FFCP PHASE1:Hg19::chr6:21597370..21597408,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6659|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=11200|TSSclassifier=N|UniProt=|association_with_transcript=-252bp_to_AJ420500_5end|coexpression_cluster_id=C1086|description=CAGE_peak_5_at_SOX4_5end|id=chr6:21597370..21597408,+|ontology_enrichment_celltype=CL:0000066!1.22e-21!254;CL:0002321!4.62e-10!248;CL:0000220!1.69e-09!246;CL:0000012!3.89e-09!682;CL:0000548!1.35e-08!679;CL:0000004!1.35e-08!679;CL:0000255!1.35e-08!679|ontology_enrichment_celltype_v019=CL:0002139;5.69e-08;24!CL:1000449;1.68e-07;15!CL:0002078;5.38e-07;45!CL:1000497;5.53e-07;17!CL:0002518;5.53e-07;17!CL:0000540;7.11e-07;6!CL:0000404;7.11e-07;6!CL:0002681;7.28e-07;12!CL:0002584;7.28e-07;12|ontology_enrichment_celltype_v019_2=CL:0000066,3.29e-20,253;CL:0002078,6.64e-09,45;CL:0002321,1.02e-08,250;CL:0002139,3.71e-08,24;CL:0000213,4.42e-08,58;CL:0000215,4.42e-08,58;CL:0000115,1.32e-07,36;CL:1000449,2.93e-07,15;CL:0000540,8.19e-07,6;CL:0000031,8.19e-07,6;CL:0000404,8.19e-07,6;CL:1000497,8.88e-07,17;CL:0002518,8.88e-07,17|ontology_enrichment_development_v019=CL:0000031;7.11e-07;6|ontology_enrichment_disease=DOID:14566!1.60e-12!239;DOID:162!2.03e-12!235;DOID:305!6.19e-09!106;DOID:0050687!8.22e-09!143;DOID:0050686!4.60e-07!137|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:14566,2.16e-10,239;DOID:162,6.41e-10,235;DOID:0050686,1.58e-07,137;DOID:305,2.95e-07,106|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0006554;2.31e-08;30!UBERON:0001008;2.31e-08;30!UBERON:0000353;9.11e-08;15!UBERON:0006555;1.68e-07;15!UBERON:0004819;1.68e-07;15!UBERON:0001285;1.68e-07;15!UBERON:0007684;1.68e-07;15!UBERON:0001225;7.28e-07;12!UBERON:0008987;7.28e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0000353,1.57e-07,15;UBERON:0004211,2.93e-07,15;UBERON:0009773,2.93e-07,15;UBERON:0001231,2.93e-07,15;UBERON:0001285,2.93e-07,15;UBERON:0007684,2.93e-07,15;UBERON:0004208,2.93e-07,15|phase1_expression=1.99846217197612,0.428201047781966,0.704772020479856,1.0007329835313,1.34088328328186,1.74467704820074,0,0,0,1.96587149201207,2.09340350391728,0.873765488520689,0.791300934685361,1.23766352960047,0.662794751455832,3.36162573225888,3.01347264011988,4.38186054232424,6.8310591830671,0.246242116153576,1.02000345622126,2.82109249330279,1.71741592278634,1.09499540058307,1.88313959392204,0.687720651731561,0.328402357799783,1.02324015707783,0.393364276848904,0.383829398097213,0.619264493264304,0,0,0,0.232401601740905,0.568676929949686,0.880801318004542,0,0.802177789880567,0.434021741431704,0,0,0,0,0,0.242584061187816,0,0,0,0.575384784644301,0,0.47296445977717,0.344745680736619,0.645484683583826,0,0,0,0,0,0,0.639337125799041,0,0.199463657621632,0,0,0.56738522469114,0,0,0,0.217188844705117,0.605399502633369,0,0,0.633765858935825,0.637812899895131,0.209658645508376,0.561643155732475,0.450530678524519,0.32145117339416,0.570025487482497,0.79566670879636,0,0,0,0,0,0,0.574752439954483,0,0,0.569212969109448,0,0.764546456250458,1.32171328579026,2.24203425192614,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0.541607727530031,0,0.130059347559878,0,0.552700035571697,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,1.34140171940727,0.383587685530591,1.44575660953827,5.0133791063589,2.31754430337318,0.795285947051099,3.40644409211845,2.3633704291017,2.4390233720882,3.16205228495254,0.72038491523742,1.09288586487763,0.370784442784429,0,0.522389211897802,0.797747763113191,2.62339686735876,1.14398982156026,0.371457501329565,0.596287222100115,1.72046919021225,1.73570250803797,1.13061588384802,1.25849830862972,4.12677062910101,1.46296476575767,2.32575083252396,1.42306505074684,1.67360306382335,3.62546385398232,1.52054421143703,3.66093086322254,1.47065232138347,8.1014194788176,1.16089646769304,0,0.563057402416611,3.06633274931766,1.89853131913626,1.28241220751285,0,0,1.3082821564276,0,1.01304409331664,0,0.286836620748814,0.354668382198357,1.68203280042692,0,1.48000529050296,0,0.538842688278752,0.817309515567294,0.151357427644931,0.576175924479999,0,0,0,0.149448680551801,0,0.161872944368132,0.561803226808994,0.204154171254893,0.122834317311768,0,3.56400857184616