FFCP PHASE1:Mm9::chr6:78321164..78321177,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=448|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:78321164..78321177,+|id=chr6:78321164..78321177,+|ontology_enrichment_celltype=CL:0002563!2.37e-13!9;CL:0002251!2.37e-13!9;CL:0000239!2.32e-12!6;CL:0000677!2.32e-12!6;CL:0000212!2.32e-12!6;CL:0000584!2.32e-12!6;CL:0000075!1.84e-10!7;CL:0000066!9.25e-08!25;CL:0002076!2.21e-07!15;CL:0000473!2.45e-07!3;CL:0000627!2.45e-07!3;CL:0000682!2.45e-07!3|ontology_enrichment_celltype_v019_2=CL:0000239,1.65e-20,6;CL:0000677,1.65e-20,6;CL:0000584,1.65e-20,6;CL:0000075,1.65e-17,7;CL:0002563,1.69e-13,9;CL:0002251,1.69e-13,9;CL:0000682,1.06e-11,3;CL:0000066,4.24e-10,25;CL:0002076,7.16e-08,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.61e-24!15;UBERON:0000160!1.29e-23!43;UBERON:0001242!5.43e-21!13;UBERON:0000060!5.43e-21!13;UBERON:0001262!5.43e-21!13;UBERON:0004786!5.43e-21!13;UBERON:0005409!1.00e-16!59;UBERON:0004923!6.42e-14!24;UBERON:0003350!2.37e-13!9;UBERON:0004808!2.37e-13!9;UBERON:0001277!2.37e-13!9;UBERON:0000485!1.24e-10!11;UBERON:0001007!5.53e-08!128;UBERON:0001555!5.53e-08!128;UBERON:0007026!5.53e-08!128;UBERON:0004119!9.63e-08!130;UBERON:0000925!9.63e-08!130;UBERON:0006595!9.63e-08!130;UBERON:0000331!1.15e-07!3;UBERON:0002116!1.15e-07!3;UBERON:0001204!1.15e-07!3;UBERON:0001168!1.15e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000344,7.84e-32,15;UBERON:0000160,2.17e-29,31;UBERON:0001242,7.15e-26,13;UBERON:0001262,7.15e-26,13;UBERON:0004786,7.15e-26,13;UBERON:0004923,4.68e-19,24;UBERON:0005409,2.88e-18,47;UBERON:0002108,5.44e-15,4;UBERON:0003350,1.69e-13,9;UBERON:0004808,1.69e-13,9;UBERON:0001277,1.69e-13,9;UBERON:0000331,2.82e-12,3;UBERON:0002116,2.82e-12,3;UBERON:0001204,2.82e-12,3;UBERON:0001168,2.82e-12,3;UBERON:0000485,6.07e-11,11;UBERON:0001962,1.12e-07,2;UBERON:0001961,1.12e-07,2;UBERON:0001744,1.12e-07,2;UBERON:0001007,3.17e-07,116;UBERON:0001555,3.17e-07,116;UBERON:0007026,3.17e-07,116;UBERON:0004119,4.85e-07,118;UBERON:0000925,4.85e-07,118;UBERON:0006595,4.85e-07,118|phase1_expression=0,12.9120900826564,15.4699741392442,6.95667686005709,14.5259761684441,1.17515490338323,3.73780224952841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35984087866154,5.73523202667925,24.6919744569459,15.5074318617267,11.8509177977239,83.9903513997173,41.0809111508687,81.5968279211521,0,0,0,0.288851619751275,0.498703936075477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528990979272033,0,0,0,0,0,0,0,0,0,0,0,0,0.441737081903227,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0.711858403995515,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,2.51204535381932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.96282515313506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65209391491899,14.0158800331678,0,0,0,0,0,0,9.01605216934572,0.494096864172033,0.502670417600539,0,0.19496408711912,6.29173586057955,2.59365659849633,1.59313018603494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,1.26414703174326,26.3546521437497,0,0,0,0,0,0,0,1.15184314421485,0,0,0,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0.0762068066549998,0,0.0974578807397524,0.192423683280659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0,0.206035057238894,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0.182927972872773,0.263069711437843,0,0,0,0.0985044823755635,0,0,0.192906610981141,0,0,0,0,0,0|short_description=p@chr6:78321164..78321177,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=448 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:78321164..78321177,+ | |||
|id=chr6:78321164..78321177,+ | |||
