FFCP PHASE1:Hg19::chr6:43044168..43044181,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5754|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9618|TSSclassifier=S|UniProt=|association_with_transcript=61bp_to_ENST00000487673_5end|coexpression_cluster_id=C4604|description=CAGE_peak_3_at_PTK7_5end|id=chr6:43044168..43044181,+|ontology_enrichment_celltype=CL:0000055!1.16e-25!180;CL:0000057!3.80e-16!75;CL:0002321!1.04e-13!248;CL:0000220!1.49e-13!246;CL:0000548!1.52e-10!679;CL:0000004!1.52e-10!679;CL:0000255!1.52e-10!679;CL:0000012!1.83e-10!682;CL:0000144!2.67e-10!625;CL:0000221!3.71e-09!71;CL:0002371!5.88e-09!591;CL:0000066!7.46e-09!254;CL:0002077!9.38e-08!33;CL:0000183!1.42e-07!59;CL:0002620!1.73e-07!23|ontology_enrichment_celltype_v019=CL:0002620;1.42e-08;23!CL:0000057;8.31e-08;73!CL:0002159;7.97e-07;14|ontology_enrichment_celltype_v019_2=CL:0000057,9.55e-17,76;CL:0002321,6.70e-11,250;CL:0000221,1.89e-08,72;CL:0002620,4.35e-08,23;CL:0002077,7.85e-08,34|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!7.57e-18!365;UBERON:0003102!3.35e-13!95;UBERON:0002097!9.50e-11!40;UBERON:0005085!1.44e-10!29;UBERON:0002199!4.91e-10!45;UBERON:0002416!4.91e-10!45;UBERON:0002100!6.47e-10!216;UBERON:0005256!1.64e-09!143;UBERON:0000119!8.46e-09!312;UBERON:0000486!1.06e-08!82;UBERON:0000468!1.36e-08!659;UBERON:0000483!1.87e-08!309;UBERON:0001444!4.76e-08!48;UBERON:0000914!5.21e-08!83;UBERON:0002329!5.21e-08!83;UBERON:0003077!5.21e-08!83;UBERON:0003059!5.21e-08!83;UBERON:0007282!5.21e-08!83;UBERON:0009618!5.21e-08!83;UBERON:0007285!5.21e-08!83;UBERON:0000481!1.14e-07!347;UBERON:0004923!3.73e-07!57|ontology_enrichment_uberon_v019=UBERON:0002097;9.21e-10;41!UBERON:0010371;1.32e-09;31!UBERON:0003102;5.66e-09;50!UBERON:0002199;7.56e-09;46!UBERON:0002416;7.56e-09;46!UBERON:0000970;3.22e-07;20!UBERON:0000019;5.21e-07;19!UBERON:0000047;5.21e-07;19!UBERON:0004088;5.21e-07;19!UBERON:0010230;5.21e-07;19!UBERON:0004923;6.61e-07;55|ontology_enrichment_uberon_v019_2=UBERON:0003102,4.03e-13,99;UBERON:0002097,4.93e-12,41;UBERON:0005085,1.85e-11,31;UBERON:0002199,4.77e-11,46;UBERON:0002416,4.77e-11,46;UBERON:0004923,1.38e-08,66;UBERON:0000486,2.49e-08,83;UBERON:0000033,4.92e-08,56;UBERON:0001444,7.23e-08,49;UBERON:0007503,6.16e-07,78;UBERON:0002100,7.86e-07,199|phase1_expression=3.27021082687002,1.92690471501885,7.04772020479856,0,4.91657203870017,3.48935409640147,0,1.26343974685366,2.08948502559871,3.44027511102112,3.48900583986214,7.20856528029568,7.91300934685361,4.45558870656168,0.662794751455832,0.672325146451775,1.80808358407193,2.19093027116212,0.487932798790507,3.81675280038043,2.85600967741954,4.07491137921514,1.71741592278634,0.821246550437305,1.12988375635323,0.0764134057479513,0.246301768349837,0.157421562627358,0,0,0.154816123316076,3.67768489791571,2.10844143144775,1.84877005083394,0,0,0.587200878669695,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,1.31692042387539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,4.69490601792545,2.30152611318355,0.361439152384566,1.00267582127178,1.88300474649071,1.5905718941022,1.45990461090791,1.98523116044542,2.66075276955077,2.63504357079378,1.11332214173056,4.73583874780305,4.44941331341315,0,0,0,8.58566247499231,4.57595928624102,5.20040501861391,0,0.860234595106124,0,1.13061588384802,0.419499436209906,0.275118041940067,0.417989933073621,0.516833518338658,0,0.66944122552934,1.61131726843659,1.52054421143703,0.732186172644509,1.10298924103761,0,0.803697554556718,0.898117490504679,0.450445921933289,0,0,0.732806975721629,0,0,3.05265836499774,5.96366342034382,2.65924074495618,4.63432132846266,7.74458876021797,2.83734705758686,1.12135520028461,2.1349799145941,3.20667812942308,1.8672662123986,1.0776853765575,1.14423332179421,6.35701196108712,4.03323147135999,3.51482147750695,2.18512053781224,1.1409436430889,1.94283284717341,1.40921398372518,2.10434827678571,1.12360645361799,1.42907919878425,1.22834317311768,2.58314452939414,5.94001428641027,3.95627086845691,2.73048408581408,8.62341770179486,1.34668891163253,0.750711119231785,2.21651292387346,4.82875382968922,3.37136575378922,7.51190294532984