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{{Coexpression_clusters
{{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19693744381922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|full_id=C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell|gostat_on_coexpression_clusters=GO:0030073!insulin secretion!0.0207743713648184!2645;139760$GO:0002790!peptide secretion!0.0207743713648184!2645;139760$GO:0030072!peptide hormone secretion!0.0207743713648184!2645;139760$GO:0005515!protein binding!0.036532638926643!1917;9365;2676;1113;84221;115353;79782;53904;3708;11069;2984;2645;84448;80206;2520;23373;54738$GO:0046879!hormone secretion!0.036532638926643!2645;139760$GO:0015833!peptide transport!0.036532638926643!2645;139760$GO:0060002!plus-end directed microfilament motor activity!0.036532638926643!53904$GO:0051594!detection of glucose!0.036532638926643!2645$GO:0009730!detection of carbohydrate stimulus!0.036532638926643!2645$GO:0005536!glucose binding!0.036532638926643!2645$GO:0004340!glucokinase activity!0.036532638926643!2645$GO:0046873!metal ion transmembrane transporter activity!0.036532638926643!89822;6833;3708;83795$GO:0022836!gated channel activity!0.036532638926643!89822;3708;83795;2555$GO:0006112!energy reserve metabolic process!0.0379028371044298!2645;9365$GO:0006813!potassium ion transport!0.0429179710207958!89822;6833;83795$GO:0003001!generation of a signal involved in cell-cell signaling!0.0429179710207958!2645;139760$GO:0009726!detection of endogenous stimulus!0.0429179710207958!2645$GO:0045721!negative regulation of gluconeogenesis!0.0429179710207958!2645$GO:0032024!positive regulation of insulin secretion!0.0429179710207958!2645$GO:0007267!cell-cell signaling!0.0429179710207958!2645;6753;139760;2555$GO:0035081!induction of programmed cell death by hormones!0.0429179710207958!6753$GO:0008628!induction of apoptosis by hormones!0.0429179710207958!6753$GO:0005979!regulation of glycogen biosynthetic process!0.0429179710207958!2645$GO:0008140!cAMP response element binding protein binding!0.0429179710207958!23373$GO:0045912!negative regulation of carbohydrate metabolic process!0.0429179710207958!2645$GO:0004566!beta-glucuronidase activity!0.0429179710207958!9365$GO:0045725!positive regulation of glycogen biosynthetic process!0.0429179710207958!2645$GO:0008422!beta-glucosidase activity!0.0429179710207958!9365$GO:0015079!potassium ion transmembrane transporter activity!0.0429179710207958!6833$GO:0030501!positive regulation of bone mineralization!0.0429179710207958!9365$GO:0005216!ion channel activity!0.0429179710207958!89822;3708;83795;2555$GO:0030001!metal ion transport!0.0429179710207958!89822;6833;3708;83795$GO:0007010!cytoskeleton organization and biogenesis!0.0429179710207958!113220;84448;80206;10615$GO:0022838!substrate specific channel activity!0.0429179710207958!89822;3708;83795;2555$GO:0022803!passive transmembrane transporter activity!0.0429179710207958!89822;3708;83795;2555$GO:0015267!channel activity!0.0429179710207958!89822;3708;83795;2555$GO:0006111!regulation of gluconeogenesis!0.0429179710207958!2645$GO:0005220!inositol 1,4,5-triphosphate-sensitive calcium-release channel activity!0.0429179710207958!3708$GO:0008095!inositol-1,4,5-triphosphate receptor