Personal tools

Coexpression cluster:C3203: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Coexpression_clusters
{{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0.229886828011239,0,0.101667003219354,0,0,0,0,0,0,0.539379893408307,0.4202867974138,0.287883245271605,0.517181099614796,0.189630012295427,0.138816573042107,0.574133472052094,0.472817004579933,0.54638779533177,0.144064671875115,0,0.0625128387853364,0,0.114346030083907,0,0,0,0,0,0.0793782434714987,0.15655573578941,0,0,0,0.0589565109853561,0.139210117864267,0,0.165795549095301,0.348986669269068,0.28535904381024,0.197386646657653,0.0990452042849908,0.092187879276543,0.227755975528437,0.360019282223445,0.371855321441455,0.138771381856642,0.104796384789156,0.0880380456512581,0.207410238582937,0.466211111825445,0.46508698088545,0,0,0,0.334621998523167,0.329351182440039,0.351341005362286,0.097343627213097,0,0.362319030942428,0.205583124092593,0.393243529040083,0,0,0.0837191039350518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195681888795628,0,0.246633096772289,0,0,0.101535401656103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288997341132196,0.221463322705341,0.183841515445592,0.182961114915842,0,0.240940657106499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560577092055277,0.688224224545008,0.00358688342124575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0503156775564332,0,0,0,0,0,0,0.135427931031567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178710225414154,0.158079164695268,0.926362826800478,0.808462190008375,0.943741477731467,0.6936495857979,0.848540132744215,0.503772188315232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356906685747724,0.12571701528169,0,0,0,0,0,0.414781163730515,0,0.298362323348138,0,0.133213135365203,0.0737831746122416,0,0,0,0.310347787595302,0,0,0,0,0,0,0,0,0,0,0.119698443341419,0.195096818407981,0,0,0,0.472851918038659,0.331352304330334,0.231651318992539,0.302945276961852,0.177527765965176,0,0.140504405746413,0,0,0,0,0.109182349273979,0.125934274376603,0.247937465857602,0.0575109031693576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088793487769067,0,0.146094520726236,0,0,0,0,0,0,0,0,0,0,0.144281939746476,0,0.052441152940763,0.246075866847322,0.361991832974167,0,0.176828584828355,0.214297657915009,0.242791553592671,0,0.262173581098575,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0776589694549609,0.172032804693735,0,0,0.121428558500853,0,0,0.0896748239484563,0,0,0,0,0,0,0,0,0,0,0,0,0.367254128645786,0.255761024149889,0.0938639559954845,0,0,0,0.371732441100379,0.228692365630881,0.52543993989795,0,0.119471955332098,0,0,0.0849035433286077,0,0.188054201617406,0.301763235794132,0.305244952580507,0.262706372468367,0.160693426449034,0,0,0.099145253918139,0.29755128547361,0.217683092140345,0.0425916600387234,0.261054639134477,0.333474076770968,0.430469802339611,0,0,0.171244687451929,0,0,0,0.0571553686541154,0,0.0355204411879812,0.102809556581045,0.066432124538699,0.0763454992192642,0.174913108959819,0.28112886235651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105352457754613,0.117825963998405,0,0,0,0.172496019467973,0,0,0,0,0,0,0,0,0.198320387665648,0,0,0,0,0,0,0,0,0,0,0,0.130312767515111,0.0398985583070718,0,0,0.19447626789484,0.15548949326123,0,0.159395773552723,0,0,0,0,0,0,0,0,0,0.264035290066757,0,0.392789276207984,0,0,0.233356205412612,0.169756354072204,0,0,0,0.196235471445381,0,0.281701056973614,0,0,0,0,0.0798320938648321,0.26756886175468,0.227117834445179,0.116355582210209,0.160574230329875,0.222038902954069,0,0,0,0,0,0,0.408614434258682,0,0,0,0.191409364113299,0,0,0,0.299757310563537