FFCP PHASE1:Hg19::chr8:42623846..42623865,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8973|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15963|TSSclassifier=S|UniProt=|association_with_transcript=-55bp_to_ENST00000529467_5end|coexpression_cluster_id=C74|description=CAGE_peak_2_at_CHRNA6_5end|id=chr8:42623846..42623865,-|ontology_enrichment_celltype=CL:0000542!3.04e-21!53;CL:0000051!3.04e-21!53;CL:0000838!9.70e-19!52;CL:0000945!4.59e-18!24;CL:0000826!4.59e-18!24;CL:0000785!8.36e-13!2;CL:0000955!8.36e-13!2;CL:0000818!8.36e-13!2;CL:0000954!8.36e-13!2;CL:0000816!8.36e-13!2;CL:0000817!8.09e-09!3;CL:0002087!1.26e-07!119;CL:0000946!2.50e-07!1;CL:0000786!2.50e-07!1;CL:0000980!2.50e-07!1;CL:0000819!3.78e-07!1|ontology_enrichment_celltype_v019=CL:0000946;7.05e-34;1!CL:0000786;7.05e-34;1!CL:0000945;4.19e-13;24!CL:0000542;6.81e-08;53|ontology_enrichment_celltype_v019_2=CL:0000946,5.05e-34,1;CL:0000786,5.05e-34,1;CL:0000980,5.05e-34,1;CL:0000785,9.07e-18,2;CL:0000955,9.07e-18,2;CL:0000818,9.07e-18,2;CL:0000954,9.07e-18,2;CL:0000816,9.07e-18,2;CL:0000945,3.94e-13,24;CL:0000826,3.94e-13,24;CL:0000817,2.59e-12,3;CL:0000838,1.06e-10,52;CL:0000542,1.65e-10,53;CL:0000051,1.65e-10,53|ontology_enrichment_development_v019=CL:0000954;1.07e-17;2!CL:0000051;6.81e-08;53|ontology_enrichment_disease=DOID:0060058!8.89e-21!10;DOID:2531!9.55e-12!51;DOID:0060083!9.55e-12!51;DOID:2355!2.66e-07!1;DOID:12603!3.17e-07!1;DOID:0060073!3.78e-07!1;DOID:8675!3.78e-07!1|ontology_enrichment_disease_v019=DOID:2355;7.05e-34;1!DOID:0060058;2.16e-30;10!DOID:74;1.07e-17;2!DOID:2531;2.78e-10;51!DOID:0060083;2.78e-10;51!DOID:1287;1.57e-09;4|ontology_enrichment_disease_v019_2=DOID:2355,7.06e-34,1;DOID:0060058,2.06e-30,10;DOID:74,1.07e-17,2;DOID:2531,1.24e-16,51;DOID:0060083,1.24e-16,51;DOID:1287,1.57e-09,4|ontology_enrichment_uberon=UBERON:0001049!3.24e-09!57;UBERON:0005068!3.24e-09!57;UBERON:0006241!3.24e-09!57;UBERON:0007135!3.24e-09!57;UBERON:0002780!5.47e-09!41;UBERON:0001890!5.47e-09!41;UBERON:0006240!5.47e-09!41;UBERON:0002616!7.65e-09!59;UBERON:0003080!9.56e-09!42;UBERON:0000200!9.71e-09!6;UBERON:0001950!1.03e-08!20;UBERON:0001893!1.05e-08!34;UBERON:0002619!6.56e-08!22;UBERON:0001869!3.43e-07!32;UBERON:0000955!3.58e-07!69;UBERON:0006238!3.58e-07!69;UBERON:0003056!5.32e-07!61;UBERON:0007190!6.02e-07!1;UBERON:0000956!6.19e-07!25;UBERON:0000203!6.19e-07!25;UBERON:0002791!6.73e-07!33|ontology_enrichment_uberon_v019=UBERON:0002106;1.85e-12;3!UBERON:0004177;5.35e-08;5!UBERON:0005057;5.35e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.85e-12,3;UBERON:0004854,1.85e-12,3;UBERON:0009034,1.85e-12,3;UBERON:0002095,1.85e-12,3;UBERON:0004782,1.85e-12,3;UBERON:0003281,1.85e-12,3;UBERON:0009664,1.85e-12,3;UBERON:0002296,1.85e-12,3;UBERON:0005602,1.85e-12,3;UBERON:0001179,1.85e-12,3;UBERON:0006293,1.85e-12,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.246301768349837,0.393553906568396,0,0,0,0,0,0,2.55641761914995,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,0,0.284567373393656,0,0,0.191505370132367,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52411997718412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,1.61327582578091,0,0.135939465953663,0.0657727735628491,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.59493940954389,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@CHRNA6}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8973 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15963 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-55bp_to_ENST00000529467_5end | |||
|coexpression_cluster_id=C74 | |||
|description=CAGE_peak_2_at_CHRNA6_5end | |||
|id=chr8:42623846..42623865,- | |||
|ontology_enrichment_celltype=CL:0000542!3.04e-21!53;CL:0000051!3.04e-21!53;CL:0000838!9.70e-19!52;CL:0000945!4.59e-18!24;CL:0000826!4.59e-18!24;CL:0000785!8.36e-13!2;CL:0000955!8.36e-13!2;CL:0000818!8.36e-13!2;CL:0000954!8.36e-13!2;CL:0000816!8.36e-13!2;CL:0000817!8.09e-09!3;CL:0002087!1.26e-07!119;CL:0000946!2.50e-07!1;CL:0000786!2.50e-07!1;CL:0000980!2.50e-07!1;CL:0000819!3.78e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000946;7.05e-34;1!CL:0000786;7.05e-34;1!CL:0000945;4.19e-13;24!CL:0000542;6.81e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000946,5.05e-34,1;CL:0000786,5.05e-34,1;CL:0000980,5.05e-34,1;CL:0000785,9.07e-18,2;CL:0000955,9.07e-18,2;CL:0000818,9.07e-18,2;CL:0000954,9.07e-18,2;CL:0000816,9.07e-18,2;CL:0000945,3.94e-13,24;CL:0000826,3.94e-13,24;CL:0000817,2.59e-12,3;CL:0000838,1.06e-10,52;CL:0000542,1.65e-10,53;CL:0000051,1.65e-10,53 | |||
