FFCP PHASE1:Mm9::chr7:105851749..105851802,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72981|HGNC=|UniProt=D6RH75|association_with_transcript=-35bp_to_ENSMUST00000153566_5end|description=CAGE_peak_1_at_Prkrir_5end|id=chr7:105851749..105851802,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!1.47e-08!94;UBERON:0004121!3.95e-08!102;UBERON:0000924!3.95e-08!102;UBERON:0006601!3.95e-08!102;UBERON:0000033!5.77e-08!63;UBERON:0002020!8.13e-08!34;UBERON:0007811!1.63e-07!86;UBERON:0003056!6.19e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0010314,8.92e-10,92;UBERON:0004121,1.02e-09,95;UBERON:0000924,1.02e-09,95;UBERON:0006601,1.02e-09,95;UBERON:0010371,1.76e-09,73;UBERON:0002346,4.90e-08,64;UBERON:0003075,4.90e-08,64;UBERON:0007284,4.90e-08,64;UBERON:0002020,8.13e-08,34;UBERON:0003056,6.19e-07,49|phase1_expression=49.9664402966957,3.14077866875425,3.63999391511629,4.53696316960245,3.00537437967808,12.5909453933917,8.64366770203445,24.6625547773411,85.8811205125167,70.687486949242,37.3255170731601,43.4758266524583,32.5281386869291,24.6525534821573,20.3196954707554,12.5534665781692,10.4934281719222,24.4483178152634,28.6569166235994,16.1268067683251,24.7475974339613,18.7659897769673,20.373583552837,11.0394771727451,13.0763290208287,2.8711598205751,9.47676391549965,7.75696437669201,14.251756459228,20.9185007700743,14.1907526819395,8.25539875497521,11.0711661765223,0,23.9746844393558,34.0781022984909,27.5628630954198,2.09265815368454,2.3440060335714,2.61761871986899,1.17646297606203,1.36609096991689,1.94204141212461,25.1793635951155,26.9662637043909,34.1396959020728,27.3836970521814,22.0205407944251,23.5064215525885,33.636372539851,42.8358450173609,17.2503077237966,26.3418691510646,36.9934692425786,31.2567233202492,33.4437266846731,38.6820143917322,26.814948798427,37.6308617198852,34.3844136526821,42.466704034914,26.7687180334614,29.3467282716676,9.44894703145469,4.94433181283487,6.3943210345149,11.3848041996994,19.5951335713993,37.6393292679774,34.5615202129128,42.0649922702764,47.7037143954352,42.848496944613,42.9942705244489,41.9803163059875,59.7492211296514,35.2370819198044,44.179818977475,41.012944379417,41.5441806350111,40.3460508286627,52.6122504262328,29.8725808931478,25.3243174514256,34.3796057497823,52.4438882143128,57.0910440004403,50.7006492644818,23.5508461266202,39.1460681353149,33.3344162006929,12.0459342777394,23.1190253460635,15.6513925574967,24.6915038630114,27.3296401129375,42.1333260395256,39.0285438703752,37.1493986582102,49.4675404314476,34.0841075859567,52.6138557398703,145.238986632788,149.3240076622,24.4634876342672,25.8427062784601,21.7375511356357,29.6878087269556,23.0454716445983,32.0635020380021,21.8591511725331,19.485790611977,18.4492397804847,16.8809357418937,30.5730638552832,30.2856485104518,11.3709685157812,44.1028038605731,22.9998743506967,37.6916760377463,33.7887523244402,36.3656439851417,14.9113408974498,36.5975996264434,36.4437269855412,15.5828803677241,24.2026551501959,19.196887391789,18.0439722443752,30.1079185203694,36.1425476226715,58.6805824367077,37.0245802009549,31.4530012516307,29.7136903720171,29.5279098783319,50.6141638336072,28.9868241521517,23.2504937758981,54.9253243863697,37.6048080162214,28.5078609497506,46.2759673599748,40.2381863621359,57.5588782820234,51.2454881139399,51.9107554060898,51.2232674063251,37.5088307703145,37.2538977930604,45.0434877859709,44.2775379503701,38.0924731439069,35.1734688187388,33.3367060980868,29.6561057559555,16.8531164955176,16.4702660553418,13.3556844715929,31.0688658803253,27.2050229578072,26.2890609733082,32.9075182463442,34.6305047875431,28.8479501099397,35.1126256573116,35.1438155833501,46.0055448926648,53.3173913719677,59.1002870684743,77.9071259735674,58.9185949324089,59.2785311285837,56.0982830418354,43.3197294042102,72.341942502637,7.26921322564356,22.2138475997377,32.846390582426,33.6743174197636,30.5415883333361,26.4205