,0.327431548746431,0.159938416493743,0,0.034377883739342,0.0789089986057754,0.376835919641402,0.302705522830785,0.080820276450175,0.371794071542173,0,0.10078017905008,0.112942256193696,0,0.0170587850746231,0,0,0.328480217627131,0.395202216134025,0,0,0,0,0.226022358086975,0.516969167765541,0,0.253366729894761,0.030883943172502,0.408685050915787,0,0.304741869741253,0.576262827415321,0.22101642443278,0.27568969562093,0.364797128903212,0,0.192482419495004,0.22854210410682,0,0.389359781352817,0.717554782822273,0.470653400737023,0,0.0380625695285996,0,0,0.050197747123139,0,0,0,0,0,0,0.212984640524252,0.330947111885972,0.452949634040394,0.217264351326445,0,0.2093012868032,0.492186002567039,0,0,0,0.345024663353883,0,0.166882495138135,0,0.337257085318794,0.0715753130339987,0,0.534002526650922,0.669583990839343,0.0300471133262784,0.447759582825635,0.33052945589219,0.116544217527645,0.220626815433903,0,0,0,0,0.182037609946382,0,0.477463018736572,0.177635109332951,0,0,0,0,0.0769963366386578,0.20892292156567,0.224777002410304,0,0.018877979634509,0.229533065350686,0,0.726611188307205,0.358071584125933,0,0.499873439802377,0.126254769289342,0.226955440748216,0,0.137593858891759,0.0919109500998384,0.225185446293564,0.332565964082565,0,0.198079800894878,0.204234048342335,0.105104912336182,0.357451879411068,0,0,0,0,0,0.203858513377274,0,0,0,0,0.752803999223227,0,0,0,0.144172393115712,0.0679432810511184,0.254120022070344,0.320068822863804,0.700602373832031,0.633564038157672,0.745843009675886,0.371038911293733,0.248905129112398,0.320871309748802,0,0.289068845040772,0.300299152802392,0.0435981622194311,0,0.197486100889927,0,0,0,0,0,0,0.53078909704316,0.0342643952743103,0,0.22527633332512,0,0.36643582506357,0.360371772858008,0.101906882599192,0.0685890998680107,0.493380675126398,0,0.251886688790383,0,0,0,0.191460545844158,0,0,0,0,0,0.663912294693437,0.275557388108753,0.536624755543394,0.273310730353101,0.196841684047034,0.191631306413623,0.285882580423928,0.294122279683527,0.272969505036546,0.0613201791501264,0.109060369074458,0,0.46115721639046,0.36253699517215,0,0,0,0,0,0,0,0,0,0,0,0.152049780394933,0.0626808480570541,0,0,0,0,0,0,0,0.265848795176174,0,0,0,0,0,0,0.292942235460855,0.316433336976288,0.100713120693921,0,0,0.0950774961121382,0,0,0,0.274953110804954,0.141709355787741,0,0.30186282516526,0,0.206210390734626,0.446748309289678,0.0773171348687735,0.076021812672317,0.12291372462026,0.303405790635122,0.297342782617725,0.0832560638586098,0,0.0440266644764932,0,0,0.13615336353379,0,0,0.0989165855502945,0,0.35374846642697,0.21886565071406,0,0.267242073812037,0,0.427475520023261,0,0.506251804150229,0,0,0,0.306996761979176,0.383270498593678,0.120332935578059,0.260182442680742,0.514367790760809,0.278535091761322,0.328446785315963,0,0.296714160914376,0.261450363437608,0.190411767844756,0.333498996091783,0,0,0.341137110637296,0.161745814848269,0.0797978929983786,0.0490513435382859,0.101027244313887,0,0.275803318589154,0.345506356023153,0.250682963288844,0.350271434513732,0.33071495226554,0.881077907986011,0,0,0.130893964993104,0.357482083155677,0,0,0.345164122303945,0.0890788809625826,0.519337216284204,0.447562169344755,0.0687378478097941,0.360105633121321,0.219513203763282,0.261823374153717,0,0.321992430347951,0.372630341524169,0.193276109134867,0.451220938524739,0.309686382876308,0,0.132702316438765,0.289607160067736,0.0477581357894489,0,0,0.0817850418435885,0,0,0,0.0485707522809905,0.0355151496094428,0.153323010348428,0.163821185185472,0.117339711759041,0.291266468109506,0.389895903311266,0.338018552518067,0.176649145361757,0,0.0424427259395948,0.161387520963