|ontology_enrichment_celltype=CL:0002563!2.37e-13!9;CL:0002251!2.37e-13!9;CL:0000239!2.32e-12!6;CL:0000677!2.32e-12!6;CL:0000212!2.32e-12!6;CL:0000584!2.32e-12!6;CL:0000075!1.84e-10!7;CL:0000066!9.25e-08!25;CL:0002076!2.21e-07!15;CL:0000473!2.45e-07!3;CL:0000627!2.45e-07!3;CL:0000682!2.45e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.65e-20,6;CL:0000677,1.65e-20,6;CL:0000584,1.65e-20,6;CL:0000075,1.65e-17,7;CL:0002563,1.69e-13,9;CL:0002251,1.69e-13,9;CL:0000682,1.06e-11,3;CL:0000066,4.24e-10,25;CL:0002076,7.16e-08,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.61e-24!15;UBERON:0000160!1.29e-23!43;UBERON:0001242!5.43e-21!13;UBERON:0000060!5.43e-21!13;UBERON:0001262!5.43e-21!13;UBERON:0004786!5.43e-21!13;UBERON:0005409!1.00e-16!59;UBERON:0004923!6.42e-14!24;UBERON:0003350!2.37e-13!9;UBERON:0004808!2.37e-13!9;UBERON:0001277!2.37e-13!9;UBERON:0000485!1.24e-10!11;UBERON:0001007!5.53e-08!128;UBERON:0001555!5.53e-08!128;UBERON:0007026!5.53e-08!128;UBERON:0004119!9.63e-08!130;UBERON:0000925!9.63e-08!130;UBERON:0006595!9.63e-08!130;UBERON:0000331!1.15e-07!3;UBERON:0002116!1.15e-07!3;UBERON:0001204!1.15e-07!3;UBERON:0001168!1.15e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,7.84e-32,15;UBERON:0000160,2.17e-29,31;UBERON:0001242,7.15e-26,13;UBERON:0001262,7.15e-26,13;UBERON:0004786,7.15e-26,13;UBERON:0004923,4.68e-19,24;UBERON:0005409,2.88e-18,47;UBERON:0002108,5.44e-15,4;UBERON:0003350,1.69e-13,9;UBERON:0004808,1.69e-13,9;UBERON:0001277,1.69e-13,9;UBERON:0000331,2.82e-12,3;UBERON:0002116,2.82e-12,3;UBERON:0001204,2.82e-12,3;UBERON:0001168,2.82e-12,3;UBERON:0000485,6.07e-11,11;UBERON:0001962,1.12e-07,2;UBERON:0001961,1.12e-07,2;UBERON:0001744,1.12e-07,2;UBERON:0001007,3.17e-07,116;UBERON:0001555,3.17e-07,116;UBERON:0007026,3.17e-07,116;UBERON:0004119,4.85e-07,118;UBERON:0000925,4.85e-07,118;UBERON:0006595,4.85e-07,118 | |||
|phase1_expression=0,12.9120900826564,15.4699741392442,6.95667686005709,14.5259761684441,1.17515490338323,3.73780224952841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35984087866154,5.73523202667925,24.6919744569459,15.5074318617267,11.8509177977239,83.9903513997173,41.0809111508687,81.5968279211521,0,0,0,0.288851619751275,0.498703936075477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528990979272033,0,0,0,0,0,0,0,0,0,0,0,0,0.441737081903227,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0.711858403995515,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,2.51204535381932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.96282515313506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65209391491899,14.0158800331678,0,0,0,0,0,0,9.01605216934572,0.494096864172033,0.502670417600539,0,0.19496408711912,6.29173586057955,2.59365659849633,1.59313018603494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,1.26414703174326,26.3546521437497,0,0,0,0,0,0,0,1.15184314421485,0,0,0,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0.0762068066549998,0,0.0974578807397524,0.192423683280659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0,0.206035057238894,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0.182927972872773,0.263069711437843,0,0,0,0.0985044823755635,0,0,0.192906610981141,0,0,0,0,0,0 | |||
|short_description=p@chr6:78321164..78321177,+ | |||
}} |
Revision as of 10:39, 14 September 2013
Short description: | p@chr6:78321164..78321177, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:78321164..78321177, + |
Coexpression cluster: | MCL_coexpression_mm9:448 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.65e-20 | 6 |
gut absorptive cell | 1.65e-20 | 6 |
enterocyte | 1.65e-20 | 6 |
columnar/cuboidal epithelial cell | 1.65e-17 | 7 |
intestinal epithelial cell | 1.69e-13 | 9 |
epithelial cell of alimentary canal | 1.69e-13 | 9 |
M cell of gut | 1.06e-11 | 3 |
epithelial cell | 4.24e-10 | 25 |
endo-epithelial cell | 7.16e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 7.84e-32 | 15 |
intestine | 2.17e-29 | 31 |
intestinal mucosa | 7.15e-26 | 13 |
wall of intestine | 7.15e-26 | 13 |
gastrointestinal system mucosa | 7.15e-26 | 13 |
organ component layer | 4.68e-19 | 24 |
gastrointestinal system | 2.88e-18 | 47 |
small intestine | 5.44e-15 | 4 |
epithelium of mucosa | 1.69e-13 | 9 |
gastrointestinal system epithelium | 1.69e-13 | 9 |
intestinal epithelium | 1.69e-13 | 9 |
ileal mucosa | 2.82e-12 | 3 |
ileum | 2.82e-12 | 3 |
mucosa of small intestine | 2.82e-12 | 3 |
wall of small intestine | 2.82e-12 | 3 |
simple columnar epithelium | 6.07e-11 | 11 |
gut-associated lymphoid tissue | 1.12e-07 | 2 |
mucosa-associated lymphoid tissue | 1.12e-07 | 2 |
lymphoid tissue | 1.12e-07 | 2 |
digestive system | 3.17e-07 | 116 |
digestive tract | 3.17e-07 | 116 |
primitive gut | 3.17e-07 | 116 |
endoderm-derived structure | 4.85e-07 | 118 |
endoderm | 4.85e-07 | 118 |
presumptive endoderm | 4.85e-07 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.