,1.13432183160021,9.14887142013196,6.40672166455702,2.33125091275518,5.10154863343484,2.37020817248409,8.50213782150576,8.56137539125313,14.8523172372314,4.48210223741514,7.06814567883521,9.75728925608373,3.71785930683267,18.4604988108639,4.03008392910561,3.56077243852024,3.28543450377605,3.54569956768085,2.86804595389004,1.70763188581434,1.59035721985782,1.62671520017326,1.65857688024593,1.7662459561294,2.55484151353081,3.12899064659632,6.43240938192885,6.90674606762403,4.17931135228781,10.1063127433742,0.709840800239063,1.01150814046861,1.20505514941741,0.55146986366197,0.653638332277218,0,0.404493924480493,0.588664395376038,0,0,0,2.4694440679884,1.47008711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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5754 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9618 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=61bp_to_ENST00000487673_5end | |||
|coexpression_cluster_id=C4604 | |||
|description=CAGE_peak_3_at_PTK7_5end | |||
|id=chr6:43044168..43044181,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.16e-25!180;CL:0000057!3.80e-16!75;CL:0002321!1.04e-13!248;CL:0000220!1.49e-13!246;CL:0000548!1.52e-10!679;CL:0000004!1.52e-10!679;CL:0000255!1.52e-10!679;CL:0000012!1.83e-10!682;CL:0000144!2.67e-10!625;CL:0000221!3.71e-09!71;CL:0002371!5.88e-09!591;CL:0000066!7.46e-09!254;CL:0002077!9.38e-08!33;CL:0000183!1.42e-07!59;CL:0002620!1.73e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.42e-08;23!CL:0000057;8.31e-08;73!CL:0002159;7.97e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.55e-17,76;CL:0002321,6.70e-11,250;CL:0000221,1.89e-08,72;CL:0002620,4.35e-08,23;CL:0002077,7.85e-08,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!7.57e-18!365;UBERON:0003102!3.35e-13!95;UBERON:0002097!9.50e-11!40;UBERON:0005085!1.44e-10!29;UBERON:0002199!4.91e-10!45;UBERON:0002416!4.91e-10!45;UBERON:0002100!6.47e-10!216;UBERON:0005256!1.64e-09!143;UBERON:0000119!8.46e-09!312;UBERON:0000486!1.06e-08!82;UBERON:0000468!1.36e-08!659;UBERON:0000483!1.87e-08!309;UBERON:0001444!4.76e-08!48;UBERON:0000914!5.21e-08!83;UBERON:0002329!5.21e-08!83;UBERON:0003077!5.21e-08!83;UBERON:0003059!5.21e-08!83;UBERON:0007282!5.21e-08!83;UBERON:0009618!5.21e-08!83;UBERON:0007285!5.21e-08!83;UBERON:0000481!1.14e-07!347;UBERON:0004923!3.73e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;9.21e-10;41!UBERON:0010371;1.32e-09;31!UBERON:0003102;5.66e-09;50!UBERON:0002199;7.56e-09;46!UBERON:0002416;7.56e-09;46!UBERON:0000970;3.22e-07;20!UBERON:0000019;5.21e-07;19!UBERON:0000047;5.21e-07;19!UBERON:0004088;5.21e-07;19!UBERON:0010230;5.21e-07;19!UBERON:0004923;6.61e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,4.03e-13,99;UBERON:0002097,4.93e-12,41;UBERON:0005085,1.85e-11,31;UBERON:0002199,4.77e-11,46;UBERON:0002416,4.77e-11,46;UBERON:0004923,1.38e-08,66;UBERON:0000486,2.49e-08,83;UBERON:0000033,4.92e-08,56;UBERON:0001444,7.23e-08,49;UBERON:0007503,6.16e-07,78;UBERON:0002100,7.86e-07,199 | |||
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| |||
|short_description=p3@PTK7 | |||
}} |
Revision as of 21:04, 13 September 2013
Short description: | p3@PTK7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PTK7_5end |
Coexpression cluster: | C4604_Placental_Amniotic_osteosarcoma_Fibroblast_Mesenchymal_Pericytes_Osteoblast |
Association with transcript: | 61bp_to_ENST00000487673_5end |
EntrezGene: | PTK7 |
HGNC: | 9618 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.55e-17 | 76 |
embryonic cell | 6.70e-11 | 250 |
ectodermal cell | 1.89e-08 | 72 |
skin fibroblast | 4.35e-08 | 23 |
ecto-epithelial cell | 7.85e-08 | 34 |
Ontology term | p-value | n |
---|---|---|
surface structure | 4.03e-13 | 99 |
skin of body | 4.93e-12 | 41 |
ectodermal placode | 1.85e-11 | 31 |
integument | 4.77e-11 | 46 |
integumental system | 4.77e-11 | 46 |
organ component layer | 1.38e-08 | 66 |
multilaminar epithelium | 2.49e-08 | 83 |
head | 4.92e-08 | 56 |
subdivision of head | 7.23e-08 | 49 |
epithelial vesicle | 6.16e-07 | 78 |
trunk | 7.86e-07 | 199 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.