FFCP PHASE1:Mm9::chr5:125638808..125638814,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=88|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:125638808..125638814,+|id=chr5:125638808..125638814,+|ontology_enrichment_celltype=CL:0000107!1.73e-08!9|ontology_enrichment_celltype_v019_2=CL:0000239,5.72e-19,6;CL:0000677,5.72e-19,6;CL:0000584,5.72e-19,6;CL:0000075,2.62e-16,7;CL:0002563,9.47e-13,9;CL:0002251,9.47e-13,9;CL:0000791,2.47e-12,9;CL:0000789,2.47e-12,9;CL:0002420,2.47e-12,9;CL:0002419,2.47e-12,9;CL:0000790,2.47e-12,9;CL:0000084,3.86e-10,11;CL:0000827,3.86e-10,11;CL:0000838,2.58e-09,12;CL:0000542,1.29e-08,13;CL:0000051,1.29e-08,13;CL:0000815,2.54e-08,1;CL:0000792,2.54e-08,1;CL:0000625,2.98e-08,1;CL:0000624,3.77e-08,8;CL:0002076,9.70e-08,15;CL:0000107,2.53e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002410!1.73e-08!9|ontology_enrichment_uberon_v019_2=UBERON:0000013,8.52e-21,3;UBERON:0003350,9.47e-13,9;UBERON:0004808,9.47e-13,9;UBERON:0001277,9.47e-13,9;UBERON:0000485,1.77e-10,11;UBERON:0001242,6.70e-09,13;UBERON:0001262,6.70e-09,13;UBERON:0004786,6.70e-09,13;UBERON:0000344,9.70e-08,15;UBERON:0002410,2.53e-07,9|phase1_expression=0.160148847104794,1.74487703819681,1.81999695755814,7.56160528267075,4.50806156951712,0,0.233612640595526,2.1950964985068,1.267098499365,0.936258105287974,0,0,1.02720437958723,0.699363219351979,0,0.202475267389826,0,0.157731082679119,0.411343300817216,0,0,0,0,0,0,0,0,0.215471232685889,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838913030288682,0.725362142011344,2.01656279485478,0,0,0,0,0.528990979272033,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122490799214954,0,0,0,0.127687338085188,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0.359445373517761,0,0,0,0,0.125654352112864,0,0,0,0,0,0,0,0,0,0.229902104433473,0,0.30140963567143,0.0680364991513279,0.12811372028485,0,0,0,0,0,0,0,0.348252166522167,1.23469281844766,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0,0.102904612379284,0,0,0,0,0.128867461322093,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0.502670417600539,0.397912944082302,0.38992817423824,0,0.432276099749388,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0,0,0,0,0,0,0,0,0.159454768657487,0,0.345369963731791,0,0,0,0,0,0,0,0,0,0.631016438832513,0.390438744296638,0.215423397732799,0.238968797952552,0.222798674082394,0.283076530788832,3.23848561339915,1.16902343164525,1.18586333383957,0,0,0,0,0,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0.18006109403131,0.646793418913773,0.643011105094777,0.709360934569094,1.07021290561242,0.329098041204242,0.608929898229199,0,0,0,0.65954501176592,0.161464426695906,0.120625849856312,0,0.164140899745061,0.582961673259701,0,0.170870880797853,0,0.185194527369712,0,0,0,0,0,0.138199973804424,0,0,0,0,0,0,0,0,0,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0.25984164595559,0.179026695667481,0,0,0,0.100966449948148,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0,0.226730383615211,0.221985953374065,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0.170733605754134,0,0,0.183843508450014,0,0,0,0.252697211763798,0.25347929989024,0.377252682772152,0.37456602987953,0.0640251524048693,0.114870937911227,0,0.231768651889711,0.192909220463705,0,0,0,0,0.238436189947321,0,0.188218760830661,0.25384382367503,0.365855945745545,0.263069711437843,0.135804113845862,0,0.237270036248348,0.0985044823755635,0,0.154936841185966,0.578719832943424,0,0,0.214871054048298,0,0,0|short_description=p@chr5:125638808..125638814,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=88 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:125638808..125638814,+ | |||
|id=chr5:125638808..125638814,+ | |||
|ontology_enrichment_celltype=CL:0000107!1.73e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,5.72e-19,6;CL:0000677,5.72e-19,6;CL:0000584,5.72e-19,6;CL:0000075,2.62e-16,7;CL:0002563,9.47e-13,9;CL:0002251,9.47e-13,9;CL:0000791,2.47e-12,9;CL:0000789,2.47e-12,9;CL:0002420,2.47e-12,9;CL:0002419,2.47e-12,9;CL:0000790,2.47e-12,9;CL:0000084,3.86e-10,11;CL:0000827,3.86e-10,11;CL:0000838,2.58e-09,12;CL:0000542,1.29e-08,13;CL:0000051,1.29e-08,13;CL:0000815,2.54e-08,1;CL:0000792,2.54e-08,1;CL:0000625,2.98e-08,1;CL:0000624,3.77e-08,8;CL:0002076,9.70e-08,15;CL:0000107,2.53e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002410!1.73e-08!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,8.52e-21,3;UBERON:0003350,9.47e-13,9;UBERON:0004808,9.47e-13,9;UBERON:0001277,9.47e-13,9;UBERON:0000485,1.77e-10,11;UBERON:0001242,6.70e-09,13;UBERON:0001262,6.70e-09,13;UBERON:0004786,6.70e-09,13;UBERON:0000344,9.70e-08,15;UBERON:0002410,2.53e-07,9 | |||
