007284,2.06e-08,64;UBERON:0000344,3.27e-08,15;UBERON:0001242,3.99e-08,13;UBERON:0001262,3.99e-08,13;UBERON:0004786,3.99e-08,13;UBERON:0010371,9.96e-08,73;UBERON:0000073,1.14e-07,54;UBERON:0004121,1.20e-07,95;UBERON:0000924,1.20e-07,95;UBERON:0006601,1.20e-07,95;UBERON:0001049,5.20e-07,52;UBERON:0005068,5.20e-07,52;UBERON:0006241,5.20e-07,52;UBERON:0007135,5.20e-07,52;UBERON:0001016,6.59e-07,75;UBERON:0000485,6.88e-07,11 | |||
|phase1_expression=3.84357233051505,9.07336059862339,7.73498706962211,18.1478526784098,13.5241847085514,5.87577451691614,4.90586545250604,0,6.05391505252167,0.70219357896598,0,0,0.342401459862411,0.0874204024189974,0.666219523631325,0.404950534779652,0.699561878128147,4.25873923233621,3.29074640653773,2.54633791078818,76.5389611359628,1.39007331681239,1.04479915655574,2.55987876469451,2.52350209173887,11.4846392823004,5.1691439539089,4.30942465371778,4.56056206695297,8.82105454159758,2.66076612786366,0,0,0,4.33277429626912,4.98703936075477,8.37094360675713,0,2.3440060335714,1.0470474879476,0.588231488031014,0.683045484958446,0.485510353031154,0,0.101376931219515,0,0,0.218025156380447,0.219686182734472,0,0.979904951377538,0,1.67782606057736,2.17608642603403,0.672187598284928,0,0,0,3.43937983461316,3.70293685490423,5.07065122804943,1.69422266034566,0,2.2497492932035,0.988866362566974,0,0,0,4.87341177849845,3.10513658162888,3.78584930432488,9.71213346972932,5.07997644188711,4.40966877173835,3.64212789869298,3.67687514644008,5.50579404996943,6.63974158042976,4.91540906419979,3.69281605644543,3.11057988248193,3.12548022334056,7.2587579740359,5.6276261003168,7.48711414106369,5.59794312399969,8.11518580554887,5.77838282058432,1.81742863999642,3.24957708459178,2.89864488701678,0.860423876981386,0,0,0,0.448026887097336,7.72444310724635,0,0.259786004602869,0,3.38024207464033,1.28326477414318,0,0,0.649473123033642,0.253359865475099,0,10.8474685733107,3.6251303710604,1.03909497345377,1.73485326766136,1.82679286987285,0.230615497256059,0.753613202763113,1.29347577849275,0.251333182659351,0.247194967734374,1.15679485535929,2.65383165584962,0.485300549842228,1.54589062922275,1.45462575940567,7.45567044872489,1.46390398505774,2.51336048176146,9.70736809792647,5.99075622529601,4.19931911695385,4.95573885584952,4.19413790333504,3.20250421973039,1.38219787324151,2.60736480288415,1.53429274398198,7.2725815595846,4.70499662896497,0.407357455401265,4.97627882440372,18.1960386072246,9.46988351489133,0.650602214813519,3.44853156650209,4.14142898552303,2.71268672104287,2.10913147369116,1.5373646434182,1.87403449119458,8.2785078636485,0.646703978798527,1.51284864134255,0.351902248327898,0.657587197282725,0.556094498451196,0.348252166522167,0.411564272815887,0.199034266818493,0,0.51469581422943,3.6941254921427,0.207125772535502,0,0.36012412292203,0.23674473558521,0.393528463494808,0.462801338662135,0.232533944750408,0,0.583826711835847,0.329119699826961,0.656669856316381,1.21603214318784,0.584799949701329,1.53685080703735,0.939444931322602,3.15434922846191,2.77842453424068,17.1817767151575,4.23120906661671,1.2797295032114,1.39342003116263,1.28867461322093,2.42020229548011,0.889512175379481,0.951128130562796,13.2868137232463,1.31759163779209,2.26201687920243,0.596869416123452,3.11942539390592,12.5834717211591,9.07779809473716,8.96135729644652,1.32767530667157,0.685491075658373,0,0.814605311381257,1.16371492300575,1.33258057791605,1.89709611372772,0.885660887877613,1.255989822731,1.1105744752962,0,0.333690211432188,0.393117990226406,0.