,1.23633464639278,0,0,0.336672227908132,0.125118519871964,0,0,0.30648779579902,1.35214253015937,0.907457465280168,0,1.49490172172997,0.635795703478686,0.300091096084402,0.103052529238439,0.515281080091258,0,0.168776332241266,0.194874010322397,0.252433774244115,0.552299391853796,0.484938170456436,0.355009592516614,0.201504196455281,0,1.93260853163297,0.545492241181669,0.860413786167011,5.3668430697022,3.18071443971565,6.39066685782351,5.49403591581463,5.80337957013945,4.01475094983413,0,1.92972281457866,0,1.39310378409594,0.721879481669586,1.30137480043828,2.69735504124963,2.16909926895134,1.54411561825352,2.61455332910887,1.18635309555548,1.07865046528132,0.588664395376038,1.15424147083917,1.4763109092493,1.40241773803446,0.8231480226628,2.94017422771084,0,0,0,9.71218818712231,3.19769940212095,1.3725424823882,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6659 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11200 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-252bp_to_AJ420500_5end | |||
|coexpression_cluster_id=C1086 | |||
|description=CAGE_peak_5_at_SOX4_5end | |||
|id=chr6:21597370..21597408,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.22e-21!254;CL:0002321!4.62e-10!248;CL:0000220!1.69e-09!246;CL:0000012!3.89e-09!682;CL:0000548!1.35e-08!679;CL:0000004!1.35e-08!679;CL:0000255!1.35e-08!679 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.69e-08;24!CL:1000449;1.68e-07;15!CL:0002078;5.38e-07;45!CL:1000497;5.53e-07;17!CL:0002518;5.53e-07;17!CL:0000540;7.11e-07;6!CL:0000404;7.11e-07;6!CL:0002681;7.28e-07;12!CL:0002584;7.28e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.29e-20,253;CL:0002078,6.64e-09,45;CL:0002321,1.02e-08,250;CL:0002139,3.71e-08,24;CL:0000213,4.42e-08,58;CL:0000215,4.42e-08,58;CL:0000115,1.32e-07,36;CL:1000449,2.93e-07,15;CL:0000540,8.19e-07,6;CL:0000031,8.19e-07,6;CL:0000404,8.19e-07,6;CL:1000497,8.88e-07,17;CL:0002518,8.88e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000031;7.11e-07;6 | |||
|ontology_enrichment_disease=DOID:14566!1.60e-12!239;DOID:162!2.03e-12!235;DOID:305!6.19e-09!106;DOID:0050687!8.22e-09!143;DOID:0050686!4.60e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,2.16e-10,239;DOID:162,6.41e-10,235;DOID:0050686,1.58e-07,137;DOID:305,2.95e-07,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.31e-08;30!UBERON:0001008;2.31e-08;30!UBERON:0000353;9.11e-08;15!UBERON:0006555;1.68e-07;15!UBERON:0004819;1.68e-07;15!UBERON:0001285;1.68e-07;15!UBERON:0007684;1.68e-07;15!UBERON:0001225;7.28e-07;12!UBERON:0008987;7.28e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000353,1.57e-07,15;UBERON:0004211,2.93e-07,15;UBERON:0009773,2.93e-07,15;UBERON:0001231,2.93e-07,15;UBERON:0001285,2.93e-07,15;UBERON:0007684,2.93e-07,15;UBERON:0004208,2.93e-07,15 | |||
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| |||
|short_description=p5@SOX4 | |||
}} |
Revision as of 19:36, 13 September 2013
Short description: | p5@SOX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SOX4_5end |
Coexpression cluster: | C1086_occipital_parietal_temporal_duodenum_small_Neurons_transitionalcell |
Association with transcript: | -252bp_to_AJ420500_5end |
EntrezGene: | SOX4 |
HGNC: | 11200 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.29e-20 | 253 |
meso-epithelial cell | 6.64e-09 | 45 |
embryonic cell | 1.02e-08 | 250 |
endothelial cell of vascular tree | 3.71e-08 | 24 |
lining cell | 4.42e-08 | 58 |
barrier cell | 4.42e-08 | 58 |
endothelial cell | 1.32e-07 | 36 |
epithelial cell of nephron | 2.93e-07 | 15 |
neuron | 8.19e-07 | 6 |
neuroblast | 8.19e-07 | 6 |
electrically signaling cell | 8.19e-07 | 6 |
kidney cell | 8.88e-07 | 17 |
kidney epithelial cell | 8.88e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
parenchyma | 1.57e-07 | 15 |
nephron epithelium | 2.93e-07 | 15 |
renal tubule | 2.93e-07 | 15 |
nephron tubule | 2.93e-07 | 15 |
nephron | 2.93e-07 | 15 |
uriniferous tubule | 2.93e-07 | 15 |
nephrogenic mesenchyme | 2.93e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.16e-10 | 239 |
cancer | 6.41e-10 | 235 |
organ system cancer | 1.58e-07 | 137 |
carcinoma | 2.95e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.