FFCP PHASE1:Hg19::chr6:28493753..28493768,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2880|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4557|TSSclassifier=S|UniProt=A1A4Y0,O75715|association_with_transcript=-20bp_to_ENST00000469384,NM_001509,NM_003996,uc003nll.2,uc003nlm.2_5end|coexpression_cluster_id=C39|description=CAGE_peak_1_at_GPX5_5end|id=chr6:28493753..28493768,+|ontology_enrichment_celltype=CL:0000540!1.32e-09!6;CL:0000031!1.32e-09!6;CL:0000404!1.32e-09!6;CL:0000039!2.18e-08!7;CL:0000586!2.18e-08!7;CL:0000047!1.59e-07!8|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0007297;1.55e-98;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001301!1.46e-50!1;UBERON:0003135!5.35e-41!11;UBERON:0000473!1.43e-25!8;UBERON:0003101!4.58e-21!22;UBERON:0000079!4.58e-21!22;UBERON:0006947!6.76e-18!3;UBERON:0004054!6.76e-18!3;UBERON:0005904!8.82e-14!4;UBERON:0000991!1.86e-10!21;UBERON:0009196!1.86e-10!21;UBERON:0009117!1.86e-10!21;UBERON:0005564!1.86e-10!21;UBERON:0003133!3.53e-10!48;UBERON:0004176!4.96e-10!22;UBERON:0005156!1.93e-08!59;UBERON:0000990!1.93e-08!59;UBERON:0003886!5.86e-08!63;UBERON:0002553!3.04e-07!70|ontology_enrichment_uberon_v019=UBERON:0001301;5.42e-195;1!UBERON:0006947;2.39e-66;3!UBERON:0004054;2.39e-66;3!UBERON:0005904;3.10e-50;4!UBERON:0000058;3.81e-21;10!UBERON:0003135;2.25e-19;11!UBERON:0004175;6.74e-11;21!UBERON:0003101;1.80e-10;22!UBERON:0000079;1.80e-10;22|ontology_enrichment_uberon_v019_2=UBERON:0001301,5.42e-195,1;UBERON:0006947,2.39e-66,3;UBERON:0004054,2.39e-66,3;UBERON:0005904,3.10e-50,4;UBERON:0005103,5.22e-26,8;UBERON:0000083,5.22e-26,8;UBERON:0009201,5.22e-26,8;UBERON:0006553,5.22e-26,8;UBERON:0003074,5.22e-26,8;UBERON:0003060,5.22e-26,8;UBERON:0000080,2.62e-23,9;UBERON:0002120,2.62e-23,9;UBERON:0004875,2.62e-23,9;UBERON:0005721,2.62e-23,9;UBERON:0005754,2.62e-23,9;UBERON:0007297,2.62e-23,9;UBERON:0003135,2.25e-19,11;UBERON:0004876,2.25e-19,11;UBERON:0003887,6.76e-18,12;UBERON:0006555,8.02e-14,16;UBERON:0004819,8.02e-14,16;UBERON:0000058,6.95e-12,19;UBERON:0003101,1.80e-10,22;UBERON:0000079,1.80e-10,22;UBERON:0004175,2.15e-09,25;UBERON:0002113,4.34e-09,26;UBERON:0003918,4.34e-09,26;UBERON:0011143,4.34e-09,26;UBERON:0005095,4.34e-09,26;UBERON:0007687,4.34e-09,26;UBERON:0003064,1.52e-08,28;UBERON:0000489,7.41e-08,31|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.16379339792324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p1@GPX5}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2880 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4557 | |||
|TSSclassifier=S | |||
|UniProt=A1A4Y0,O75715 | |||
|association_with_transcript=-20bp_to_ENST00000469384,NM_001509,NM_003996,uc003nll.2,uc003nlm.2_5end | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_1_at_GPX5_5end | |||
