FFCP PHASE1:Mm9::chr7:31844692..31844718,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=243914|HGNC=|MCL_coexpression_id=107|UniProt=Q4KMN2|association_with_transcript=-76bp_to_ENSMUST00000088438_5end|description=CAGE_peak_5_at_Lgi4_5end|id=chr7:31844692..31844718,+|ontology_enrichment_celltype=CL:0000107!2.99e-09!9;CL:0000221!7.61e-08!44;CL:0000133!7.61e-08!44;CL:0002319!2.94e-07!43|ontology_enrichment_celltype_v019_2=CL:0000107,1.51e-34,9;CL:0000221,6.97e-15,44;CL:0000133,6.97e-15,44;CL:0002319,5.03e-13,43;CL:0000540,3.05e-10,33;CL:0000047,3.05e-10,33;CL:0000031,3.05e-10,33;CL:0000404,3.05e-10,33;CL:0000217,5.73e-09,2;CL:0000328,5.73e-09,2;CL:0002573,5.73e-09,2;CL:0002376,5.73e-09,2;CL:0000218,5.73e-09,2;CL:0000692,5.73e-09,2;CL:0002377,5.73e-09,2;CL:0002375,5.73e-09,2;CL:0000393,2.11e-08,39;CL:0000211,2.11e-08,39;CL:0002321,2.28e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000010!5.54e-11!11;UBERON:0002410!2.99e-09!9;UBERON:0004121!4.51e-09!102;UBERON:0000924!4.51e-09!102;UBERON:0006601!4.51e-09!102|ontology_enrichment_uberon_v019_2=UBERON:0000010,5.04e-42,11;UBERON:0002410,1.51e-34,9;UBERON:0000011,5.17e-13,3;UBERON:0004121,1.25e-12,95;UBERON:0000924,1.25e-12,95;UBERON:0006601,1.25e-12,95;UBERON:0000013,1.79e-12,3;UBERON:0010313,3.02e-12,3;UBERON:0002342,3.02e-12,3;UBERON:0002005,3.02e-12,3;UBERON:0005428,3.02e-12,3;UBERON:0005062,3.02e-12,3;UBERON:0001016,6.93e-09,75;UBERON:0000165,3.83e-08,2;UBERON:0000166,3.83e-08,2;UBERON:0000930,3.83e-08,2;UBERON:0000161,5.02e-07,5;UBERON:0000033,8.51e-07,13|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0,0,0.218025156380447,0,0,0,1.43752564364972,0,0,0,0,0,0.515672092277442,0,0,0,0,0,0,0,0,0.299600110518405,0.384218305321555,0,0,0,0.285650984403804,0.662605622854841,0,0,0,1.10115880999389,0.383062014255563,0.307213066512487,0,0,0,0.279182999001381,0.56276261003168,0.61119299110724,0.883885756421003,0.996601765593721,0.559198337475902,4.54357159999104,21.7646093107542,0.579728977403356,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,5.7745802108439,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,0,0.608930956624282,0.230615497256059,0.301445281105245,0.470354828542819,0.251333182659351,0,1.01219549843938,0,0.485300549842228,1.10420759230197,0.484875253135222,0,2.04946557908083,1.67557365450764,0,0,0,0,0,0,0,0.521472960576829,0,0,0,0.203678727700633,0.373220911830279,0,1.05220927943237,0,0,0,0.150704817835715,0.136072998302656,0.640568601424249,0.374806898238915,1.29351685369508,0,0.189106080167819,0,0,0,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0.16455984991348,0,0.405344047729279,0.584799949701329,0.219550115291051,0.536825675041487,0,0,0,0.264450566663544,0.639864751605702,0,0.128867461322093,0,0,0,0,0,0.754005626400808,0.397912944082302,0,0,0.216138049874694,0.995706366271836,0,0,0,0,0.193952487167626,0,0,0,0.156998727841375,0,0,0,0,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0.157635144106191,0,0.159454768657487,0.655453258862952,0.345369963731791,0.144649058581512,0,0,0,0.551873492609465,0.160550589987792,0.35163505977661,0,0.757412781613119,4.10160685241134,3.12350995437311,12.9254038639679,14.5770966751057,18.0466926006739,27.7415000173056,5.26253912177363,7.59865230569411,7.11518000303742,0.321321316421807,0.425820255624806,0.178065603667255,0.162886959353576,0.329940245945071,0,0,0,0,0,0,0.258428293168221,0.727067458955011,0.712994756769443,0.632073515871632,1.05418608574999,0,0,0,0,0,0,0,0.658196082408484,0,0,0,0.661585194164886,0.98931751764888,0.484393280087717,0.0603129249281559,0.238744688006273,0.328281799490123,0.291480836629851,0.556275906031529,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