activity!0.0429179710207958!3708$GO:0030898!actin-dependent ATPase activity!0.0429179710207958!53904$GO:0043284!biopolymer biosynthetic process!0.0429179710207958!2645;1917|id=C76|ontology_enrichment_celltype=CL:0002535!1.55e-98!2|ontology_enrichment_disease=DOID:4362!1.48e-40!5;DOID:120!8.32e-09!27;DOID:193!2.67e-08!29|ontology_enrichment_uberon=UBERON:0006955!1.55e-98!2;UBERON:0004801!1.55e-98!2;UBERON:0000002!4.27e-34!6;UBERON:0001560!4.27e-34!6;UBERON:0000995!6.74e-11!21;UBERON:0005795!1.80e-10!22;UBERON:0003975!1.80e-10!22;UBERON:0004175!2.15e-09!25;UBERON:0003134!8.21e-07!37;UBERON:0000474!8.21e-07!37|pathway_enrichment=3.1297509870497e-05;0.0198113237480246;4;125;Integration of energy metabolism 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4072,0.183309,0.0803762,0.045354,0.196879,0.0145102,0.106548,0.385141,0.536983,0.194746,0.00678127,1.17778,0.23555,0.269028,1.24852,0.109885,0.115689,0.0647713,0.0412642,1.14371,0.750158,0.325011,0.203655,0.0540704,0.058061,0.256049,0.41966,0.00407675,0.110375,0.00360258,0.655399,0.99236,1.14684,0.211028,0.230807,1.06601,0.47001,0.324929,0.169776,0.00563688,0.0654969,1.27535,0.0418317,0.0206211,0.0825363,0.938448,0.0373931,0.795946,0.179392,0.43923,0.0713814,1.16034,0.0703534,0.52425,0.0730849,0.0276041,0.428322,0.24534,0.0205009,0.392284,1.12896,0.591172,0.120925,0.0304929,0.503637,2.62504,0.263377,0.0259428,0.672899,1.18351,0.562661,0.230401,0.580298,0.187528,0.155204,0.0913769,0.210027,0.201609,0.00856303,3.32375,0.427967,0.0292569,0.746406,0.259147,0.342112,0.152286,0.0342965,0.0035671,0.787279,0.024222,0.837087,0.135555,1.14628,0.168876,0.924724,0.0907974,0.338911,0.0177504,0.00416431,0.0892474,0.253832,0.101061,0.00191631,0.0815931,0.805689,0.925367,0.212592,0.0586654,0.0752729,0.126265,0.136339,0.113468,1.19561,0.103146,0.0653132,0.0197591,0.272406,0.0988934,0.242067,1.10824,0.291506,0.565821,2.78284,1.20853,0.0937962,0.141429,0.531397,0.573884,1.51213,1.51693,0.0643629,0.064538,0.630308,0.307424,0.196199,0.400459,0.56632,0.10579,0.487689,0.0897704,0.494671,1.81967,0.0196316,1.02493,0.519621,0.343984,0.0196721,0.127064,0.135571,0.109943,0.134716,0.0388166,0.00497721,0.195137,0.057805,0.381855,0.0382272,0.354175,0.2426,0.00409338,1.14553,0.049129|tfbs_overrepresentation_jaspar=MA0003.1;0.0617061,MA0004.1;1.41945,MA0006.1;0.0576547,MA0007.1;0.420931,MA0009.1;0.0484012,MA0014.1;0.0116544,MA0017.1;1.902,MA0019.1;0.12542,MA0024.1;0.423224,MA0025.1;0.118087,MA0027.1;1.07684,MA0028.1;0.0343273,MA0029.1;0.158263,MA0030.1;0.660812,MA0031.1;0.658914,MA0038.1;0.036893,MA0040.1;1.67636,MA0041.1;1.87506,MA0042.1;0.892434,MA0043.1;0.134137,MA0046.1;12.7978,MA0048.1;0.100287,MA0050.1;0.112241,MA0051.1;0.411864,MA0052.1;0.1697,MA0055.1;0.75625,MA0056.1;0,MA0057.1;0.044688,MA0058.1;1.40505,MA0059.1;2.05133,MA0060.1;4.35816e-05,MA0061.1;0.00154374,MA0063.1;0,MA0066.1;0.755223,MA0067.1;0.580599,MA0068.1;0.251413,MA0069.1;0.0429721,MA0070.1;0.235651,MA0071.1;0.294715,MA0072.1;0.0376584,MA0073.1;0.0518103,MA0074.1;0.034207,MA0076.1;0.000154555,MA0077.1;0.386753,MA0078.1;0.471642,MA0081.1;0.0630011,MA0083.1;0.0103085,MA0084.1;0.967398,MA0087.1;1.21926,MA0088.1;0.706124,MA0089.1;0,MA0090.1;0.417711,MA0091.1;2.51151,MA0092.1;0.584957,MA0093.1;1.54483,MA0095.1;0,MA0098.1;0,MA0100