|phase1_expression=0.160148847104794,1.74487703819681,1.81999695755814,7.56160528267075,4.50806156951712,0,0.233612640595526,2.1950964985068,1.267098499365,0.936258105287974,0,0,1.02720437958723,0.699363219351979,0,0.202475267389826,0,0.157731082679119,0.411343300817216,0,0,0,0,0,0,0,0,0.215471232685889,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838913030288682,0.725362142011344,2.01656279485478,0,0,0,0,0.528990979272033,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122490799214954,0,0,0,0.127687338085188,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0.359445373517761,0,0,0,0,0.125654352112864,0,0,0,0,0,0,0,0,0,0.229902104433473,0,0.30140963567143,0.0680364991513279,0.12811372028485,0,0,0,0,0,0,0,0.348252166522167,1.23469281844766,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0,0.102904612379284,0,0,0,0,0.128867461322093,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0.502670417600539,0.397912944082302,0.38992817423824,0,0.432276099749388,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0,0,0,0,0,0,0,0,0.159454768657487,0,0.345369963731791,0,0,0,0,0,0,0,0,0,0.631016438832513,0.390438744296638,0.215423397732799,0.238968797952552,0.222798674082394,0.283076530788832,3.23848561339915,1.16902343164525,1.18586333383957,0,0,0,0,0,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0.18006109403131,0.646793418913773,0.643011105094777,0.709360934569094,1.07021290561242,0.329098041204242,0.608929898229199,0,0,0,0.65954501176592,0.161464426695906,0.120625849856312,0,0.164140899745061,0.582961673259701,0,0.170870880797853,0,0.185194527369712,0,0,0,0,0,0.138199973804424,0,0,0,0,0,0,0,0,0,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0.25984164595559,0.179026695667481,0,0,0,0.100966449948148,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0,0.226730383615211,0.221985953374065,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0.170733605754134,0,0,0.183843508450014,0,0,0,0.252697211763798,0.25347929989024,0.377252682772152,0.37456602987953,0.0640251524048693,0.114870937911227,0,0.231768651889711,0.192909220463705,0,0,0,0,0.238436189947321,0,0.188218760830661,0.25384382367503,0.365855945745545,0.263069711437843,0.135804113845862,0,0.237270036248348,0.0985044823755635,0,0.154936841185966,0.578719832943424,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr5:125638808..125638814,+ | |||
}} |
Revision as of 06:29, 14 September 2013
Short description: | p@chr5:125638808..125638814, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:125638808..125638814, + |
Coexpression cluster: | MCL_coexpression_mm9:88 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 5.72e-19 | 6 |
gut absorptive cell | 5.72e-19 | 6 |
enterocyte | 5.72e-19 | 6 |
columnar/cuboidal epithelial cell | 2.62e-16 | 7 |
intestinal epithelial cell | 9.47e-13 | 9 |
epithelial cell of alimentary canal | 9.47e-13 | 9 |
mature alpha-beta T cell | 2.47e-12 | 9 |
alpha-beta T cell | 2.47e-12 | 9 |
immature T cell | 2.47e-12 | 9 |
mature T cell | 2.47e-12 | 9 |
immature alpha-beta T cell | 2.47e-12 | 9 |
T cell | 3.86e-10 | 11 |
pro-T cell | 3.86e-10 | 11 |
lymphoid lineage restricted progenitor cell | 2.58e-09 | 12 |
lymphocyte | 1.29e-08 | 13 |
common lymphoid progenitor | 1.29e-08 | 13 |
regulatory T cell | 2.54e-08 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.54e-08 | 1 |
CD8-positive, alpha-beta T cell | 2.98e-08 | 1 |
CD4-positive, alpha-beta T cell | 3.77e-08 | 8 |
endo-epithelial cell | 9.70e-08 | 15 |
autonomic neuron | 2.53e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 8.52e-21 | 3 |
epithelium of mucosa | 9.47e-13 | 9 |
gastrointestinal system epithelium | 9.47e-13 | 9 |
intestinal epithelium | 9.47e-13 | 9 |
simple columnar epithelium | 1.77e-10 | 11 |
intestinal mucosa | 6.70e-09 | 13 |
wall of intestine | 6.70e-09 | 13 |
gastrointestinal system mucosa | 6.70e-09 | 13 |
mucosa | 9.70e-08 | 15 |
autonomic nervous system | 2.53e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.