FFCP PHASE1:Hg19::chr7:45952418..45952432,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3486|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=5472|TSSclassifier=N|UniProt=Q71RC0|association_with_transcript=194bp_to_AF370418_5end|coexpression_cluster_id=C223|description=CAGE_peak_11_at_IGFBP3_5end|id=chr7:45952418..45952432,-|ontology_enrichment_celltype=CL:0000057!5.10e-10!75;CL:0002620!2.46e-09!23;CL:0000055!3.92e-09!180;CL:0000153!5.87e-07!9;CL:0000447!5.87e-07!9|ontology_enrichment_celltype_v019=CL:0002620;5.16e-18;23!CL:0000153;1.51e-11;9!CL:0000447;1.51e-11;9!CL:0000327;6.06e-11;15!CL:0000499;8.77e-10;28!CL:0002579;9.46e-09;3!CL:0000135;1.04e-08;3!CL:0000388;1.04e-08;3!CL:0000138;1.69e-08;6!CL:0000136;6.58e-07;13|ontology_enrichment_celltype_v019_2=CL:0002620,5.32e-18,23;CL:0000057,3.88e-14,76;CL:0000153,1.59e-11,9;CL:0000447,1.59e-11,9;CL:0000327,5.13e-11,15;CL:0000499,8.01e-10,28;CL:0000135,1.11e-08,3;CL:0000388,1.11e-08,3;CL:0002579,1.21e-08,3;CL:0000058,1.68e-08,6;CL:0000138,1.68e-08,6;CL:0000048,1.92e-07,427;CL:0000723,3.69e-07,433;CL:0000034,8.55e-07,441|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:17!3.09e-07!5;DOID:450!3.09e-07!5;DOID:66!3.09e-07!5;DOID:423!3.09e-07!5;DOID:0080000!3.09e-07!5;DOID:11722!3.09e-07!5|ontology_enrichment_disease_v019=DOID:17;2.21e-14;5!DOID:450;2.21e-14;5!DOID:66;2.21e-14;5!DOID:423;2.21e-14;5!DOID:0080000;2.21e-14;5!DOID:11722;2.21e-14;5|ontology_enrichment_disease_v019_2=DOID:17,2.32e-14,5;DOID:450,2.32e-14,5;DOID:66,2.32e-14,5;DOID:423,2.32e-14,5;DOID:0080000,2.32e-14,5;DOID:11722,2.32e-14,5|ontology_enrichment_uberon=UBERON:0000478!5.84e-08!24;UBERON:0003688!1.75e-07!6;UBERON:0002358!1.75e-07!6;UBERON:0003684!1.75e-07!6;UBERON:0001178!1.75e-07!6|ontology_enrichment_uberon_v019=UBERON:0004457;2.99e-14;9!UBERON:0000042;2.99e-14;9!UBERON:0003688;2.43e-11;6!UBERON:0002358;2.43e-11;6!UBERON:0003684;2.43e-11;6!UBERON:0001178;2.43e-11;6!UBERON:0007846;1.04e-08;3!UBERON:0000043;1.04e-08;3!UBERON:0007845;1.04e-08;3!UBERON:0002097;2.16e-08;41!UBERON:0002199;1.45e-07;46!UBERON:0002416;1.45e-07;46!UBERON:0005631;8.45e-07;10!UBERON:0000158;8.45e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.00e-11,6;UBERON:0002358,3.00e-11,6;UBERON:0003684,3.00e-11,6;UBERON:0001178,3.00e-11,6;UBERON:0004457,2.55e-10,12;UBERON:0000042,2.55e-10,12;UBERON:0002097,2.64e-10,41;UBERON:0002199,2.96e-10,46;UBERON:0002416,2.96e-10,46;UBERON:0007846,1.11e-08,3;UBERON:0000043,1.11e-08,3;UBERON:0007845,1.11e-08,3|phase1_expression=2.36181893051724,1.49870366723688,2.39622486963151,4.00293193412522,0.446961094427288,2.61701557230111,2.53299878168311,0,0,0.245733936501509,0,0,0.263766978228454,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639312809217652,50.6014813338393,21.0561922467074,18.8300474649071,0.795285947051099,9.73269740605272,0.0945348171640679,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.886413581652058,0,1.14734648299525,0,0.560677600142307,1.06748995729705,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0.150238058906597,0,5.74046834204358,2.13557388818567,6.78182083710598,8.70264178644767,2.47326070172253,3.09168648054755,8.18914167858995,1.18143432568886,1.75386609290158,9.08761587278812,6.16734320903406,0.161646056818812,13.1353549231147,6.2466300901137,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330881918197182,0.217879444092406,0,0,0,0,0,0,0,1.47008711385542,0,0,1.77236972004421,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646358578788889,0,0,0,0,0,0,0,0.285955987316295,0.542621605391443,0,0,0,0,1.20575750823834,0.871533458600294,0,0,0,0,0.479249710983165,1.14861935834114,1.42636905040718,2.17171960001369,0.205476322550383,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03985430765404,0.713715955188647,0.473107245101804,0.585707074963566,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,0,0.604780586659361,0.992431231275107,0.767309866440312,1.96462066103151,2.05022638809122,5.62877973973374,1.28683136914886,0,0,0.710246901252508,0.246381468041427,0,0.464841513839837,0,0,0.0920809889358963,0.574072240823034,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,1.85938219718914,4.40737285562896,0,0,0,0.869932992075073,1.8532421910392,1.14499909393593,0,0,0,0,0,0.318203247925937,0.78494864019923,0,0,0,0.606547444719948,1.58510321173008,0,0,0.974853958525138,0,0,0,2.26016233240486,0.551365343546124,2.65375590096488,7.0152141640602,0,0,0,0,0,0,0,0.7133421029625,0,5.2776908824416,2.30506425071931,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3486 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5472 | |||