0.203319467126849,0,0.627264888043406,0,0.539457385539283,0.330613822901344,0.523511883968059,0.648074866458964,1.24267862617385,0,0,0,0,0,0,0.117357238645754,0.39061315453185,0,0.724752362478018,0.576060012515731,0.316011120628178,0,0,0,0,0,0,0.147689527174577,0,0.0762068066549998,0,0,0,0,1.58711268530648,0,0,0,1.35232715822533,0.563047426353546,0.36630324853453,0.857473516316263,0,0,0,0,0.343706364687375,0,0,0,0,0,0.51776031175182,0,0,0.170733605754134,0,0,0,0.222246727801615,0.206035057238894,0,0,0,0.565879024158229,0.0936415074698824,0.384150914429216,0.114870937911227,0,0.115884325944855,0,0,0.147198920134397,0,0.532427418478012,0.238436189947321,0.145346416632329,0.0941093804153306,0.0846146078916765,0,0.263069711437843,0,0,0.118635018124174,0.29551344712669,0.409231043169689,0,0.385813221962283,0.249810577937946,0.233931608445408,0,0.191288332068843,0.220591419119515,0.927471342481686|short_description=p5@Lgi4}} | ||
|EntrezGene=243914 | |||
|HGNC= | |||
|MCL_coexpression_id=107 | |||
|UniProt=Q4KMN2 | |||
|association_with_transcript=-76bp_to_ENSMUST00000088438_5end | |||
|description=CAGE_peak_5_at_Lgi4_5end | |||
|id=chr7:31844692..31844718,+ | |||
|ontology_enrichment_celltype=CL:0000107!2.99e-09!9;CL:0000221!7.61e-08!44;CL:0000133!7.61e-08!44;CL:0002319!2.94e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000107,1.51e-34,9;CL:0000221,6.97e-15,44;CL:0000133,6.97e-15,44;CL:0002319,5.03e-13,43;CL:0000540,3.05e-10,33;CL:0000047,3.05e-10,33;CL:0000031,3.05e-10,33;CL:0000404,3.05e-10,33;CL:0000217,5.73e-09,2;CL:0000328,5.73e-09,2;CL:0002573,5.73e-09,2;CL:0002376,5.73e-09,2;CL:0000218,5.73e-09,2;CL:0000692,5.73e-09,2;CL:0002377,5.73e-09,2;CL:0002375,5.73e-09,2;CL:0000393,2.11e-08,39;CL:0000211,2.11e-08,39;CL:0002321,2.28e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000010!5.54e-11!11;UBERON:0002410!2.99e-09!9;UBERON:0004121!4.51e-09!102;UBERON:0000924!4.51e-09!102;UBERON:0006601!4.51e-09!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,5.04e-42,11;UBERON:0002410,1.51e-34,9;UBERON:0000011,5.17e-13,3;UBERON:0004121,1.25e-12,95;UBERON:0000924,1.25e-12,95;UBERON:0006601,1.25e-12,95;UBERON:0000013,1.79e-12,3;UBERON:0010313,3.02e-12,3;UBERON:0002342,3.02e-12,3;UBERON:0002005,3.02e-12,3;UBERON:0005428,3.02e-12,3;UBERON:0005062,3.02e-12,3;UBERON:0001016,6.93e-09,75;UBERON:0000165,3.83e-08,2;UBERON:0000166,3.83e-08,2;UBERON:0000930,3.83e-08,2;UBERON:0000161,5.02e-07,5;UBERON:0000033,8.51e-07,13 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0,0,0.218025156380447,0,0,0,1.43752564364972,0,0,0,0,0,0.515672092277442,0,0,0,0,0,0,0,0,0.299600110518405,0.384218305321555,0,0,0,0.285650984403804,0.662605622854841,0,0,0,1.10115880999389,0.383062014255563,0.307213066512487,0,0,0,0.279182999001381,0.56276261003168,0.61119299110724,0.883885756421003,0.996601765593721,0.559198337475902,4.54357159999104,21.7646093107542,0.579728977403356,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,5.7745802108439,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,0,0.608930956624282,0.230615497256059,0.301445281105245,0.470354828542819,0.251333182659351,0,1.01219549843938,0,0.485300549842228,1.10420759230197,0.484875253135222,0,2.04946557908083,1.67557365450764,0,0,0,0,0,0,0,0.521472960576829,0,0,0,0.203678727700633,0.373220911830279,0,1.05220927943237,0,0,0,0.150704817835715,0.136072998302656,0.640568601424249,0.374806898238915,1.29351685369508,0,0.189106080167819,0,0,0,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0.16455984991348,0,0.405344047729279,0.584799949701329,0.219550115291051,0.536825675041487,0,0,0,0.264450566663544,0.639864751605702,0,0.128