|ontology_enrichment_development_v019=CL:0000954;1.07e-17;2!CL:0000051;6.81e-08;53 | |||
|ontology_enrichment_disease=DOID:0060058!8.89e-21!10;DOID:2531!9.55e-12!51;DOID:0060083!9.55e-12!51;DOID:2355!2.66e-07!1;DOID:12603!3.17e-07!1;DOID:0060073!3.78e-07!1;DOID:8675!3.78e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:2355;7.05e-34;1!DOID:0060058;2.16e-30;10!DOID:74;1.07e-17;2!DOID:2531;2.78e-10;51!DOID:0060083;2.78e-10;51!DOID:1287;1.57e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2355,7.06e-34,1;DOID:0060058,2.06e-30,10;DOID:74,1.07e-17,2;DOID:2531,1.24e-16,51;DOID:0060083,1.24e-16,51;DOID:1287,1.57e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.24e-09!57;UBERON:0005068!3.24e-09!57;UBERON:0006241!3.24e-09!57;UBERON:0007135!3.24e-09!57;UBERON:0002780!5.47e-09!41;UBERON:0001890!5.47e-09!41;UBERON:0006240!5.47e-09!41;UBERON:0002616!7.65e-09!59;UBERON:0003080!9.56e-09!42;UBERON:0000200!9.71e-09!6;UBERON:0001950!1.03e-08!20;UBERON:0001893!1.05e-08!34;UBERON:0002619!6.56e-08!22;UBERON:0001869!3.43e-07!32;UBERON:0000955!3.58e-07!69;UBERON:0006238!3.58e-07!69;UBERON:0003056!5.32e-07!61;UBERON:0007190!6.02e-07!1;UBERON:0000956!6.19e-07!25;UBERON:0000203!6.19e-07!25;UBERON:0002791!6.73e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.85e-12;3!UBERON:0004177;5.35e-08;5!UBERON:0005057;5.35e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.85e-12,3;UBERON:0004854,1.85e-12,3;UBERON:0009034,1.85e-12,3;UBERON:0002095,1.85e-12,3;UBERON:0004782,1.85e-12,3;UBERON:0003281,1.85e-12,3;UBERON:0009664,1.85e-12,3;UBERON:0002296,1.85e-12,3;UBERON:0005602,1.85e-12,3;UBERON:0001179,1.85e-12,3;UBERON:0006293,1.85e-12,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.246301768349837,0.393553906568396,0,0,0,0,0,0,2.55641761914995,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,0,0.284567373393656,0,0,0.191505370132367,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52411997718412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,1.61327582578091,0,0.135939465953663,0.0657727735628491,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.59493940954389,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@CHRNA6 | |||
}} |
Revision as of 05:22, 14 September 2013
Short description: | p2@CHRNA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CHRNA6_5end |
Coexpression cluster: | C74_splenic_B_b_plasma_xeroderma_lymphoma_hairy |
Association with transcript: | -55bp_to_ENST00000529467_5end |
EntrezGene: | CHRNA6 |
HGNC: | 15963 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 5.05e-34 | 1 |
plasma cell | 5.05e-34 | 1 |
plasmablast | 5.05e-34 | 1 |
mature B cell | 9.07e-18 | 2 |
pre-B-II cell | 9.07e-18 | 2 |
transitional stage B cell | 9.07e-18 | 2 |
small pre-B-II cell | 9.07e-18 | 2 |
immature B cell | 9.07e-18 | 2 |
lymphocyte of B lineage | 3.94e-13 | 24 |
pro-B cell | 3.94e-13 | 24 |
precursor B cell | 2.59e-12 | 3 |
lymphoid lineage restricted progenitor cell | 1.06e-10 | 52 |
lymphocyte | 1.65e-10 | 53 |
common lymphoid progenitor | 1.65e-10 | 53 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.85e-12 | 3 |
gastrointestinal system mesentery | 1.85e-12 | 3 |
stomach region | 1.85e-12 | 3 |
mesentery | 1.85e-12 | 3 |
gastrointestinal system serosa | 1.85e-12 | 3 |
mesentery of stomach | 1.85e-12 | 3 |
gut mesentery | 1.85e-12 | 3 |
dorsal mesentery | 1.85e-12 | 3 |
dorsal mesogastrium | 1.85e-12 | 3 |
peritoneal cavity | 1.85e-12 | 3 |
spleen primordium | 1.85e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
anemia | 7.06e-34 | 1 |
lymphoma | 2.06e-30 | 10 |
hematopoietic system disease | 1.07e-17 | 2 |
hematologic cancer | 1.24e-16 | 51 |
immune system cancer | 1.24e-16 | 51 |
cardiovascular system disease | 1.57e-09 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.