FFCP PHASE1:Hg19::chr8:22435762..22435782,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64236|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=13992|TSSclassifier=S|UniProt=C9JSR2|association_with_transcript=-9bp_to_ENST00000456545_5end|coexpression_cluster_id=C629|description=CAGE_peak_9_at_PDLIM2_5end|id=chr8:22435762..22435782,+|ontology_enrichment_celltype=CL:0002368!5.63e-20!13;CL:0002076!1.81e-19!43;CL:0002159!8.85e-15!13;CL:0002202!9.66e-13!9;CL:0002632!9.66e-13!9;CL:0000223!1.17e-12!59;CL:0002621!1.05e-08!3;CL:0000066!1.67e-08!254;CL:0002166!1.87e-08!3;CL:0002328!2.92e-08!3;CL:0000240!2.09e-07!6;CL:0000311!2.09e-07!6;CL:0000079!2.09e-07!6;CL:0000237!2.09e-07!6;CL:0000036!2.09e-07!6;CL:0000357!2.09e-07!6;CL:0000114!2.09e-07!6|ontology_enrichment_celltype_v019=CL:0002159;6.24e-21;14!CL:0002621;6.18e-19;3!CL:0000240;4.69e-17;6!CL:0000311;4.69e-17;6!CL:0000079;4.69e-17;6!CL:0000237;4.69e-17;6!CL:0000312;4.48e-12;5!CL:0000362;1.99e-11;9!CL:0002251;1.25e-10;20!CL:0002166;4.17e-09;3!CL:0002076;2.63e-08;42!CL:0002077;1.80e-07;34!CL:0002336;1.91e-07;1!CL:0002261;1.91e-07;1!CL:0002252;1.91e-07;1!CL:0002170;1.91e-07;1|ontology_enrichment_celltype_v019_2=CL:0002159,9.31e-21,14;CL:0002621,4.00e-19,3;CL:0000240,7.12e-17,6;CL:0000311,7.12e-17,6;CL:0000079,7.12e-17,6;CL:0000237,7.12e-17,6;CL:0000036,7.12e-17,6;CL:0000357,7.12e-17,6;CL:0000114,7.12e-17,6;CL:0000312,5.03e-12,5;CL:0000362,2.35e-11,9;CL:0002251,1.12e-10,20;CL:0002166,5.35e-09,3;CL:0002076,3.13e-08,42;CL:0002077,4.59e-08,34;CL:0002252,1.30e-07,1;CL:0002336,2.98e-07,1;CL:0002261,2.98e-07,1;CL:0002170,2.98e-07,1|ontology_enrichment_development_v019=CL:0000357;4.69e-17;6!CL:0000114;4.69e-17;6!UBERON:0009143;4.88e-08;1!UBERON:0004874;1.91e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3111;1.91e-07;1!DOID:3603;1.91e-07;1|ontology_enrichment_disease_v019_2=DOID:3111,1.91e-07,1;DOID:3603,1.91e-07,1|ontology_enrichment_uberon=UBERON:0001004!4.64e-13!72;UBERON:0000065!4.72e-13!53;UBERON:0007196!7.31e-13!14;UBERON:0001558!7.31e-13!14;UBERON:0004119!3.81e-12!169;UBERON:0000925!3.81e-12!169;UBERON:0006595!3.81e-12!169;UBERON:0005178!4.83e-11!34;UBERON:0002224!4.83e-11!34;UBERON:0005631!1.24e-10!14;UBERON:0000158!1.24e-10!14;UBERON:0005181!1.25e-10!35;UBERON:0001007!5.26e-09!155;UBERON:0001555!5.26e-09!155;UBERON:0007026!5.26e-09!155;UBERON:0000305!6.45e-09!7;UBERON:0001949!1.05e-08!3;UBERON:0001723!2.72e-08!3;UBERON:0001033!2.72e-08!3;UBERON:0010056!2.72e-08!3;UBERON:0004815!2.92e-08!3;UBERON:0002031!2.92e-08!3;UBERON:0004871!9.55e-08!8;UBERON:0000072!2.19e-07!46;UBERON:0005153!8.54e-07!37;UBERON:0000077!9.06e-07!130|ontology_enrichment_uberon_v019=UBERON:0001949;6.18e-19;3!UBERON:0000344;1.22e-10;20!UBERON:0000165;3.86e-10;28!UBERON:0001723;1.43e-09;3!UBERON:0001033;1.43e-09;3!UBERON:0001043;1.73e-09;3!UBERON:0010371;7.57e-09;31!UBERON:0003929;2.03e-08;7!UBERON:0002372;5.96e-08