|id=chr6:28493753..28493768,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.32e-09!6;CL:0000031!1.32e-09!6;CL:0000404!1.32e-09!6;CL:0000039!2.18e-08!7;CL:0000586!2.18e-08!7;CL:0000047!1.59e-07!8 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007297;1.55e-98;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001301!1.46e-50!1;UBERON:0003135!5.35e-41!11;UBERON:0000473!1.43e-25!8;UBERON:0003101!4.58e-21!22;UBERON:0000079!4.58e-21!22;UBERON:0006947!6.76e-18!3;UBERON:0004054!6.76e-18!3;UBERON:0005904!8.82e-14!4;UBERON:0000991!1.86e-10!21;UBERON:0009196!1.86e-10!21;UBERON:0009117!1.86e-10!21;UBERON:0005564!1.86e-10!21;UBERON:0003133!3.53e-10!48;UBERON:0004176!4.96e-10!22;UBERON:0005156!1.93e-08!59;UBERON:0000990!1.93e-08!59;UBERON:0003886!5.86e-08!63;UBERON:0002553!3.04e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;5.42e-195;1!UBERON:0006947;2.39e-66;3!UBERON:0004054;2.39e-66;3!UBERON:0005904;3.10e-50;4!UBERON:0000058;3.81e-21;10!UBERON:0003135;2.25e-19;11!UBERON:0004175;6.74e-11;21!UBERON:0003101;1.80e-10;22!UBERON:0000079;1.80e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,5.42e-195,1;UBERON:0006947,2.39e-66,3;UBERON:0004054,2.39e-66,3;UBERON:0005904,3.10e-50,4;UBERON:0005103,5.22e-26,8;UBERON:0000083,5.22e-26,8;UBERON:0009201,5.22e-26,8;UBERON:0006553,5.22e-26,8;UBERON:0003074,5.22e-26,8;UBERON:0003060,5.22e-26,8;UBERON:0000080,2.62e-23,9;UBERON:0002120,2.62e-23,9;UBERON:0004875,2.62e-23,9;UBERON:0005721,2.62e-23,9;UBERON:0005754,2.62e-23,9;UBERON:0007297,2.62e-23,9;UBERON:0003135,2.25e-19,11;UBERON:0004876,2.25e-19,11;UBERON:0003887,6.76e-18,12;UBERON:0006555,8.02e-14,16;UBERON:0004819,8.02e-14,16;UBERON:0000058,6.95e-12,19;UBERON:0003101,1.80e-10,22;UBERON:0000079,1.80e-10,22;UBERON:0004175,2.15e-09,25;UBERON:0002113,4.34e-09,26;UBERON:0003918,4.34e-09,26;UBERON:0011143,4.34e-09,26;UBERON:0005095,4.34e-09,26;UBERON:0007687,4.34e-09,26;UBERON:0003064,1.52e-08,28;UBERON:0000489,7.41e-08,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.16379339792324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@GPX5 | |||
}} |
Revision as of 19:52, 13 September 2013
Short description: | p1@GPX5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GPX5_5end |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | -20bp_to_ENST00000469384, NM_001509, NM_003996, uc003nll.2, uc003nlm.2_5end |
EntrezGene: | GPX5 |
HGNC: | 4557 |
UniProt: | A1A4Y0O75715 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epididymis | 5.42e-195 | 1 |
male genital duct | 2.39e-66 | 3 |
internal male genitalia | 2.39e-66 | 3 |
duct of male reproductive system | 3.10e-50 | 4 |
mesonephric epithelium | 5.22e-26 | 8 |
mesonephric tubule | 5.22e-26 | 8 |
nephric duct | 5.22e-26 | 8 |
renal duct | 5.22e-26 | 8 |
mesonephric duct | 5.22e-26 | 8 |
pronephric duct | 5.22e-26 | 8 |
mesonephros | 2.62e-23 | 9 |
pronephros | 2.62e-23 | 9 |
nephrogenic cord | 2.62e-23 | 9 |
pronephric mesoderm | 2.62e-23 | 9 |
rostral part of nephrogenic cord | 2.62e-23 | 9 |
presumptive pronephric mesoderm | 2.62e-23 | 9 |
male reproductive organ | 2.25e-19 | 11 |
urogenital ridge | 2.25e-19 | 11 |
intraembryonic coelom | 6.76e-18 | 12 |
excretory tube | 8.02e-14 | 16 |
kidney epithelium | 8.02e-14 | 16 |
duct | 6.95e-12 | 19 |
male organism | 1.80e-10 | 22 |
male reproductive system | 1.80e-10 | 22 |
internal genitalia | 2.15e-09 | 25 |
kidney | 4.34e-09 | 26 |
kidney mesenchyme | 4.34e-09 | 26 |
upper urinary tract | 4.34e-09 | 26 |
kidney rudiment | 4.34e-09 | 26 |
kidney field | 4.34e-09 | 26 |
intermediate mesoderm | 1.52e-08 | 28 |
cavitated compound organ | 7.41e-08 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.