733,0.030726650018839,0.553073623582964,0.503580772362984,0.316029258017822,0.527870529067486,0.489799605146784,0.162232295399933,0.208815630292662,0.403106260209069,0.0998818236080821,0,0.288407123604235,0.410012157214631,0.0846985734951128,0.26606967772796,0,0.167293577865052,0.0526615420969484,0.322085411133589,0.352158886104249,0,0.21535488492417,0.238130540907848,0.0161787599787256,0.109470268990959,0.146640891200969,0.347104870127962,0.50266652392345,0.412809946118542,0,0,0,0.546953136412573,0.503151901269687,0,0.562496230052719,1.03690997791897,0.54172427002291,0.87612519786976,0.139530721565415,0.369182569648904,0.424610342996058,0.236545063361102,0.154262022540406,0.234059791889601,0.216400568669148,0.241769689326019,0,0.261836723799116,0.559610229373547,0.00321387981468063,0.127828009549688,0.103601303525827,0.194423497093196,0.124719478691449,0.23870568380703,0.185722501004441,0,0.21831582420023,0,0.20715139958257,0,0.221611588102807,0.146917605400546,0.12076093114532|full_id=C3203_testicular_Mast_H9_Eosinophils_iPS_immature_gall|id=C3203|ontology_enrichment_celltype=CL:0002319!4.48e-08!25;CL:0000039!8.52e-07!7;CL:0000586!8.52e-07!7|ontology_enrichment_disease=DOID:0050687!1.17e-09!143;DOID:305!8.68e-09!106|ontology_enrichment_uberon=UBERON:0001017!4.13e-22!81;UBERON:0001016!1.26e-21!89;UBERON:0001049!1.93e-20!56;UBERON:0005068!1.93e-20!56;UBERON:0006241!1.93e-20!56;UBERON:0007135!1.93e-20!56;UBERON:0000073!1.64e-19!53;UBERON:0002616!1.64e-19!53;UBERON:0000955!5.34e-18!68;UBERON:0006238!5.34e-18!68;UBERON:0011216!5.74e-17!223;UBERON:0003075!1.40e-15!82;UBERON:0007284!1.40e-15!82;UBERON:0002346!4.18e-15!86;UBERON:0001893!1.10e-14!34;UBERON:0002780!1.29e-14!41;UBERON:0001890!1.29e-14!41;UBERON:0003080!1.29e-14!41;UBERON:0006240!1.29e-14!41;UBERON:0001869!3.42e-14!32;UBERON:0003528!3.46e-14!34;UBERON:0002020!3.46e-14!34;UBERON:0002791!1.13e-13!32;UBERON:0003056!3.37e-13!61;UBERON:0000956!5.93e-13!25;UBERON:0000203!5.93e-13!25;UBERON:0010371!6.11e-13!104;UBERON:0002619!4.13e-12!22;UBERON:0004121!5.52e-12!171;UBERON:0000924!5.52e-12!171;UBERON:0006601!5.52e-12!171;UBERON:0000062!7.64e-12!503;UBERON:0001950!2.41e-11!20;UBERON:0000922!8.16e-09!592;UBERON:0007023!1.31e-08!114;UBERON:0000064!4.21e-08!218;UBERON:0003076!4.03e-07!15;UBERON:0003057!4.03e-07!15;UBERON:0005423!9.00e-07!581;UBERON:0005409!9.36e-07!25;UBERON:0010314!9.82e-07!132|tf_chipseq_enrich=ATF3#467;3:22.4631745260087:8.81932387510763e-05:0.00129292724058445!CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0189286058182059!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0114973580475816!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0278480091112462!CTCFL#140690;3:19.7464743589744:0.000129837200555116:0.00171234592609873!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0320684273874976!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0319260696103278!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0460312022632643!FOSL2#2355;2:11.2868004030411:0.010053458697312:0.0376590930342729!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108380259849366!IRF4#3662;3:21.9145126867441:9.49854535978121e-05:0.00136172763051502!JUN#3725;3:12.5128291923363:0.000510331399272625:0.00443157071660711!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0156233142749437!MEF2A#4205;2:12.495487273096:0.00823502947802974:0.0324758616341029!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0293358632128724!NFKB1#4790;3:5.48806342419384:0.00604938181565543:0.0268698757047267!RAD21#5885;3:10.3550338954563:0.000900491207356542:0.00662112089588214!