;1!UBERON:0001961;5.96e-08;1!UBERON:0001744;5.96e-08;1!UBERON:0001042;5.96e-08;1!UBERON:0001735;5.96e-08;1!UBERON:0005795;9.43e-08;1!UBERON:0003729;1.05e-07;13!UBERON:0000989;1.91e-07;1!UBERON:0008811;1.91e-07;1!UBERON:0003350;2.01e-07;8!UBERON:0001828;2.01e-07;8!UBERON:0001708;4.90e-07;4!UBERON:0008895;4.90e-07;4!UBERON:0001003;6.77e-07;15!UBERON:0007376;6.77e-07;15!UBERON:0001555;8.31e-07;54|ontology_enrichment_uberon_v019_2=UBERON:0001949,4.00e-19,3;UBERON:0000344,1.22e-10,20;UBERON:0000153,3.87e-10,62;UBERON:0007811,3.87e-10,62;UBERON:0000166,7.69e-10,22;UBERON:0000165,9.45e-10,29;UBERON:0000930,9.45e-10,29;UBERON:0001043,1.40e-09,3;UBERON:0009143,1.40e-09,3;UBERON:0001723,1.53e-09,3;UBERON:0001033,1.53e-09,3;UBERON:0010056,1.53e-09,3;UBERON:0003102,1.72e-09,99;UBERON:0000033,2.53e-09,56;UBERON:0002372,5.96e-08,1;UBERON:0001961,5.96e-08,1;UBERON:0001744,5.96e-08,1;UBERON:0001735,5.96e-08,1;UBERON:0004923,7.68e-08,66;UBERON:0003729,1.05e-07,13;UBERON:0005631,1.15e-07,14;UBERON:0000158,1.15e-07,14;UBERON:0003350,1.72e-07,8;UBERON:0001828,1.72e-07,8;UBERON:0000989,1.80e-07,1;UBERON:0008811,1.80e-07,1;UBERON:0006258,1.80e-07,1;UBERON:0005876,1.80e-07,1;UBERON:0004874,1.80e-07,1;UBERON:0001444,5.26e-07,49;UBERON:0001708,5.90e-07,4;UBERON:0008895,5.90e-07,4;UBERON:0001003,7.44e-07,15;UBERON:0007376,7.44e-07,15;UBERON:0007383,7.44e-07,15|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,4.18680700783456,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0.919421224478927,1.204823675113,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0.821127996921047,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73934767846967,1.36373060295417,1.7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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64236 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13992 | |||
|TSSclassifier=S | |||
|UniProt=C9JSR2 | |||
|association_with_transcript=-9bp_to_ENST00000456545_5end | |||
|coexpression_cluster_id=C629 | |||
|description=CAGE_peak_9_at_PDLIM2_5end | |||
|id=chr8:22435762..22435782,+ | |||
|ontology_enrichment_celltype=CL:0002368!5.63e-20!13;CL:0002076!1.81e-19!43;CL:0002159!8.85e-15!13;CL:0002202!9.66e-13!9;CL:0002632!9.66e-13!9;CL:0000223!1.17e-12!59;CL:0002621!1.05e-08!3;CL:0000066!1.67e-08!254;CL:0002166!1.87e-08!3;CL:0002328!2.92e-08!3;CL:0000240!2.09e-07!6;CL:0000311!2.09e-07!6;CL:0000079!2.09e-07!6;CL:0000237!2.09e-07!6;CL:0000036!2.09e-07!6;CL:0000357!2.09e-07!6;CL:0000114!2.09e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002159;6.24e-21;14!CL:0002621;6.18e-19;3!CL:0000240;4.69e-17;6!CL:0000311;4.69e-17;6!CL:0000079;4.69e-17;6!CL:0000237;4.69e-17;6!CL:0000312;4.48e-12;5!CL:0000362;1.99e-11;9!CL:0002251;1.25e-10;20!CL:0002166;4.17e-09;3!CL:0002076;2.63e-08;42!CL:0002077;1.80e-07;34!CL:0002336;1.91e-07;1!CL:0002261;1.91e-07;1!CL:0002252;1.91e-07;1!CL:0002170;1.91e