449724224769707,0.608580364165509,0.72353147925725,0.50925170356284,0.287696137450811,1.13494658742525,0.274561413188081,1.43768206527355,0.744281895337007,0.936113019343682,0.757736633841335,0,0,1.84753190166605,1.13694847062291,1.14075483509418,1.35796068620151,1.64283173801951,1.34005005953453,1.42826184531608,2.73187107000918,3.62560831444239,3.32197034473162,5.26200736569707,3.27726629431476,2.76295970985433,1.73578870297814,4.52373851817817,0.54390568381871,0.983528546038072,1.10374698521893,11.559642479121,14.5342491374332,0.491804836130026,0.757412781613119,1.89304931649754,1.95219372148319,1.07711698866399,0,0,0.566153061577665,1.21443210502468,1.75353514746787,1.18586333383957,3.53453448063988,1.13552068166615,0.890328018336276,0.488660878060728,1.31976098378028,2.65490276679926,0.242780636154981,0.302323556964751,0.188605079755898,0,0.614870295887855,1.29214146584111,0.727067458955011,0.356497378384721,0.948110273807448,0,0,0.340439605753788,2.34079422240703,0.905510786479282,1.50035924522115,0.532020700926821,2.31879462882692,1.31639216481697,2.43571959291679,3.75474732901937,2.96564899209348,3.74898276693435,2.30840754118072,1.61464426695906,1.5078231232039,0.835606408021955,0.984845398470368,5.82961673259701,15.9465759729038,1.19609616558497,1.03193433981611,0.555583582109135,0.188368457004691,1.36694227721025,1.60144721244566,3.56954702987096,4.19854356970974,4.42239916174156,0.954670618015114,0.632671987162271,0.203319467126849,0.756037385752609,0.418176592028937,0.655087691238533,0.944050424693745,1.1571483801547,1.30877970992015,20.4791657801033,6.21339313086926,536.071984688665,0,0,0.583353565032143,0.774958940866387,1.01373675294467,0.704143431874524,0.39061315453185,1.78260885523708,2.65742532908607,191.827984167738,0,0.810900861160657,0.410843828659309,0.51968329191118,0.537080087002444,0.79472541912506,0.120195449519969,0.295379054349154,0.403865799792591,0.304827226619999,0.6049571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| |||
|short_description=p1@Trim36 | |||
}} | |||
Revision as of 16:16, 13 September 2013
| Short description: | p1@Trim36 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Trim36_5end |
| Coexpression cluster: | MCL_coexpression_mm9:0 |
| Association with transcript: | 0bp_to_ENSMUST00000167364, NM_001170855, uc012bcp.1_5end |
| EntrezGene: | Trim36 |
| Link to Zenbu: | ZENBU |
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CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 1.09e-10 | 23 |
| neuroblast (sensu Vertebrata) | 1.09e-10 | 23 |
| neuron | 1.16e-07 | 33 |
| neuronal stem cell | 1.16e-07 | 33 |
| neuroblast | 1.16e-07 | 33 |
| electrically signaling cell | 1.16e-07 | 33 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 4.92e-09 | 31 |
| neurectoderm | 2.06e-08 | 64 |
| neural plate | 2.06e-08 | 64 |
| presumptive neural plate | 2.06e-08 | 64 |
| mucosa | 3.27e-08 | 15 |
| intestinal mucosa | 3.99e-08 | 13 |
| wall of intestine | 3.99e-08 | 13 |
| gastrointestinal system mucosa | 3.99e-08 | 13 |
| ecto-epithelium | 9.96e-08 | 73 |
| regional part of nervous system | 1.14e-07 | 54 |
| ectoderm-derived structure | 1.20e-07 | 95 |
| ectoderm | 1.20e-07 | 95 |
| presumptive ectoderm | 1.20e-07 | 95 |
| neural tube | 5.20e-07 | 52 |
| neural rod | 5.20e-07 | 52 |
| future spinal cord | 5.20e-07 | 52 |
| neural keel | 5.20e-07 | 52 |
| nervous system | 6.59e-07 | 75 |
| simple columnar epithelium | 6.88e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
