FFCP PHASE1:Hg19::chr6:129204337..129204348,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3908|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6482|TSSclassifier=S|UniProt=P24043|association_with_transcript=0bp_to_ENST00000421865_5end|coexpression_cluster_id=C4556|description=CAGE_peak_5_at_LAMA2_5end|id=chr6:129204337..129204348,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002615;5.45e-08;3|ontology_enrichment_celltype_v019_2=CL:0002615,1.04e-07,3|ontology_enrichment_development_v019=UBERON:0004872;4.70e-08;7!UBERON:0006603;8.05e-08;65|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.03e-39!115;UBERON:0000475!9.40e-16!365;UBERON:0002616!4.62e-12!59;UBERON:0005743!1.87e-11!86;UBERON:0000481!2.68e-11!347;UBERON:0007100!4.02e-11!27;UBERON:0001049!5.08e-11!57;UBERON:0005068!5.08e-11!57;UBERON:0006241!5.08e-11!57;UBERON:0007135!5.08e-11!57;UBERON:0000955!7.32e-11!69;UBERON:0006238!7.32e-11!69;UBERON:0000468!8.93e-11!659;UBERON:0001017!1.26e-10!82;UBERON:0000073!2.96e-10!94;UBERON:0001016!2.96e-10!94;UBERON:0003075!4.93e-10!86;UBERON:0007284!4.93e-10!86;UBERON:0002385!1.67e-09!63;UBERON:0001015!1.67e-09!63;UBERON:0000383!1.67e-09!63;UBERON:0000477!2.33e-09!286;UBERON:0000119!4.19e-09!312;UBERON:0000153!4.57e-09!129;UBERON:0007811!4.57e-09!129;UBERON:0002346!5.40e-09!90;UBERON:0000483!9.00e-09!309;UBERON:0004111!1.24e-08!241;UBERON:0001134!1.39e-08!61;UBERON:0002036!1.39e-08!61;UBERON:0003082!1.39e-08!61;UBERON:0000948!1.39e-08!24;UBERON:0005498!1.39e-08!24;UBERON:0004140!1.39e-08!24;UBERON:0009881!1.39e-08!24;UBERON:0004141!1.39e-08!24;UBERON:0003084!1.39e-08!24;UBERON:0007005!1.39e-08!24;UBERON:0004139!1.39e-08!24;UBERON:0004291!1.39e-08!24;UBERON:0000467!1.87e-08!625;UBERON:0000480!2.34e-08!626;UBERON:0003080!2.40e-08!42;UBERON:0000033!3.58e-08!123;UBERON:0002780!1.02e-07!41;UBERON:0001890!1.02e-07!41;UBERON:0006240!1.02e-07!41;UBERON:0000025!3.74e-07!194;UBERON:0000062!5.16e-07!511|ontology_enrichment_uberon_v019=UBERON:0007100;9.06e-12;25!UBERON:0007023;3.65e-09;114!UBERON:0003978;8.90e-09;3!UBERON:0000946;8.90e-09;3!UBERON:0004151;3.48e-08;3!UBERON:0000948;2.03e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.71e-30,114;UBERON:0007100,1.16e-10,27;UBERON:0003978,9.12e-09,3;UBERON:0009751,9.12e-09,3;UBERON:0000946,9.12e-09,3;UBERON:0002523,9.12e-09,3;UBERON:0005983,9.12e-09,3;UBERON:0002165,9.12e-09,3;UBERON:0002062,9.12e-09,3;UBERON:0007280,9.12e-09,3;UBERON:0003103,1.35e-08,68;UBERON:0004151,3.31e-08,3|phase1_expression=8.53888382571616,3.8538094300377,5.21531295155093,1.0007329835313,3.5756887554183,0,0,1.89515962028049,0.783556884599516,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0,0,0.144846518960824,0,0,0.0945348171640679,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.264818361626438,2.58152958673932,0,0,0,0,3.7345324247972,1.0776853765575,0.490385709340376,4.23800797405808,0.576175924479999,0,0,0,0.149448680551801,0,0,0,0,0.122834317311768,0.103325781175765,2.37600571456411,0.494533858557114,0,0,0,0.125118519871964,0.277064115484183,0,0,0.150238058906597,0.226864366320042,0,0.640672166455702,0,1.20036438433761,0.309157587715317,0,0.930584281657949,0.506328996723799,0,0.504867548488229,0.0920498986422993,0.161646056818812,1.42003837006646,0.302256294682921,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0.112131084345361,0.87192013766656,0,0,3.57656445851882,0.845302752556,0,0,0,0,0,2.00169191121407,0.542621605391443,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,1.30303176000821,0.821905290201534,1.61154866915906,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0.315404830067869,0,0,0,0,0,0,0.173767228936166,0.783204629850962,1.02943027143257,0,0,0,0,0,0,0.992431231275107,0.920771839728375,0.280660094433074,0.640695746278505,0.511707249066704,0.321707842287215,1.48418066444991,0,0.177561725313127,0.164254312027618,0,0.232420756919918,0,0,0,0.459257792658427,0.364182336013434,1.04899531967539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0.328014645699706,0,1.854738209659,0,0,0,0,0,0.290012154876366,0.154048617114644,0,0.413509717453592,0.429680979473094,0.290033387828457,0.340906509664404,0.623224249527161,0,0,0,0,0,1.5740617341532,0,0,0.532306030317022,0.869932992075073,0.18532421910392,0,1.86079184679834,0,0.190630193923825,0,0,0.318203247925937,0,0.899362287916574,0.54907405947211,0.353437207037059,0.404364963146632,1.58510321173008,0.421258456238981,0,0.73114046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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3908 