417256579,23.7944506914011,19.403013863481,17.0830462156024,33.2691888542502,23.6255096272253,26.6601672535142,23.2007263671753,20.6728463990471,16.8587678902262,14.5373129475688,44.3822888230211,35.4170389090159,25.9227792048085,35.2316797172394,38.7904974335251,40.5385038966041,41.29345874214,27.6030976721856,29.3587621063371,28.9983335216231,13.6368208460088,13.5144535630036,15.528160613943,9.44420872016386,12.3744674046987,9.16473207059184,12.2220408855082,16.3986798346962,25.7795010572306,19.7684217495419,43.1304619582064,27.5384301274693,27.4593152340813,23.7424145270285,21.5276896226295,22.1924019827149,49.8833613449833,32.2135400009824,35.8522948172457,43.4547419584482,36.3769884847178,28.4760637651087,28.3271932654356,45.0758726551515,43.5072997733087,57.5808193086815,47.0391567539587,34.7390227197365,27.9749670622751,34.5711250009813,3.01582567878545,5.98296252200581,12.2941068254759,44.7017529013667,28.0963532478636,26.8414762296145,28.6886154409182,92.4043593568005,33.7593794775395,32.7968545209176,32.7443564553854,31.0659437338318,26.9586395639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| ||
|EntrezGene=72981 | |||
|HGNC= | |||
|UniProt=D6RH75 | |||
|association_with_transcript=-35bp_to_ENSMUST00000153566_5end | |||
|description=CAGE_peak_1_at_Prkrir_5end | |||
|id=chr7:105851749..105851802,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.47e-08!94;UBERON:0004121!3.95e-08!102;UBERON:0000924!3.95e-08!102;UBERON:0006601!3.95e-08!102;UBERON:0000033!5.77e-08!63;UBERON:0002020!8.13e-08!34;UBERON:0007811!1.63e-07!86;UBERON:0003056!6.19e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,8.92e-10,92;UBERON:0004121,1.02e-09,95;UBERON:0000924,1.02e-09,95;UBERON:0006601,1.02e-09,95;UBERON:0010371,1.76e-09,73;UBERON:0002346,4.90e-08,64;UBERON:0003075,4.90e-08,64;UBERON:0007284,4.90e-08,64;UBERON:0002020,8.13e-08,34;UBERON:0003056,6.19e-07,49 | |||
|phase1_expression=49.9664402966957,3.14077866875425,3.63999391511629,4.53696316960245,3.00537437967808,12.5909453933917,8.64366770203445,24.6625547773411,85.8811205125167,70.687486949242,37.3255170731601,43.4758266524583,32.5281386869291,24.6525534821573,20.3196954707554,12.5534665781692,10.4934281719222,24.4483178152634,28.6569166235994,16.1268067683251,24.7475974339613,18.7659897769673,20.373583552837,11.0394771727451,13.0763290208287,2.8711598205751,9.47676391549965,7.75696437669201,14.251756459228,20.9185007700743,14.1907526819395,8.25539875497521,11.0711661765223,0,23.9746844393558,34.0781022984909,27.5628630954198,2.09265815368454,2.3440060335714,2.61761871986899,1.17646297606203,1.36609096991689,1.94204141212461,25.1793635951155,26.9662637043909,34.1396959020728,27.3836970521814,22.0205407944251,23.5064215525885,33.636372539851,42.8358450173609,17.2503077237966,26.3418691510646,36.9934692425786,31.2567233202492,33.4437266846731,38.6820143917322,26.814948798427,37.6308617198852,34.3844136526821,42.466704034914,26.7687180334614,29.3467282716676,9.44894703145469,4.94433181283487,6.3943210345149,11.3848041996994,19.5951335713993,37.6393292679774,34.5615202129128,42.0649922702764,47.7037143954352,42.848496944613,42.9942705244489,41.9803163059875,59.7492211296514,35.2370819198044,44.179818977475,41.012944379417,41.5441806350111,40.3460508286627,52.6122504262328,29.8725808931478,25.3243174514256,34.3796057497823,52.4438882143128,57.0910440004403,50.7006492644818,23.5508461266202,39.1460681353149,33.3344162006929,12.0459342777394,23.1190253460635,15.6513925574967,24.6915038630114,27.3296401129375,42.1333260395256,39.0285438703752,37.1493986582102,49.4675404314476,34.0841075859567,52.6138557398703,145.238986632788,149.3240076622,24.4634876342672,25.8427062784601,21.7375511356357,29.6878087269556,23.0454716445983,32.0635020380021,21.8591511725331,19.485790611977,18.4492397804847,16.8809357418937,30.5730638552832,30.2856485104518,11.3709685157812,44.1028038