.1;0.234464,MA0101.1;0.00076627,MA0103.1;3.71886,MA0105.1;0.04882,MA0106.1;0.199117,MA0107.1;0.0118382,MA0108.2;1.16057,MA0109.1;0,MA0111.1;0.141639,MA0113.1;0.14354,MA0114.1;1.92495,MA0115.1;0.77722,MA0116.1;0.312078,MA0117.1;0.33712,MA0119.1;1.58524,MA0122.1;0.076845,MA0124.1;1.48285,MA0125.1;1.55447,MA0130.1;0,MA0131.1;0.0756152,MA0132.1;0,MA0133.1;0,MA0135.1;0.324611,MA0136.1;0.0409562,MA0139.1;0.355469,MA0140.1;0.124674,MA0141.1;0.565948,MA0142.1;0.230897,MA0143.1;0.351993,MA0144.1;0.648391,MA0145.1;0.233663,MA0146.1;1.1231,MA0147.1;0.967267,MA0148.1;2.85308,MA0149.1;7.94167e-05,MA0062.2;5.71904e-05,MA0035.2;0.0390291,MA0039.2;0.00181364,MA0138.2;0.326671,MA0002.2;0.10076,MA0137.2;1.44271,MA0104.2;1.1833,MA0047.2;2.65437,MA0112.2;0.201604,MA0065.2;1.00057,MA0150.1;0.000210939,MA0151.1;0,MA0152.1;0.306913,MA0153.1;7.66008,MA0154.1;1.1057,MA0155.1;0.0521023,MA0156.1;0.00751305,MA0157.1;1.71704,MA0158.1;0,MA0159.1;0.0849684,MA0160.1;0.441037,MA0161.1;0,MA0162.1;0.00539302,MA0163.1;0.0977178,MA0164.1;0.73419,MA0080.2;0.00164457,MA0018.2;0.0663448,MA0099.2;0.00864036,MA0079.2;5.68183e-05,MA0102.2;0.551775,MA0258.1;0.14961,MA0259.1;0.38982,MA0442.1;0}}
|full_id=C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell
|id=C76
}}

Latest revision as of 10:25, 17 September 2013


Full id: C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell



Phase1 CAGE Peaks

Hg19::chr10:18580030..18580069,+p@chr10:18580030..18580069
+
Hg19::chr10:26223126..26223136,+p6@MYO3A
Hg19::chr10:26223137..26223175,+p1@MYO3A
Hg19::chr10:26223200..26223212,+p4@MYO3A
Hg19::chr10:26223250..26223262,+p2@MYO3A
Hg19::chr10:26223415..26223425,+p@chr10:26223415..26223425
+
Hg19::chr10:26506919..26506931,-p@chr10:26506919..26506931
-
Hg19::chr10:66381988..66381993,-p@chr10:66381988..66381993
-
Hg19::chr10:66386701..66386711,-p@chr10:66386701..66386711
-
Hg19::chr11:17435105..17435116,-p3@ABCC8
Hg19::chr11:2428348..2428358,-p@chr11:2428348..2428358
-
Hg19::chr11:2428376..2428392,-p@chr11:2428376..2428392
-
Hg19::chr11:2435409..2435443,-p@chr11:2435409..2435443
-
Hg19::chr11:2436019..2436030,-p@chr11:2436019..2436030
-
Hg19::chr11:2436040..2436051,-p@chr11:2436040..2436051
-
Hg19::chr11:2436082..2436085,-p@chr11:2436082..2436085
-
Hg19::chr11:2436541..2436561,-p@chr11:2436541..2436561
-
Hg19::chr11:2439293..2439304,-p@chr11:2439293..2439304
-
Hg19::chr11:31838106..31838128,+p9@RCN1
Hg19::chr11:79742692..79742706,+p@chr11:79742692..79742706
+
Hg19::chr12:131117116..131117123,-p@chr12:131117116..131117123
-
Hg19::chr12:131117129..131117135,-p@chr12:131117129..131117135
-
Hg19::chr12:131117147..131117158,-p@chr12:131117147..131117158
-
Hg19::chr12:131117194..131117202,-p@chr12:131117194..131117202
-
Hg19::chr12:14849414..14849417,-p8@GUCY2C
Hg19::chr12:14849430..14849439,-p4@GUCY2C
Hg19::chr12:14849447..14849450,-p7@GUCY2C
Hg19::chr12:14849455..14849469,-p2@GUCY2C
Hg19::chr12:14849470..14849540,-p1@GUCY2C
Hg19::chr13:112170746..112170756,-p@chr13:112170746..112170756
-
Hg19::chr13:112170767..112170779,-p@chr13:112170767..112170779
-
Hg19::chr13:112170781..112170788,-p@chr13:112170781..112170788
-
Hg19::chr13:112170794..112170810,-p@chr13:112170794..112170810
-
Hg19::chr13:114202163..114202178,+p@chr13:114202163..114202178
+