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0275586115179127!SMC3#9126;3:15.0449328449328:0.000293582542037187:0.00308155448319816!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0189615908658761!ZBTB7A#51341;3:7.3519093078759:0.00251625586028227:0.0139688112364864!ZEB1#6935;3:16.8884320175439:0.000207548691732758:0.00242110776453451!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0108972479145212|tfbs_overrepresentation=0.147255,0.0586687,7.23898e-06,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.113083,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.0244227,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.0831028,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.00327964,0.064341,0.209032,0.0693924,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.21992,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.000359235,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.00384591,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.569726,0.0859236,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.00206011,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.219944,0.000318664,4.79733e-06,0.268011,0.563047,0.00879988,0.0263372,0.335423,0.629514,0.261553,0.446302,0.373681,0.309233,0.49143,0.330703,0.395854,0.329568,0.53472,0.615744,0.271958,0.292154,0.405773,0.39729,0.217139,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.376924,0.129235,0.0217334,0.528324,0.520763,0.370782,0.415647,0.142924,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.603208,0.283727,0.314747,0.21363,0.291709,0.448095,0.0563639,0.416816,0.292835,0.0280875,0.439556,0.373868,0.57762,0.608919,0.18237,5.72805e-06,4.6495e-09,0.161148,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.625945,0.503058,0.513852,0.522083,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.0158541,0.581837,0.412837,0.671377,0.546839,0.551561,0.448039,0.218623,0.312808,0.695172,0.0451077,0.0747529,0.229003,0.0222308,0.589326,0.50215,0.294698,0.34331,0.477304,0.289204,0.327108,0.0295492,0.278044,0.0263998,0.428671,0.228096,0.336314,0.19763,0.15631,0.567452,0.421464,0.48267,0.420626,0.516462,0.00404127,0.335105,0.144809,0.145539,0.385517,0.376191,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.306556,0.305777,0.601433,0.503082,0.522888,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.000106912,0.206222,0.525396,0.651524,0.113671,0.269226,0.339277,0.192529,0.281425,0.141758,0.455379,0.168058,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.273024,0.262389,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.11631,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.00427764,0.0627924,1.13138e-05,0.0179103,0.303939,0.279795,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.0214786,0.0966069,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.0355977,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.103658,0.122476,0.108872,0.11002,0.26144,0.0286025,0.190156,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.090504,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.0637246,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.00619136,0.128564,0.131452,0.0306206,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.047822,0.288159,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.0143259,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,9.8105e-10,0.0225581,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.0170505,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.544776,0.43956,0.37006,0.42622,0.448797,0.197484,0.396996,0.36145,0.406019,0.381071,0.580441,0.643768,0.432035,0.366326,0.390366,0.48809,0