FFCP PHASE1:Hg19::chr7:94055753..94055769,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1278|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2198|TSSclassifier=S|UniProt=|association_with_transcript=-52bp_to_ENST00000488121_5end|coexpression_cluster_id=C59|description=CAGE_peak_26_at_COL1A2_5end|id=chr7:94055753..94055769,+|ontology_enrichment_celltype=CL:0000055!1.31e-37!180;CL:0000057!4.06e-21!75;CL:0000680!1.16e-18!57;CL:0000056!1.16e-18!57;CL:0000355!1.16e-18!57;CL:0000187!2.24e-17!54;CL:0000183!1.21e-16!59;CL:0000393!2.67e-16!60;CL:0000211!2.67e-16!60;CL:0000192!1.74e-13!42;CL:0000514!1.74e-13!42;CL:0000048!1.76e-12!430;CL:0000723!1.12e-11!436;CL:0000034!3.06e-11!444;CL:0000359!8.11e-10!32;CL:0002334!1.37e-08!12;CL:0002620!5.32e-08!23;CL:0002494!2.13e-07!16;CL:0000499!9.10e-07!27|ontology_enrichment_celltype_v019=CL:0000153;1.45e-08;9!CL:0000447;1.45e-08;9!CL:0002334;9.06e-08;12!CL:0000327;1.48e-07;15!CL:0002559;1.58e-07;5!CL:0000499;1.97e-07;28!CL:0000138;2.21e-07;6!CL:0002620;2.41e-07;23!CL:0002494;4.50e-07;16!CL:0000135;7.52e-07;3!CL:0000388;7.52e-07;3|ontology_enrichment_celltype_v019_2=CL:0000057,1.35e-17,76;CL:0000048,8.38e-12,427;CL:0000723,2.67e-11,433;CL:0000034,1.18e-10,441;CL:0000153,2.78e-08,9;CL:0000447,2.78e-08,9;CL:0002320,3.17e-08,361;CL:0000134,6.15e-08,354;CL:0002334,7.72e-08,12;CL:0002559,1.25e-07,5;CL:0000327,2.25e-07,15;CL:0000499,2.38e-07,28;CL:0002620,2.49e-07,23;CL:0000058,3.93e-07,6;CL:0000138,3.93e-07,6;CL:0002494,4.72e-07,16;CL:0002570,6.85e-07,8;CL:0000135,7.64e-07,3;CL:0000388,7.64e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!6.08e-21!83;UBERON:0002329!6.08e-21!83;UBERON:0003077!6.08e-21!83;UBERON:0003059!6.08e-21!83;UBERON:0007282!6.08e-21!83;UBERON:0009618!6.08e-21!83;UBERON:0007285!6.08e-21!83;UBERON:0004290!3.23e-20!70;UBERON:0001134!5.85e-19!61;UBERON:0002036!5.85e-19!61;UBERON:0003082!5.85e-19!61;UBERON:0002385!1.38e-18!63;UBERON:0001015!1.38e-18!63;UBERON:0000383!1.38e-18!63;UBERON:0000486!1.89e-16!82;UBERON:0005256!2.03e-12!143;UBERON:0004872!9.53e-10!84;UBERON:0002100!3.99e-09!216;UBERON:0000948!1.79e-07!24;UBERON:0005498!1.79e-07!24;UBERON:0004140!1.79e-07!24;UBERON:0009881!1.79e-07!24;UBERON:0004141!1.79e-07!24;UBERON:0003084!1.79e-07!24;UBERON:0007005!1.79e-07!24;UBERON:0004139!1.79e-07!24;UBERON:0004291!1.79e-07!24;UBERON:0004535!4.80e-07!110;UBERON:0000490!5.83e-07!138;UBERON:0001637!9.00e-07!42;UBERON:0003509!9.00e-07!42;UBERON:0004572!9.00e-07!42;UBERON:0001135!9.77e-07!15;UBERON:0000475!9.99e-07!365|ontology_enrichment_uberon_v019=UBERON:0004457;5.11e-10;9!UBERON:0000042;5.11e-10;9!UBERON:0003688;4.93e-09;6!UBERON:0002358;4.93e-09;6!UBERON:0003684;4.93e-09;6!UBERON:0001178;4.93e-09;6!UBERON:0002384;1.15e-07;198!UBERON:0002073;1.58e-07;5!UBERON:0002097;2.81e-07;41!UBERON:0007846;7.52e-07;3!UBERON:0000043;7.52e-07;3!UBERON:0007845;7.52e-07;3!UBERON:0002199;8.56e-07;46!UBERON:0002416;8.56e-07;46|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.64e-09,6;UBERON:0002358,1.64e-09,6;UBERON:0003684,1.64e-09,6;UBERON:0001178,1.64e-09,6;UBERON:0002097,4.08e-09,41;UBERON:0002384,5.83e-09,371;UBERON:0002199,1.76e-08,46;UBERON:0002416,1.76e-08,46;UBERON:0002073,1.25e-07,5;UBERON:0005086,1.25e-07,5;UBERON:0004457,2.29e-07,12