Hg19::chr13:114202197..114202216,+p@chr13:114202197..114202216
+
Hg19::chr13:114202634..114202655,+p@chr13:114202634..114202655
+
Hg19::chr13:33590553..33590570,+p1@KL
Hg19::chr13:33642579..33642583,+p@chr13:33642579..33642583
+
Hg19::chr14:23465559..23465575,-p@chr14:23465559..23465575
-
Hg19::chr14:93388970..93388985,+p3@CHGA
Hg19::chr14:93388989..93389000,+p6@CHGA
Hg19::chr14:93389002..93389019,+p2@CHGA
Hg19::chr14:93389079..93389083,+p24@CHGA
Hg19::chr14:93389488..93389501,+p1@CHGA
Hg19::chr14:93397636..93397669,-p@chr14:93397636..93397669
-
Hg19::chr14:93397923..93397948,-p@chr14:93397923..93397948
-
Hg19::chr15:69854153..69854167,+p3@ENST00000498938
Hg19::chr15:69854189..69854206,+p2@ENST00000498938
Hg19::chr15:69854209..69854229,+p1@ENST00000498938
Hg19::chr16:1481075..1481082,+p@chr16:1481075..1481082
+
Hg19::chr16:2521470..2521487,+p2@NTN3
Hg19::chr16:2521503..2521514,+p5@NTN3
Hg19::chr16:2521599..2521611,+p7@NTN3
Hg19::chr16:88571559..88571611,+p@chr16:88571559..88571611
+
Hg19::chr16:89688655..89688668,+p@chr16:89688655..89688668
+
Hg19::chr16:89688715..89688726,+p@chr16:89688715..89688726
+
Hg19::chr17:26911586..26911592,-p9@SPAG5
Hg19::chr17:26911596..26911605,-p8@SPAG5
Hg19::chr17:27892902..27892907,+p@chr17:27892902..27892907
+
Hg19::chr17:27892922..27892925,+p@chr17:27892922..27892925
+
Hg19::chr17:27892945..27892952,+p@chr17:27892945..27892952
+
Hg19::chr17:32314322..32314327,-p@chr17:32314322..32314327
-
Hg19::chr17:32314379..32314387,-p@chr17:32314379..32314387
-
Hg19::chr17:39868577..39868585,+p1@GAST
Hg19::chr17:73553913..73553927,+p2@LLGL2
Hg19::chr17:73642712..73642733,+p3@C17orf110
Hg19::chr17:77788401..77788413,+p@chr17:77788401..77788413
+
Hg19::chr17:79225428..79225433,-p@chr17:79225428..79225433
-
Hg19::chr17:79225437..79225448,-p@chr17:79225437..79225448
-
Hg19::chr17:80972359..80972396,-p@chr17:80972359..80972396
-
Hg19::chr18:13165707..13165731,-p@chr18:13165707..13165731
-
Hg19::chr18:34124482..34124497,+p16@FHOD3
Hg19::chr18:34124507..34124520,+p8@FHOD3
Hg19::chr18:39739337..39739348,+p@chr18:39739337..39739348
+
Hg19::chr18:39739349..39739374,+p@chr18:39739349..39739374
+
Hg19::chr18:39739379..39739393,+p@chr18:39739379..39739393
+
Hg19::chr18:46812963..46812973,-p@chr18:46812963..46812973
-
Hg19::chr18:74350663..74350688,-p@chr18:74350663..74350688
-
Hg19::chr19:13710923..13710935,-p@chr19:13710923..13710935
-
Hg19::chr19:13710998..13711005,-p@chr19:13710998..13711005
-
Hg19::chr19:16838056..16838070,+p@chr19:16838056..16838070
+
Hg19::chr19:18846389..18846407,+p8@CRTC1
Hg19::chr19:36611243..36611285,+p@chr19:36611243..36611285
+
Hg19::chr19:42928426..42928438,+p2@ENST00000457234
Hg19::chr19:7184762..7184771,-p@chr19:7184762..7184771
-
Hg19::chr19:7184803..7184814,-p@chr19:7184803..7184814
-
Hg19::chr19:7184828..7184838,-p@chr19:7184828..7184838
-
Hg19::chr1:109079557..109079589,-p@chr1:109079557..109079589
-
Hg19::chr1:117008868..117008875,+p@chr1:117008868..117008875
+
Hg19::chr1:159892447..159892482,-p@chr1:159892447..159892482
-
Hg19::chr1:165325006..165325012,-p2@LMX1A
Hg19::chr1:2986285..2986306,-p@chr1:2986285..2986306
-
Hg19::chr1:54417667..54417685,+p9@LRRC42
Hg19::chr1:54417689..54417696,+p12@LRRC42
Hg19::chr20:1856502..1856513,-p@chr20:1856502..1856513
-