.50058,0.443185,0.522904,1.22574e-05,0.000283689,0.227104,0.518585,0.0734371,0.38649,0.284625,0.504757,0.55194,9.48418e-06,0.28907,0.164197,0.462688,0.0461094,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.000171205,0.390974,7.41696e-05,0.029557,0.161598,0.00310283,0.644754,0.496032,0.000266268,0.37357,3.35117e-05,0.477353,0.199161,2.35949e-07,0.0175763,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.00677385,0.181415,0.282286,0.00465874,0.616388,0.408413,0.516511,0.322213,0.656109,0.33942,0.0156581,0.387276,0.522605,0.0248202,0.537348,0.222037,0.416621,0.416292,0.462712,7.37404e-05,0.579431,0.0225745,0.452428,0.138871,0.308032,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.373557,0.523625,0.408861,0.365487,0.534741,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.351067,0.275347,0.00388821,0.305885,0.241132,0.0795725,0.30666,0.303709,0.495883,0.0867777,0.508064,0.250964,0.383276,0.457886,0.504711,0.220231,0.509064,0.196976,0.191517,0.463751,0.00258603,0.307334,0.459728,0.283463,0.0102434,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.0690807,0.387069,0.332774,0.52832,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.0146333,0.252184,0.378361,0.255516,0.20753,0.119514,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.0111711,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.00553696,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435|tfbs_overrepresentation_for_novel_motifs=0.699513,2.0185,0.690871,0.855819,0.641468,0.853988,0.937929,0.494933,1.23181,1.18351,0.820209,0.985163,2.90305,0.925331,1.54465,0.667627,1.17594,0.575162,0.452865,2.2774,0.69094,1.95727,1.96998,0.635379,0.743951,1.00973,0.409304,0.842925,2.63304,0.388328,3.10945,1.21459,3.34742,0.439574,3.63468,4.18818,0.596053,0.855276,0.567465,2.05816,0.598234,1.82956,0.259059,0.63803,0.901413,0.726632,0.939121,0.808003,0.247669,0.645308,1.02504,0.951993,0.336258,1.29475,1.45259,0.928548,0.650353,0.892517,0.388177,0.891404,1.25741,0.941709,0.492369,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,0.762094,0.502203,0.333216,1.45054,0.430728,0.414196,0.396746,1.12884,1.20029,1.74644,0.459024,1.14559,0.960908,0.498519,1.39759,0.169933,0.303648,0.381882,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,0.642354,0.560075,1.14422,1.27663,1.05794,1.68795,0.569121,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,2.94614,0.622396,0.703975,1.26794,0.684398,0.830777,1.58942,0.594137,0.188952,0.794219,1.10778,0.547323,1.44203,1.0504,0.850918,0.973172,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,0.974093,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,0.883164,1.08214,2.31409,1.82176,0.539692,0.318511,0.250511,1.37083,0.481626,0.941179,1.78371,1.03563,0.624795,0.744018,1.69223,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,2.24188,0.936473,0.265282|tfbs_overrepresentation_jaspar=MA0003.1;0.708947,MA0004.1;0.826076,MA0006.1;0.639288,MA0007.1;0.804807,MA0009.1;1.3275,MA0014.1;0.377374,MA0017.1;0.686276,MA0019.1;0.990656,MA0024.1;1.21731,MA0025.1;1.46617,MA0027.1;2.95767,MA0028.1;0.658629,MA0029.1;1.23771,MA0030.1;1.22561,MA0031.1;1.15713,MA0038.1;0.94098,MA0040.1;1.24388,MA0041.1;0.847069,MA0042.1;0.810843,MA0043.1;1.32783,MA0046.1;1.31611,MA0048.1;1.62115,MA0050.1;0.81185,MA0051.1;0.936307,MA0052.1;1.24796,MA0055.1;0.190716,MA0056.1;0,MA0057.1;10.104,MA0058.1;0.716037,MA0059.1;0.714521,MA0060.1;0.492218,MA0061.1;0.456531,MA0063.1;0,MA0066.1;0.941452,MA0067.1;1.65513,MA0068.1;0.405474,MA0069.1;1.31207,MA0070.1;1.30033,MA0071.1;0.897953,MA0072.1;1.29561,MA0073.1;13.9778,MA0074.1;0.935474,MA0076.1;0.734647,MA0077.1