;UBERON:0000042,2.29e-07,12;UBERON:0007524,3.41e-07,73;UBERON:0007846,7.64e-07,3;UBERON:0000043,7.64e-07,3;UBERON:0007845,7.64e-07,3|phase1_expression=2.54349730978779,3.63970890614671,1.69145284915165,3.00219895059391,1.78784437770915,0.872338524100369,0,0,0,0,0,0,0.263766978228454,0.37129905888014,0.994192127183747,1.34465029290355,0,2.92124036154949,2.43966399395253,0.246242116153576,0.204000691244253,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,1.15076305659177,2.1686349143074,1.00267582127178,4.92478164466801,3.1811437882044,10.2193322763554,0.0945348171640679,0.221729397462564,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97577561356255,0.633152558322899,0.529636723252875,2.58152958673932,1.06400514659507,1.12135520028461,1.06748995729705,1.97334038733728,0.622422070799533,1.34710672069688,0.163461903113459,0.908144565869588,2.30470369792,0,0.312160076830321,0,0.747243402759005,0,0,0.280901613404497,0.204154171254893,0.368502951935304,0.619954687054593,0,4.45080472701402,0,0,0,0.125118519871964,0,2.19488810440419,3.37136575378922,3.45547535485173,0.680593098960126,1.4351170855109,4.05759038755278,2.54318281391474,1.50045548042201,0.309157587715317,2.06112432036503,2.04728541964749,2.53164498361899,1.46155507741798,1.7670364197088,1.38074847963449,2.10139873864455,2.13005755509969,0.705264687593482,0.339121184620975,0,0,0,0.1219737061295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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1278 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2198 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-52bp_to_ENST00000488121_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_26_at_COL1A2_5end | |||
|id=chr7:94055753..94055769,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.31e-37!180;CL:0000057!4.06e-21!75;CL:0000680!1.16e-18!57;CL:0000056!1.16e-18!57;CL:0000355!1.16e-18!57;CL:0000187!2.24e-17!54;CL:0000183!1.21e-16!59;CL:0000393!2.67e-16!60;CL:0000211!2.67e-16!60;CL:0000192!1.74e-13!42;CL:0000514!1.74e-13!42;CL:0000048!1.76e-12!430;CL:0000723!1.12e-11!436;CL:0000034!3.06e-11!444;CL:0000359!8.11e-10!32;CL:0002334!1.37e-08!12;CL:0002620!5.32e-08!23;CL:0002494!2.13e-07!16;CL:0000499!9.10e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000153;1.45e-08;9!CL:0000447;1.45e-08;9!CL:0002334;9.06e-08;12!CL:0000327;1.48e-07;15!CL:0002559;1.58e-07;5!CL:0000499;1.97e-07;28!CL:0000138;2.21e-07;6!CL:0002620;2.41e-07;23!CL:0002494;4.50e-07;16!CL:0000135;7.52e-07;3!CL:0000388;7.52e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.35e-17,76;CL:0000048,8.38e-12,427;CL:0000723,2.67e-11,433;CL:0000034,1.18e-10,441;CL:0000153,2.78e-08,9;CL:0000447,2.78e-08,9;CL:0002320,3.17e-08,361;CL:0000134,6.15e-08,354;CL:0002334,7.72e-08,12;CL:0002559,1.25e-07,5;CL:0000327,2.25e-07,15;CL:0000499,2.38e-07,28;CL:0002620,2.49e-07,23;CL:0000058,3.93e-07,6;CL:0000138,3.93e-07,6;CL:0002494,4.72e-07,16;CL:0002570,6.85e-07,8;CL:0000135,7.64e-07,3;CL:0000388,7.64e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.08e-21!83;UBERON:0002329!6.08e-21!83;UBERON:0003077!6.08e-21!83;UBERON:0003059!6.08e-21!83;UBERON:0007282!6.08e-21!83;UBERON:0009618!6.08e-21!83;UBERON:0007285!6.08e-21!83;UBERON:0004290!3.23e-20!70;UBERON:0001134!5.85e-