867461322093,0,0,0,0,0,0.754005626400808,0.397912944082302,0,0,0.216138049874694,0.995706366271836,0,0,0,0,0.193952487167626,0,0,0,0.156998727841375,0,0,0,0,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0.157635144106191,0,0.159454768657487,0.655453258862952,0.345369963731791,0.144649058581512,0,0,0,0.551873492609465,0.160550589987792,0.35163505977661,0,0.757412781613119,4.10160685241134,3.12350995437311,12.9254038639679,14.5770966751057,18.0466926006739,27.7415000173056,5.26253912177363,7.59865230569411,7.11518000303742,0.321321316421807,0.425820255624806,0.178065603667255,0.162886959353576,0.329940245945071,0,0,0,0,0,0,0.258428293168221,0.727067458955011,0.712994756769443,0.632073515871632,1.05418608574999,0,0,0,0,0,0,0,0.658196082408484,0,0,0,0.661585194164886,0.98931751764888,0.484393280087717,0.0603129249281559,0.238744688006273,0.328281799490123,0.291480836629851,0.556275906031529,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0.203319467126849,0,0.627264888043406,0,0.539457385539283,0.330613822901344,0.523511883968059,0.648074866458964,1.24267862617385,0,0,0,0,0,0,0.117357238645754,0.39061315453185,0,0.724752362478018,0.576060012515731,0.316011120628178,0,0,0,0,0,0,0.147689527174577,0,0.0762068066549998,0,0,0,0,1.58711268530648,0,0,0,1.35232715822533,0.563047426353546,0.36630324853453,0.857473516316263,0,0,0,0,0.343706364687375,0,0,0,0,0,0.51776031175182,0,0,0.170733605754134,0,0,0,0.222246727801615,0.206035057238894,0,0,0,0.565879024158229,0.0936415074698824,0.384150914429216,0.114870937911227,0,0.115884325944855,0,0,0.147198920134397,0,0.532427418478012,0.238436189947321,0.145346416632329,0.0941093804153306,0.0846146078916765,0,0.263069711437843,0,0,0.118635018124174,0.29551344712669,0.409231043169689,0,0.385813221962283,0.249810577937946,0.233931608445408,0,0.191288332068843,0.220591419119515,0.927471342481686 | |||
|short_description=p5@Lgi4 | |||
}} |
Revision as of 13:18, 14 September 2013
Short description: | p5@Lgi4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Lgi4_5end |
Coexpression cluster: | MCL_coexpression_mm9:107 |
Association with transcript: | -76bp_to_ENSMUST00000088438_5end |
EntrezGene: | Lgi4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
autonomic neuron | 1.51e-34 | 9 |
ectodermal cell | 6.97e-15 | 44 |
neurectodermal cell | 6.97e-15 | 44 |
neural cell | 5.03e-13 | 43 |
neuron | 3.05e-10 | 33 |
neuronal stem cell | 3.05e-10 | 33 |
neuroblast | 3.05e-10 | 33 |
electrically signaling cell | 3.05e-10 | 33 |
insulating cell | 5.73e-09 | 2 |
myelin accumulating cell | 5.73e-09 | 2 |
Schwann cell | 5.73e-09 | 2 |
non-myelinating Schwann cell | 5.73e-09 | 2 |
myelinating Schwann cell;;Schwann cell | 5.73e-09 | 2 |
terminal Schwann cell | 5.73e-09 | 2 |
immature Schwann cell | 5.73e-09 | 2 |
Schwann cell precursor | 5.73e-09 | 2 |
electrically responsive cell | 2.11e-08 | 39 |
electrically active cell | 2.11e-08 | 39 |
embryonic cell | 2.28e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 5.04e-42 | 11 |
autonomic nervous system | 1.51e-34 | 9 |
parasympathetic nervous system | 5.17e-13 | 3 |
ectoderm-derived structure | 1.25e-12 | 95 |
ectoderm | 1.25e-12 | 95 |
presumptive ectoderm | 1.25e-12 | 95 |
sympathetic nervous system | 1.79e-12 | 3 |
neural crest-derived structure | 3.02e-12 | 3 |
neural crest | 3.02e-12 | 3 |
enteric nervous system | 3.02e-12 | 3 |
vagal neural crest | 3.02e-12 | 3 |
neural fold | 3.02e-12 | 3 |
nervous system | 6.93e-09 | 75 |
mouth | 3.83e-08 | 2 |
oral opening | 3.83e-08 | 2 |
stomodeum | 3.83e-08 | 2 |
orifice | 5.02e-07 | 5 |
head | 8.51e-07 | 13 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.