Hg19::chr20:20392704..20392711,-p@chr20:20392704..20392711
-
Hg19::chr20:20392726..20392736,-p@chr20:20392726..20392736
-
Hg19::chr20:20392756..20392765,-p@chr20:20392756..20392765
-
Hg19::chr20:21082096..21082103,-p7@LINC00237
Hg19::chr20:21082105..21082117,-p2@LINC00237
Hg19::chr20:21503214..21503241,-p@chr20:21503214..21503241
-
Hg19::chr20:21503302..21503344,-p@chr20:21503302..21503344
-
Hg19::chr20:21503356..21503373,-p@chr20:21503356..21503373
-
Hg19::chr20:21918384..21918387,+p@chr20:21918384..21918387
+
Hg19::chr20:21918392..21918404,+p@chr20:21918392..21918404
+
Hg19::chr20:21918433..21918444,+p@chr20:21918433..21918444
+
Hg19::chr20:21918450..21918454,+p@chr20:21918450..21918454
+
Hg19::chr20:21918470..21918480,+p@chr20:21918470..21918480
+
Hg19::chr20:62130745..62130766,-p15@EEF1A2
Hg19::chr21:47588743..47588750,-p9@C21orf56
Hg19::chr21:47588853..47588891,-p6@C21orf56
Hg19::chr21:47738057..47738076,-p2@C21orf58
Hg19::chr21:47738112..47738133,-p3@C21orf58
Hg19::chr22:32555214..32555221,-p2@C22orf42
Hg19::chr22:32555284..32555296,-p1@C22orf42
Hg19::chr22:37505742..37505761,-p1@TMPRSS6
Hg19::chr22:37608500..37608509,-p7@SSTR3
Hg19::chr22:37608511..37608522,-p2@SSTR3
Hg19::chr22:37608711..37608730,-p8@SSTR3
Hg19::chr22:44377129..44377137,+p@chr22:44377129..44377137
+
Hg19::chr22:44377278..44377303,+p@chr22:44377278..44377303
+
Hg19::chr22:44535867..44535877,+p@chr22:44535867..44535877
+
Hg19::chr2:173600326..173600344,+p18@RAPGEF4
Hg19::chr2:182451404..182451414,-p@chr2:182451404..182451414
-
Hg19::chr2:182501137..182501145,-p@chr2:182501137..182501145
-
Hg19::chr2:182546258..182546267,+p@chr2:182546258..182546267
+
Hg19::chr2:182546303..182546317,+p@chr2:182546303..182546317
+
Hg19::chr2:182548429..182548438,-p@chr2:182548429..182548438
-
Hg19::chr2:182548440..182548448,-p@chr2:182548440..182548448
-
Hg19::chr2:182548451..182548457,-p@chr2:182548451..182548457
-
Hg19::chr2:209407361..209407372,+p@chr2:209407361..209407372
+
Hg19::chr2:219849897..219849928,-p2@FEV
Hg19::chr2:238647466..238647474,+p@chr2:238647466..238647474
+
Hg19::chr2:241836298..241836311,-p4@C2orf54
Hg19::chr2:3487019..3487031,-p@chr2:3487019..3487031
-
Hg19::chr2:9059355..9059366,-p@chr2:9059355..9059366
-
Hg19::chr2:9059377..9059382,-p@chr2:9059377..9059382
-
Hg19::chr3:127634202..127634213,+p8@KBTBD12
Hg19::chr3:149689576..149689588,-p@chr3:149689576..149689588
-
Hg19::chr3:169587717..169587728,-p1@LRRC31
Hg19::chr3:178137027..178137041,+p2@KCNMB2-IT1
Hg19::chr3:178137042..178137098,+p1@KCNMB2-IT1
Hg19::chr3:178213272..178213277,+p@chr3:178213272..178213277
+
Hg19::chr3:178235746..178235750,+p@chr3:178235746..178235750
+
Hg19::chr3:4810204..4810210,+p34@ITPR1
Hg19::chr3:73500257..73500273,-p@chr3:73500257..73500273
-
Hg19::chr3:73500279..73500290,-p@chr3:73500279..73500290
-
Hg19::chr4:142199946..142199958,-p1@ENST00000514347
Hg19::chr4:22737597..22737604,+p@chr4:22737597..22737604
+
Hg19::chr4:46391248..46391261,-p16@GABRA2
Hg19::chr4:46391473..46391496,-p8@GABRA2
Hg19::chr4:8012437..8012446,-p12@ABLIM2
Hg19::chr5:137610117..137610157,-p2@GFRA3
Hg19::chr5:137610161..137610174,-p3@GFRA3
Hg19::chr5:137610185..137610196,-p6@GFRA3
Hg19::chr5:137610230..137610244,-p5@GFRA3
Hg19::chr5:137610263..137610273,-p7@GFRA3