19!61;UBERON:0002036!5.85e-19!61;UBERON:0003082!5.85e-19!61;UBERON:0002385!1.38e-18!63;UBERON:0001015!1.38e-18!63;UBERON:0000383!1.38e-18!63;UBERON:0000486!1.89e-16!82;UBERON:0005256!2.03e-12!143;UBERON:0004872!9.53e-10!84;UBERON:0002100!3.99e-09!216;UBERON:0000948!1.79e-07!24;UBERON:0005498!1.79e-07!24;UBERON:0004140!1.79e-07!24;UBERON:0009881!1.79e-07!24;UBERON:0004141!1.79e-07!24;UBERON:0003084!1.79e-07!24;UBERON:0007005!1.79e-07!24;UBERON:0004139!1.79e-07!24;UBERON:0004291!1.79e-07!24;UBERON:0004535!4.80e-07!110;UBERON:0000490!5.83e-07!138;UBERON:0001637!9.00e-07!42;UBERON:0003509!9.00e-07!42;UBERON:0004572!9.00e-07!42;UBERON:0001135!9.77e-07!15;UBERON:0000475!9.99e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;5.11e-10;9!UBERON:0000042;5.11e-10;9!UBERON:0003688;4.93e-09;6!UBERON:0002358;4.93e-09;6!UBERON:0003684;4.93e-09;6!UBERON:0001178;4.93e-09;6!UBERON:0002384;1.15e-07;198!UBERON:0002073;1.58e-07;5!UBERON:0002097;2.81e-07;41!UBERON:0007846;7.52e-07;3!UBERON:0000043;7.52e-07;3!UBERON:0007845;7.52e-07;3!UBERON:0002199;8.56e-07;46!UBERON:0002416;8.56e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.64e-09,6;UBERON:0002358,1.64e-09,6;UBERON:0003684,1.64e-09,6;UBERON:0001178,1.64e-09,6;UBERON:0002097,4.08e-09,41;UBERON:0002384,5.83e-09,371;UBERON:0002199,1.76e-08,46;UBERON:0002416,1.76e-08,46;UBERON:0002073,1.25e-07,5;UBERON:0005086,1.25e-07,5;UBERON:0004457,2.29e-07,12;UBERON:0000042,2.29e-07,12;UBERON:0007524,3.41e-07,73;UBERON:0007846,7.64e-07,3;UBERON:0000043,7.64e-07,3;UBERON:0007845,7.64e-07,3 | |||
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| |||
|short_description=p26@COL1A2 | |||
}} |
Revision as of 02:31, 14 September 2013
Short description: | p26@COL1A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_26_at_COL1A2_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -52bp_to_ENST00000488121_5end |
EntrezGene: | COL1A2 |
HGNC: | 2198 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.35e-17 | 76 |
multi fate stem cell | 8.38e-12 | 427 |
somatic stem cell | 2.67e-11 | 433 |
stem cell | 1.18e-10 | 441 |
GAG secreting cell | 2.78e-08 | 9 |
carbohydrate secreting cell | 2.78e-08 | 9 |
connective tissue cell | 3.17e-08 | 361 |
mesenchymal cell | 6.15e-08 | 354 |
preadipocyte | 7.72e-08 | 12 |
hair follicle cell | 1.25e-07 | 5 |
extracellular matrix secreting cell | 2.25e-07 | 15 |
stromal cell | 2.38e-07 | 28 |
skin fibroblast | 2.49e-07 | 23 |
chondroblast | 3.93e-07 | 6 |
chondrocyte | 3.93e-07 | 6 |
cardiocyte | 4.72e-07 | 16 |
mesenchymal stem cell of adipose | 6.85e-07 | 8 |
fibrocyte | 7.64e-07 | 3 |
tendon cell | 7.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.64e-09 | 6 |
peritoneum | 1.64e-09 | 6 |
abdominal cavity | 1.64e-09 | 6 |
visceral peritoneum | 1.64e-09 | 6 |
skin of body | 4.08e-09 | 41 |
connective tissue | 5.83e-09 | 371 |
integument | 1.76e-08 | 46 |
integumental system | 1.76e-08 | 46 |
hair follicle | 1.25e-07 | 5 |
hair follicle placode | 1.25e-07 | 5 |
cavity lining | 2.29e-07 | 12 |
serous membrane | 2.29e-07 | 12 |
dense mesenchyme tissue | 3.41e-07 | 73 |
dense regular connective tissue | 7.64e-07 | 3 |
tendon | 7.64e-07 | 3 |
regular connective tissue | 7.64e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.