605731,22.9998743506967,37.6916760377463,33.7887523244402,36.3656439851417,14.9113408974498,36.5975996264434,36.4437269855412,15.5828803677241,24.2026551501959,19.196887391789,18.0439722443752,30.1079185203694,36.1425476226715,58.6805824367077,37.0245802009549,31.4530012516307,29.7136903720171,29.5279098783319,50.6141638336072,28.9868241521517,23.2504937758981,54.9253243863697,37.6048080162214,28.5078609497506,46.2759673599748,40.2381863621359,57.5588782820234,51.2454881139399,51.9107554060898,51.2232674063251,37.5088307703145,37.2538977930604,45.0434877859709,44.2775379503701,38.0924731439069,35.1734688187388,33.3367060980868,29.6561057559555,16.8531164955176,16.4702660553418,13.3556844715929,31.0688658803253,27.2050229578072,26.2890609733082,32.9075182463442,34.6305047875431,28.8479501099397,35.1126256573116,35.1438155833501,46.0055448926648,53.3173913719677,59.1002870684743,77.9071259735674,58.9185949324089,59.2785311285837,56.0982830418354,43.3197294042102,72.341942502637,7.26921322564356,22.2138475997377,32.846390582426,33.6743174197636,30.5415883333361,26.4205417256579,23.7944506914011,19.403013863481,17.0830462156024,33.2691888542502,23.6255096272253,26.6601672535142,23.2007263671753,20.6728463990471,16.8587678902262,14.5373129475688,44.3822888230211,35.4170389090159,25.9227792048085,35.2316797172394,38.7904974335251,40.5385038966041,41.29345874214,27.6030976721856,29.3587621063371,28.9983335216231,13.6368208460088,13.5144535630036,15.528160613943,9.44420872016386,12.3744674046987,9.16473207059184,12.2220408855082,16.3986798346962,25.7795010572306,19.7684217495419,43.1304619582064,27.5384301274693,27.4593152340813,23.7424145270285,21.5276896226295,22.1924019827149,49.8833613449833,32.2135400009824,35.8522948172457,43.4547419584482,36.3769884847178,28.4760637651087,28.3271932654356,45.0758726551515,43.5072997733087,57.5808193086815,47.0391567539587,34.7390227197365,27.9749670622751,34.5711250009813,3.01582567878545,5.98296252200581,12.2941068254759,44.7017529013667,28.0963532478636,26.8414762296145,28.6886154409182,92.4043593568005,33.7593794775395,32.7968545209176,32.7443564553854,31.0659437338318,26.9586395639697,44.4430153338467,35.2185310457158,27.179794785752,32.0183100136684,42.0930924512567,31.6526390014439,28.8466277940953,50.4949573996086,37.4482179147656,38.4960901185892,25.734747432428,17.5347663039556,18.8605079755898,19.1946230372502,26.1319875752338,28.1686839553361,35.6263054887955,33.1542561897791,30.6555655197742,27.4088382294997,46.4109944616841,16.000661470428,39.4333795928569,30.5286493727301,35.5799478152443,27.1330557472679,35.1386570676079,28.9606276259733,23.4438010818241,13.1416156515678,13.7690846061483,37.9308844654535,64.8002974060017,44.402717341374,40.650911401577,34.3792350729033,34.4695889464629,26.2332752966866,31.7077266437972,12.9861869406368,27.862227175035,21.2973706475168,13.3741604473331,13.3960343166605,14.6418030852174,27.1965487990168,26.4508244891714,27.3635948132759,35.3228128665592,40.1746711848042,33.344392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| |||
|short_description=p1@Prkrir | |||
}} | |||
Revision as of 11:11, 14 September 2013
| Short description: | p1@Prkrir |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Prkrir_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -35bp_to_ENSMUST00000153566_5end |
| EntrezGene: | Prkrir |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| structure with developmental contribution from neural crest | 8.92e-10 | 92 |
| ectoderm-derived structure | 1.02e-09 | 95 |
| ectoderm | 1.02e-09 | 95 |
| presumptive ectoderm | 1.02e-09 | 95 |
| ecto-epithelium | 1.76e-09 | 73 |
| neurectoderm | 4.90e-08 | 64 |
| neural plate | 4.90e-08 | 64 |
| presumptive neural plate | 4.90e-08 | 64 |
| gray matter | 8.13e-08 | 34 |
| pre-chordal neural plate | 6.19e-07 | 49 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