;1.28751,MA0078.1;1.04495,MA0081.1;0.714712,MA0083.1;1.33535,MA0084.1;1.84562,MA0087.1;1.29304,MA0088.1;1.31954,MA0089.1;0,MA0090.1;0.751469,MA0091.1;0.829044,MA0092.1;0.785956,MA0093.1;0.642957,MA0095.1;0,MA0098.1;0,MA0100.1;0.956299,MA0101.1;0.646932,MA0103.1;0.628063,MA0105.1;0.31555,MA0106.1;0.986396,MA0107.1;0.556367,MA0108.2;1.15387,MA0109.1;0,MA0111.1;0.767139,MA0113.1;1.00436,MA0114.1;3.41476,MA0115.1;1.57693,MA0116.1;0.560723,MA0117.1;1.36676,MA0119.1;0.695578,MA0122.1;1.39371,MA0124.1;1.53432,MA0125.1;1.44766,MA0130.1;0,MA0131.1;1.06461,MA0132.1;0,MA0133.1;0,MA0135.1;1.35921,MA0136.1;0.948776,MA0139.1;2.91906,MA0140.1;0.894983,MA0141.1;0.712476,MA0142.1;1.12317,MA0143.1;1.00455,MA0144.1;0.531867,MA0145.1;1.37817,MA0146.1;0.707589,MA0147.1;0.565108,MA0148.1;0.854239,MA0149.1;0.884158,MA0062.2;0.449458,MA0035.2;0.894194,MA0039.2;2.74132,MA0138.2;1.04628,MA0002.2;1.20011,MA0137.2;0.666381,MA0104.2;0.491226,MA0047.2;0.973066,MA0112.2;4.7367,MA0065.2;5.89283,MA0150.1;0.744617,MA0151.1;0,MA0152.1;0.902317,MA0153.1;1.43021,MA0154.1;0.312019,MA0155.1;0.711948,MA0156.1;0.669101,MA0157.1;1.09377,MA0158.1;0,MA0159.1;0.565904,MA0160.1;0.871361,MA0161.1;0,MA0162.1;9.09554,MA0163.1;2.48891,MA0164.1;1.01792,MA0080.2;0.643061,MA0018.2;0.987913,MA0099.2;0.902716,MA0079.2;32.3572,MA0102.2;1.88331,MA0258.1;1.29138,MA0259.1;0.575594,MA0442.1;0}}
|full_id=C3203_testicular_Mast_H9_Eosinophils_iPS_immature_gall
|id=C3203
|ontology_enrichment_celltype=CL:0002319!4.80e-08!25
|ontology_enrichment_disease=DOID:0050687!1.99e-08!143;DOID:305!8.63e-08!106
|ontology_enrichment_uberon=UBERON:0005743!5.13e-22!86;UBERON:0000073!2.28e-21!94;UBERON:0001016!2.28e-21!94;UBERON:0001017!4.33e-21!82;UBERON:0002346!6.28e-17!90;UBERON:0003075!7.67e-17!86;UBERON:0007284!7.67e-17!86;UBERON:0000955!1.22e-16!69;UBERON:0006238!1.22e-16!69;UBERON:0001049!1.46e-16!57;UBERON:0005068!1.46e-16!57;UBERON:0006241!1.46e-16!57;UBERON:0007135!1.46e-16!57;UBERON:0000924!2.19e-15!173;UBERON:0006601!2.19e-15!173;UBERON:0004121!3.97e-15!169;UBERON:0000062!1.29e-14!511;UBERON:0000033!1.70e-14!123;UBERON:0002616!2.98e-14!59;UBERON:0000153!3.11e-14!129;UBERON:0007811!3.11e-14!129;UBERON:0003056!5.19e-14!61;UBERON:0001893!9.66e-13!34;UBERON:0001869!1.39e-12!32;UBERON:0002780!1.51e-12!41;UBERON:0001890!1.51e-12!41;UBERON:0006240!1.51e-12!41;UBERON:0003080!2.30e-12!42;UBERON:0002020!2.47e-12!34;UBERON:0003528!2.47e-12!34;UBERON:0002791!2.68e-12!33;UBERON:0000922!6.49e-12!612;UBERON:0000956!1.71e-11!25;UBERON:0000203!1.71e-11!25;UBERON:0007023!1.47e-10!115;UBERON:0002619!1.97e-10!22;UBERON:0001950!4.60e-10!20;UBERON:0002050!1.20e-09!605;UBERON:0005423!1.20e-09!605;UBERON:0000923!1.29e-09!604;UBERON:0005291!1.29e-09!604;UBERON:0006598!1.29e-09!604;UBERON:0002532!1.29e-09!604;UBERON:0000064!3.50e-09!219
}}

Latest revision as of 12:21, 17 September 2013


Full id: C3203_testicular_Mast_H9_Eosinophils_iPS_immature_gall



Phase1 CAGE Peaks

Hg19::chr11:77184963..77185028,-p2@PAK1
Hg19::chr11:77185029..77185043,-p9@PAK1
Hg19::chr11:77185057..77185070,-p13@PAK1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
neural cell4.48e-0825
germ line cell8.52e-077
germ cell8.52e-077
Uber Anatomy
Ontology termp-valuen
central nervous system4.13e-2281
nervous system1.26e-2189
neural tube1.93e-2056
neural rod1.93e-2056
future spinal cord1.93e-2056
neural keel1.93e-2056
regional part of nervous system1.64e-1953
regional part of brain1.64e-1953
brain5.34e-1868
future brain5.34e-1868
organ system subdivision5.74e-17223
neural plate1.40e-1582
presumptive neural plate1.40e-1582
neurectoderm4.18e-1586
telencephalon1.10e-1434