|TSSclassifier=N | |||
|UniProt=Q71RC0 | |||
|association_with_transcript=194bp_to_AF370418_5end | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_11_at_IGFBP3_5end | |||
|id=chr7:45952418..45952432,- | |||
|ontology_enrichment_celltype=CL:0000057!5.10e-10!75;CL:0002620!2.46e-09!23;CL:0000055!3.92e-09!180;CL:0000153!5.87e-07!9;CL:0000447!5.87e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.16e-18;23!CL:0000153;1.51e-11;9!CL:0000447;1.51e-11;9!CL:0000327;6.06e-11;15!CL:0000499;8.77e-10;28!CL:0002579;9.46e-09;3!CL:0000135;1.04e-08;3!CL:0000388;1.04e-08;3!CL:0000138;1.69e-08;6!CL:0000136;6.58e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,5.32e-18,23;CL:0000057,3.88e-14,76;CL:0000153,1.59e-11,9;CL:0000447,1.59e-11,9;CL:0000327,5.13e-11,15;CL:0000499,8.01e-10,28;CL:0000135,1.11e-08,3;CL:0000388,1.11e-08,3;CL:0002579,1.21e-08,3;CL:0000058,1.68e-08,6;CL:0000138,1.68e-08,6;CL:0000048,1.92e-07,427;CL:0000723,3.69e-07,433;CL:0000034,8.55e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!3.09e-07!5;DOID:450!3.09e-07!5;DOID:66!3.09e-07!5;DOID:423!3.09e-07!5;DOID:0080000!3.09e-07!5;DOID:11722!3.09e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:17;2.21e-14;5!DOID:450;2.21e-14;5!DOID:66;2.21e-14;5!DOID:423;2.21e-14;5!DOID:0080000;2.21e-14;5!DOID:11722;2.21e-14;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.32e-14,5;DOID:450,2.32e-14,5;DOID:66,2.32e-14,5;DOID:423,2.32e-14,5;DOID:0080000,2.32e-14,5;DOID:11722,2.32e-14,5 | |||
|ontology_enrichment_uberon=UBERON:0000478!5.84e-08!24;UBERON:0003688!1.75e-07!6;UBERON:0002358!1.75e-07!6;UBERON:0003684!1.75e-07!6;UBERON:0001178!1.75e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.99e-14;9!UBERON:0000042;2.99e-14;9!UBERON:0003688;2.43e-11;6!UBERON:0002358;2.43e-11;6!UBERON:0003684;2.43e-11;6!UBERON:0001178;2.43e-11;6!UBERON:0007846;1.04e-08;3!UBERON:0000043;1.04e-08;3!UBERON:0007845;1.04e-08;3!UBERON:0002097;2.16e-08;41!UBERON:0002199;1.45e-07;46!UBERON:0002416;1.45e-07;46!UBERON:0005631;8.45e-07;10!UBERON:0000158;8.45e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.00e-11,6;UBERON:0002358,3.00e-11,6;UBERON:0003684,3.00e-11,6;UBERON:0001178,3.00e-11,6;UBERON:0004457,2.55e-10,12;UBERON:0000042,2.55e-10,12;UBERON:0002097,2.64e-10,41;UBERON:0002199,2.96e-10,46;UBERON:0002416,2.96e-10,46;UBERON:0007846,1.11e-08,3;UBERON:0000043,1.11e-08,3;UBERON:0007845,1.11e-08,3 | |||
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|short_description=p11@IGFBP3 | |||
}} |
Revision as of 01:24, 14 September 2013
Short description: | p11@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | 194bp_to_AF370418_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | Q71RC0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 5.32e-18 | 23 |
fibroblast | 3.88e-14 | 76 |
GAG secreting cell | 1.59e-11 | 9 |
carbohydrate secreting cell | 1.59e-11 | 9 |
extracellular matrix secreting cell | 5.13e-11 | 15 |
stromal cell | 8.01e-10 | 28 |
fibrocyte | 1.11e-08 | 3 |
tendon cell | 1.11e-08 | 3 |
omentum preadipocyte | 1.21e-08 | 3 |
chondroblast | 1.68e-08 | 6 |
chondrocyte | 1.68e-08 | 6 |
multi fate stem cell | 1.92e-07 | 427 |
somatic stem cell | 3.69e-07 | 433 |
stem cell | 8.55e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
omentum | 3.00e-11 | 6 |
peritoneum | 3.00e-11 | 6 |
abdominal cavity | 3.00e-11 | 6 |
visceral peritoneum | 3.00e-11 | 6 |
cavity lining | 2.55e-10 | 12 |
serous membrane | 2.55e-10 | 12 |
skin of body | 2.64e-10 | 41 |
integument | 2.96e-10 | 46 |
integumental system | 2.96e-10 | 46 |
dense regular connective tissue | 1.11e-08 | 3 |
tendon | 1.11e-08 | 3 |
regular connective tissue | 1.11e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.32e-14 | 5 |
myotonic disease | 2.32e-14 | 5 |
muscle tissue disease | 2.32e-14 | 5 |
myopathy | 2.32e-14 | 5 |
muscular disease | 2.32e-14 | 5 |
myotonic dystrophy | 2.32e-14 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.