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6482 | |||
|TSSclassifier=S | |||
|UniProt=P24043 | |||
|association_with_transcript=0bp_to_ENST00000421865_5end | |||
|coexpression_cluster_id=C4556 | |||
|description=CAGE_peak_5_at_LAMA2_5end | |||
|id=chr6:129204337..129204348,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002615;5.45e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,1.04e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004872;4.70e-08;7!UBERON:0006603;8.05e-08;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.03e-39!115;UBERON:0000475!9.40e-16!365;UBERON:0002616!4.62e-12!59;UBERON:0005743!1.87e-11!86;UBERON:0000481!2.68e-11!347;UBERON:0007100!4.02e-11!27;UBERON:0001049!5.08e-11!57;UBERON:0005068!5.08e-11!57;UBERON:0006241!5.08e-11!57;UBERON:0007135!5.08e-11!57;UBERON:0000955!7.32e-11!69;UBERON:0006238!7.32e-11!69;UBERON:0000468!8.93e-11!659;UBERON:0001017!1.26e-10!82;UBERON:0000073!2.96e-10!94;UBERON:0001016!2.96e-10!94;UBERON:0003075!4.93e-10!86;UBERON:0007284!4.93e-10!86;UBERON:0002385!1.67e-09!63;UBERON:0001015!1.67e-09!63;UBERON:0000383!1.67e-09!63;UBERON:0000477!2.33e-09!286;UBERON:0000119!4.19e-09!312;UBERON:0000153!4.57e-09!129;UBERON:0007811!4.57e-09!129;UBERON:0002346!5.40e-09!90;UBERON:0000483!9.00e-09!309;UBERON:0004111!1.24e-08!241;UBERON:0001134!1.39e-08!61;UBERON:0002036!1.39e-08!61;UBERON:0003082!1.39e-08!61;UBERON:0000948!1.39e-08!24;UBERON:0005498!1.39e-08!24;UBERON:0004140!1.39e-08!24;UBERON:0009881!1.39e-08!24;UBERON:0004141!1.39e-08!24;UBERON:0003084!1.39e-08!24;UBERON:0007005!1.39e-08!24;UBERON:0004139!1.39e-08!24;UBERON:0004291!1.39e-08!24;UBERON:0000467!1.87e-08!625;UBERON:0000480!2.34e-08!626;UBERON:0003080!2.40e-08!42;UBERON:0000033!3.58e-08!123;UBERON:0002780!1.02e-07!41;UBERON:0001890!1.02e-07!41;UBERON:0006240!1.02e-07!41;UBERON:0000025!3.74e-07!194;UBERON:0000062!5.16e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;9.06e-12;25!UBERON:0007023;3.65e-09;114!UBERON:0003978;8.90e-09;3!UBERON:0000946;8.90e-09;3!UBERON:0004151;3.48e-08;3!UBERON:0000948;2.03e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.71e-30,114;UBERON:0007100,1.16e-10,27;UBERON:0003978,9.12e-09,3;UBERON:0009751,9.12e-09,3;UBERON:0000946,9.12e-09,3;UBERON:0002523,9.12e-09,3;UBERON:0005983,9.12e-09,3;UBERON:0002165,9.12e-09,3;UBERON:0002062,9.12e-09,3;UBERON:0007280,9.12e-09,3;UBERON:0003103,1.35e-08,68;UBERON:0004151,3.31e-08,3 | |||
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| |||
|short_description=p5@LAMA2 | |||
}} |
Revision as of 17:53, 13 September 2013
Short description: | p5@LAMA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_LAMA2_5end |
Coexpression cluster: | C4556_Cardiac_heart_Adipocyte_Smooth_left_Fibroblast_skeletal |
Association with transcript: | 0bp_to_ENST00000421865_5end |
EntrezGene: | LAMA2 |
HGNC: | 6482 |
UniProt: | P24043 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 1.04e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.71e-30 | 114 |
primary circulatory organ | 1.16e-10 | 27 |
valve | 9.12e-09 | 3 |
cardiac mesenchyme | 9.12e-09 | 3 |
cardial valve | 9.12e-09 | 3 |
tunica intima | 9.12e-09 | 3 |
heart layer | 9.12e-09 | 3 |
endocardium | 9.12e-09 | 3 |
endocardial cushion | 9.12e-09 | 3 |
presumptive endocardium | 9.12e-09 | 3 |
compound organ | 1.35e-08 | 68 |
cardiac chamber | 3.31e-08 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.