Hg19::chr5:137610280..137610295,-p4@GFRA3
Hg19::chr5:137610300..137610332,-p1@GFRA3
Hg19::chr5:170105957..170105992,-p@chr5:170105957..170105992
-
Hg19::chr6:117198376..117198383,+p2@RFX6
Hg19::chr6:117198400..117198441,+p1@RFX6
Hg19::chr6:117198458..117198464,+p4@RFX6
Hg19::chr6:138820685..138820701,-p16@NHSL1
Hg19::chr6:18208412..18208420,+p@chr6:18208412..18208420
+
Hg19::chr6:18208425..18208436,+p@chr6:18208425..18208436
+
Hg19::chr6:20705180..20705181,+p@chr6:20705180..20705181
+
Hg19::chr6:25661559..25661563,+p@chr6:25661559..25661563
+
Hg19::chr6:25661565..25661601,+p@chr6:25661565..25661601
+
Hg19::chr6:25661603..25661614,+p@chr6:25661603..25661614
+
Hg19::chr6:25661625..25661634,+p@chr6:25661625..25661634
+
Hg19::chr6:25661650..25661661,+p@chr6:25661650..25661661
+
Hg19::chr6:25661814..25661832,+p@chr6:25661814..25661832
+
Hg19::chr6:39282405..39282406,-p5@KCNK17
Hg19::chr6:39290371..39290388,-p4@KCNK16
Hg19::chr6:39290407..39290416,-p5@KCNK16
Hg19::chr6:39290436..39290454,-p3@KCNK16
Hg19::chr6:39290466..39290482,-p2@KCNK16
Hg19::chr6:39290499..39290502,-p8@KCNK16
Hg19::chr6:39290752..39290794,-p1@KCNK16
Hg19::chr6:39290815..39290820,-p6@KCNK16
Hg19::chr6:49467576..49467583,+p5@GLYATL3
Hg19::chr6:49467630..49467640,+p3@GLYATL3
Hg19::chr6:49467646..49467657,+p1@GLYATL3
Hg19::chr6:49467678..49467693,+p2@GLYATL3
Hg19::chr6:49467718..49467724,+p4@GLYATL3
Hg19::chr7:1140919..1140936,+p@chr7:1140919..1140936
+
Hg19::chr7:127258120..127258138,-p3@PAX4
Hg19::chr7:127258139..127258173,-p1@PAX4
Hg19::chr7:127258190..127258201,-p2@PAX4
Hg19::chr7:127260123..127260165,+p@chr7:127260123..127260165
+
Hg19::chr7:44229027..44229055,-p1@GCK
Hg19::chr7:44360862..44360872,+p@chr7:44360862..44360872
+
Hg19::chr7:4474103..4474113,+p@chr7:4474103..4474113
+
Hg19::chr7:4476270..4476275,-p@chr7:4476270..4476275
-
Hg19::chr7:81779566..81779574,-p@chr7:81779566..81779574
-
Hg19::chr7:81803355..81803360,-p@chr7:81803355..81803360
-
Hg19::chr7:81824973..81824977,-p@chr7:81824973..81824977
-
Hg19::chr7:92834958..92834964,-p6@HEPACAM2
Hg19::chr7:92838072..92838076,-p@chr7:92838072..92838076
-
Hg19::chr7:92855762..92855790,-p1@HEPACAM2
Hg19::chr7:96125173..96125184,-p@chr7:96125173..96125184
-
Hg19::chr8:121054330..121054333,-p@chr8:121054330..121054333
-
Hg19::chr8:121056304..121056311,-p@chr8:121056304..121056311
-
Hg19::chr8:121056349..121056360,-p@chr8:121056349..121056360
-
Hg19::chr8:121056549..121056554,-p@chr8:121056549..121056554
-
Hg19::chr8:121058540..121058543,-p@chr8:121058540..121058543
-
Hg19::chr8:121062548..121062551,-p@chr8:121062548..121062551
-
Hg19::chr8:121066549..121066554,-p@chr8:121066549..121066554
-
Hg19::chr8:14066604..14066622,-p@chr8:14066604..14066622
-
Hg19::chr8:22000519..22000525,-p@chr8:22000519..22000525
-
Hg19::chr8:22001308..22001310,-p@chr8:22001308..22001310
-
Hg19::chr8:33464773..33464782,+p@chr8:33464773..33464782
+
Hg19::chr8:41484957..41484961,-p@chr8:41484957..41484961
-
Hg19::chr8:41485005..41485017,-p@chr8:41485005..41485017
-
Hg19::chr8:41485037..41485047,-p@chr8:41485037..41485047
-
Hg19::chr8:41485173..41485181,-p@chr8:41485173..41485181
-
Hg19::chr8:41485201..41485208,-p@chr8:41485201..41485208
-
Hg19::chr8:41485217..41485222,-p@chr8:41485217..41485222
-