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,9.31e-21,14;CL:0002621,4.00e-19,3;CL:0000240,7.12e-17,6;CL:0000311,7.12e-17,6;CL:0000079,7.12e-17,6;CL:0000237,7.12e-17,6;CL:0000036,7.12e-17,6;CL:0000357,7.12e-17,6;CL:0000114,7.12e-17,6;CL:0000312,5.03e-12,5;CL:0000362,2.35e-11,9;CL:0002251,1.12e-10,20;CL:0002166,5.35e-09,3;CL:0002076,3.13e-08,42;CL:0002077,4.59e-08,34;CL:0002252,1.30e-07,1;CL:0002336,2.98e-07,1;CL:0002261,2.98e-07,1;CL:0002170,2.98e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000357;4.69e-17;6!CL:0000114;4.69e-17;6!UBERON:0009143;4.88e-08;1!UBERON:0004874;1.91e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3111;1.91e-07;1!DOID:3603;1.91e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,1.91e-07,1;DOID:3603,1.91e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!4.64e-13!72;UBERON:0000065!4.72e-13!53;UBERON:0007196!7.31e-13!14;UBERON:0001558!7.31e-13!14;UBERON:0004119!3.81e-12!169;UBERON:0000925!3.81e-12!169;UBERON:0006595!3.81e-12!169;UBERON:0005178!4.83e-11!34;UBERON:0002224!4.83e-11!34;UBERON:0005631!1.24e-10!14;UBERON:0000158!1.24e-10!14;UBERON:0005181!1.25e-10!35;UBERON:0001007!5.26e-09!155;UBERON:0001555!5.26e-09!155;UBERON:0007026!5.26e-09!155;UBERON:0000305!6.45e-09!7;UBERON:0001949!1.05e-08!3;UBERON:0001723!2.72e-08!3;UBERON:0001033!2.72e-08!3;UBERON:0010056!2.72e-08!3;UBERON:0004815!2.92e-08!3;UBERON:0002031!2.92e-08!3;UBERON:0004871!9.55e-08!8;UBERON:0000072!2.19e-07!46;UBERON:0005153!8.54e-07!37;UBERON:0000077!9.06e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;6.18e-19;3!UBERON:0000344;1.22e-10;20!UBERON:0000165;3.86e-10;28!UBERON:0001723;1.43e-09;3!UBERON:0001033;1.43e-09;3!UBERON:0001043;1.73e-09;3!UBERON:0010371;7.57e-09;31!UBERON:0003929;2.03e-08;7!UBERON:0002372;5.96e-08;1!UBERON:0001961;5.96e-08;1!UBERON:0001744;5.96e-08;1!UBERON:0001042;5.96e-08;1!UBERON:0001735;5.96e-08;1!UBERON:0005795;9.43e-08;1!UBERON:0003729;1.05e-07;13!UBERON:0000989;1.91e-07;1!UBERON:0008811;1.91e-07;1!UBERON:0003350;2.01e-07;8!UBERON:0001828;2.01e-07;8!UBERON:0001708;4.90e-07;4!UBERON:0008895;4.90e-07;4!UBERON:0001003;6.77e-07;15!UBERON:0007376;6.77e-07;15!UBERON:0001555;8.31e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,4.00e-19,3;UBERON:0000344,1.22e-10,20;UBERON:0000153,3.87e-10,62;UBERON:0007811,3.87e-10,62;UBERON:0000166,7.69e-10,22;UBERON:0000165,9.45e-10,29;UBERON:0000930,9.45e-10,29;UBERON:0001043,1.40e-09,3;UBERON:0009143,1.40e-09,3;UBERON:0001723,1.53e-09,3;UBERON:0001033,1.53e-09,3;UBERON:0010056,1.53e-09,3;UBERON:0003102,1.72e-09,99;UBERON:0000033,2.53e-09,56;UBERON:0002372,5.96e-08,1;UBERON:0001961,5.96e-08,1;UBERON:0001744,5.96e-08,1;UBERON:0001735,5.96e-08,1;UBERON:0004923,7.68e-08,66;UBERON:0003729,1.05e-07,13;UBERON:0005631,1.15e-07,14;UBERON:0000158,1.15e-07,14;UBERON:0003350,1.72e-07,8;UBERON:0001828,1.72e-07,8;UBERON:0000989,1.80e-07,1;UBERON:0008811,1.80e-07,1;UBERON:0006258,1.80e-07,1;UBERON:0005876,1.80e-07,1;UBERON:0004874,1.80e-07,1;UBERON:0001444,5.26e-07,49;UBERON:0001708,5.90e-07,4;UBERON:0008895,5.90e-07,4;UBERON:0001003,7.44e-07,15;UBERON:0007376,7.44e-07,15;UBERON:0007383,7.44e-07,15 | |||