Hg19::chr8:41486855..41486866,-p@chr8:41486855..41486866
-
Hg19::chr8:41508303..41508308,-p2@NKX6-3
Hg19::chr8:41508327..41508355,-p1@NKX6-3
Hg19::chr8:41508473..41508497,+p@chr8:41508473..41508497
+
Hg19::chr8:41508583..41508595,+p@chr8:41508583..41508595
+
Hg19::chr8:41508626..41508633,+p@chr8:41508626..41508633
+
Hg19::chr8:41512768..41512771,+p@chr8:41512768..41512771
+
Hg19::chr8:41512838..41512845,+p@chr8:41512838..41512845
+
Hg19::chr9:116861343..116861349,-p7@KIF12
Hg19::chr9:116861558..116861582,-p1@KIF12
Hg19::chr9:129097583..129097594,+p9@FAM125B
Hg19::chr9:129097637..129097639,+p29@FAM125B
Hg19::chr9:130404686..130404720,+p@chr9:130404686..130404720
+
Hg19::chr9:134420922..134420947,+p@chr9:134420922..134420947
+
Hg19::chr9:136753303..136753309,-p@chr9:136753303..136753309
-
Hg19::chr9:139658908..139658936,-p2@LCN15
Hg19::chr9:35237460..35237466,+p@chr9:35237460..35237466
+
Hg19::chr9:35237473..35237478,+p@chr9:35237473..35237478
+
Hg19::chrX:129519632..129519657,-p1@GPR119


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
3.1297509870497e-050.01981132374802464125Integration of energy metabolism (Reactome):REACT_1505



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030073insulin secretion0.0207743713648184
GO:0002790peptide secretion0.0207743713648184
GO:0030072peptide hormone secretion0.0207743713648184
GO:0005515protein binding0.036532638926643
GO:0046879hormone secretion0.036532638926643
GO:0015833peptide transport0.036532638926643
GO:0060002plus-end directed microfilament motor activity0.036532638926643
GO:0051594detection of glucose0.036532638926643
GO:0009730detection of carbohydrate stimulus0.036532638926643
GO:0005536glucose binding0.036532638926643
GO:0004340glucokinase activity0.036532638926643
GO:0046873metal ion transmembrane transporter activity0.036532638926643
GO:0022836gated channel activity0.036532638926643
GO:0006112energy reserve metabolic process0.0379028371044298
GO:0006813potassium ion transport0.0429179710207958
GO:0003001generation of a signal involved in cell-cell signaling0.0429179710207958
GO:0009726detection of endogenous stimulus0.0429179710207958
GO:0045721negative regulation of gluconeogenesis0.0429179710207958
GO:0032024positive regulation of insulin secretion0.0429179710207958
GO:0007267cell-cell signaling0.0429179710207958
GO:0035081induction of programmed cell death by hormones0.0429179710207958
GO:0008628induction of apoptosis by hormones0.0429179710207958
GO:0005979regulation of glycogen biosynthetic process0.0429179710207958
GO:0008140cAMP response element binding protein binding0.0429179710207958
GO:0045912negative regulation of carbohydrate metabolic process0.0429179710207958
GO:0004566beta-glucuronidase activity0.0429179710207958
GO:0045725positive regulation of glycogen biosynthetic process0.0429179710207958
GO:0008422beta-glucosidase activity0.0429179710207958
GO:0015079potassium ion transmembrane transporter activity0.0429179710207958
GO:0030501positive regulation of bone mineralization0.0429179710207958
GO:0005216ion channel activity0.0429179710207958
GO:0030001metal ion transport0.0429179710207958
GO:0007010cytoskeleton organization and biogenesis0.0429179710207958
GO:0022838substrate specific channel activity0.0429179710207958
GO:0022803passive transmembrane transporter activity0.0429179710207958
GO:0015267channel activity0.0429179710207958
GO:0006111regulation of gluconeogenesis0.0429179710207958
GO:0005220inositol 1,4,5-triphosphate-sensitive calcium-release channel activity0.0429179710207958
GO:0008095inositol-1,4,5-triphosphate receptor activity0.0429179710207958
GO:0030898actin-dependent ATPase activity0.0429179710207958
GO:0043284biopolymer biosynthetic process0.0429179710207958



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
epithelial cell of cervix1.55e-982
Uber Anatomy
Ontology termp-valuen
uterine epithelium1.55e-982
cervix epithelium1.55e-982
uterine cervix4.27e-346
neck of organ4.27e-346
uterus6.74e-1121
embryonic uterus1.80e-1022
internal female genitalia1.80e-1022
internal genitalia2.15e-0925
female reproductive organ8.21e-0737
female reproductive system8.21e-0737
Disease
Ontology termp-valuen
cervical cancer1.48e-405
female reproductive organ cancer8.32e-0927
reproductive organ cancer2.67e-0829


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.0617061
MA0004.11.41945
MA0006.10.0576547
MA0007.10.420931
MA0009.10.0484012
MA0014.10.0116544
MA0017.11.902
MA0019.10.12542
MA0024.10.423224
MA0025.10.118087
MA0027.11.07684
MA0028.10.0343273
MA0029.10.158263
MA0030.10.660812
MA0031.10.658914
MA0038.10.036893
MA0040.11.67636
MA0041.11.87506
MA0042.10.892434
MA0043.10.134137
MA0046.112.7978
MA0048.10.100287
MA0050.10.112241
MA0051.10.411864
MA0052.10.1697
MA0055.10.75625
MA0056.10
MA0057.10.044688
MA0058.11.40505
MA0059.12.05133
MA0060.14.35816e-05
MA0061.10.00154374
MA0063.10
MA0066.10.755223
MA0067.10.580599
MA0068.10.251413
MA0069.10.0429721
MA0070.10.235651
MA0071.10.294715
MA0072.10.0376584
MA0073.10.0518103
MA0074.10.034207
MA0076.10.000154555
MA0077.10.386753
MA0078.10.471642
MA0081.10.0630011
MA0083.10.0103085
MA0084.10.967398
MA0087.11.21926
MA0088.10.706124
MA0089.10
MA0090.10.417711
MA0091.12.51151
MA0092.10.584957
MA0093.11.54483
MA0095.10
MA0098.10
MA0100.10.234464
MA0101.10.00076627
MA0103.13.71886
MA0105.10.04882
MA0106.10.199117
MA0107.10.0118382
MA0108.21.16057
MA0109.10
MA0111.10.141639
MA0113.10.14354
MA0114.11.92495
MA0115.10.77722
MA0116.10.312078
MA0117.10.33712
MA0119.11.58524
MA0122.10.076845
MA0124.11.48285
MA0125.11.55447
MA0130.10
MA0131.10.0756152
MA0132.10
MA0133.10
MA0135.10.324611
MA0136.10.0409562
MA0139.10.355469
MA0140.10.124674
MA0141.10.565948
MA0142.10.230897
MA0143.10.351993
MA0144.10.648391
MA0145.10.233663
MA0146.11.1231
MA0147.10.967267
MA0148.12.85308
MA0149.17.94167e-05
MA0062.25.71904e-05
MA0035.20.0390291
MA0039.20.00181364
MA0138.20.326671
MA0002.20.10076
MA0137.21.44271
MA0104.21.1833
MA0047.22.65437
MA0112.20.201604
MA0065.21.00057
MA0150.10.000210939
MA0151.10
MA0152.10.306913
MA0153.17.66008
MA0154.11.1057
MA0155.10.0521023
MA0156.10.00751305
MA0157.11.71704
MA0158.10
MA0159.10.0849684
MA0160.10.441037
MA0161.10
MA0162.10.00539302
MA0163.10.0977178
MA0164.10.73419
MA0080.20.00164457
MA0018.20.0663448
MA0099.20.00864036
MA0079.25.68183e-05
MA0102.20.551775
MA0258.10.14961
MA0259.10.38982
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
FOXA2#3170232.380254900467650.0001239617617779750.00165259668602629



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C76&oldid=3067194"