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|short_description=p9@PDLIM2 | |||
}} |
Revision as of 04:38, 14 September 2013
Short description: | p9@PDLIM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_PDLIM2_5end |
Coexpression cluster: | C629_esophagus_amniotic_tongue_throat_tonsil_uterus_salivary |
Association with transcript: | -9bp_to_ENST00000456545_5end |
EntrezGene: | PDLIM2 |
HGNC: | 13992 |
UniProt: | C9JSR2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 9.31e-21 | 14 |
gingival epithelial cell | 4.00e-19 | 3 |
stratified squamous epithelial cell | 7.12e-17 | 6 |
keratin accumulating cell | 7.12e-17 | 6 |
stratified epithelial cell | 7.12e-17 | 6 |
keratinizing barrier epithelial cell | 7.12e-17 | 6 |
epithelial fate stem cell | 7.12e-17 | 6 |
stratified epithelial stem cell | 7.12e-17 | 6 |
surface ectodermal cell | 7.12e-17 | 6 |
keratinocyte | 5.03e-12 | 5 |
epidermal cell | 2.35e-11 | 9 |
epithelial cell of alimentary canal | 1.12e-10 | 20 |
epithelial cell of Malassez | 5.35e-09 | 3 |
endo-epithelial cell | 3.13e-08 | 42 |
ecto-epithelial cell | 4.59e-08 | 34 |
epithelial cell of esophagus | 1.30e-07 | 1 |
buccal mucosa cell | 2.98e-07 | 1 |
endothelial cell of viscerocranial mucosa | 2.98e-07 | 1 |
keratinized cell of the oral mucosa | 2.98e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 4.00e-19 | 3 |
mucosa | 1.22e-10 | 20 |
anterior region of body | 3.87e-10 | 62 |
craniocervical region | 3.87e-10 | 62 |
oral opening | 7.69e-10 | 22 |
mouth | 9.45e-10 | 29 |
stomodeum | 9.45e-10 | 29 |
esophagus | 1.40e-09 | 3 |
esophageal region | 1.40e-09 | 3 |
tongue | 1.53e-09 | 3 |
gustatory system | 1.53e-09 | 3 |
future tongue | 1.53e-09 | 3 |
surface structure | 1.72e-09 | 99 |
head | 2.53e-09 | 56 |
tonsil | 5.96e-08 | 1 |
mucosa-associated lymphoid tissue | 5.96e-08 | 1 |
lymphoid tissue | 5.96e-08 | 1 |
tonsillar ring | 5.96e-08 | 1 |
organ component layer | 7.68e-08 | 66 |
mouth mucosa | 1.05e-07 | 13 |
extraembryonic membrane | 1.15e-07 | 14 |
membranous layer | 1.15e-07 | 14 |
epithelium of mucosa | 1.72e-07 | 8 |
gingiva | 1.72e-07 | 8 |
penis | 1.80e-07 | 1 |
intromittent organ | 1.80e-07 | 1 |
lateral plate mesenchyme | 1.80e-07 | 1 |
undifferentiated genital tubercle | 1.80e-07 | 1 |
somatopleure | 1.80e-07 | 1 |
subdivision of head | 5.26e-07 | 49 |
jaw skeleton | 5.90e-07 | 4 |
splanchnocranium | 5.90e-07 | 4 |
skin epidermis | 7.44e-07 | 15 |
outer epithelium | 7.44e-07 | 15 |
enveloping layer of ectoderm | 7.44e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 1.91e-07 | 1 |
mucinous cystadenocarcinoma | 1.91e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.