regional part of forebrain1.29e-1441
forebrain1.29e-1441
anterior neural tube1.29e-1441
future forebrain1.29e-1441
cerebral hemisphere3.42e-1432
brain grey matter3.46e-1434
gray matter3.46e-1434
regional part of telencephalon1.13e-1332
pre-chordal neural plate3.37e-1361
cerebral cortex5.93e-1325
pallium5.93e-1325
ecto-epithelium6.11e-13104
regional part of cerebral cortex4.13e-1222
ectoderm-derived structure5.52e-12171
ectoderm5.52e-12171
presumptive ectoderm5.52e-12171
organ7.64e-12503
neocortex2.41e-1120
embryo8.16e-09592
adult organism1.31e-08114
organ part4.21e-08218
posterior neural tube4.03e-0715
chordal neural plate4.03e-0715
developing anatomical structure9.00e-07581
gastrointestinal system9.36e-0725
structure with developmental contribution from neural crest9.82e-07132
Disease
Ontology termp-valuen
cell type cancer1.17e-09143
carcinoma8.68e-09106


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.708947
MA0004.10.826076
MA0006.10.639288
MA0007.10.804807
MA0009.11.3275
MA0014.10.377374
MA0017.10.686276
MA0019.10.990656
MA0024.11.21731
MA0025.11.46617
MA0027.12.95767
MA0028.10.658629
MA0029.11.23771
MA0030.11.22561
MA0031.11.15713
MA0038.10.94098
MA0040.11.24388
MA0041.10.847069
MA0042.10.810843
MA0043.11.32783
MA0046.11.31611
MA0048.11.62115
MA0050.10.81185
MA0051.10.936307
MA0052.11.24796
MA0055.10.190716
MA0056.10
MA0057.110.104
MA0058.10.716037
MA0059.10.714521
MA0060.10.492218
MA0061.10.456531
MA0063.10
MA0066.10.941452
MA0067.11.65513
MA0068.10.405474
MA0069.11.31207
MA0070.11.30033
MA0071.10.897953
MA0072.11.29561
MA0073.113.9778
MA0074.10.935474
MA0076.10.734647
MA0077.11.28751
MA0078.11.04495
MA0081.10.714712
MA0083.11.33535
MA0084.11.84562
MA0087.11.29304
MA0088.11.31954
MA0089.10
MA0090.10.751469
MA0091.10.829044
MA0092.10.785956
MA0093.10.642957
MA0095.10
MA0098.10
MA0100.10.956299
MA0101.10.646932
MA0103.10.628063
MA0105.10.31555
MA0106.10.986396
MA0107.10.556367
MA0108.21.15387
MA0109.10
MA0111.10.767139
MA0113.11.00436
MA0114.13.41476
MA0115.11.57693
MA0116.10.560723
MA0117.11.36676
MA0119.10.695578
MA0122.11.39371
MA0124.11.53432
MA0125.11.44766
MA0130.10
MA0131.11.06461
MA0132.10
MA0133.10
MA0135.11.35921
MA0136.10.948776
MA0139.12.91906
MA0140.10.894983
MA0141.10.712476
MA0142.11.12317
MA0143.11.00455
MA0144.10.531867
MA0145.11.37817
MA0146.10.707589
MA0147.10.565108
MA0148.10.854239
MA0149.10.884158
MA0062.20.449458
MA0035.20.894194
MA0039.22.74132
MA0138.21.04628
MA0002.21.20011
MA0137.20.666381
MA0104.20.491226
MA0047.20.973066
MA0112.24.7367
MA0065.25.89283
MA0150.10.744617
MA0151.10
MA0152.10.902317
MA0153.11.43021
MA0154.10.312019
MA0155.10.711948
MA0156.10.669101
MA0157.11.09377
MA0158.10
MA0159.10.565904
MA0160.10.871361
MA0161.10
MA0162.19.09554
MA0163.12.48891
MA0164.11.01792
MA0080.20.643061
MA0018.20.987913
MA0099.20.902716
MA0079.232.3572
MA0102.21.88331
MA0258.11.29138
MA0259.10.575594
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
ATF3#467322.46317452600878.81932387510763e-050.00129292724058445
CCNT2#90536.336201576962630.003930750035764890.0189286058182059
CEBPB#105137.971147625824820.001974187055288560.0114973580475816
CTCF#1066435.360256373075030.0064925092527670.0278480091112462
CTCFL#140690319.74647435897440.0001298372005551160.00171234592609873
E2F6#187635.017155731697390.00791769806886330.0320684273874976
EGR1#195834.988179094810140.008056488137383440.0319260696103278
ELF1#199734.258097958807540.01295179875054610.0460312022632643
FOSL2#2355211.28680040304110.0100534586973120.0376590930342729
HMGN3#932438.178547723350590.001827766942164210.0108380259849366
IRF4#3662321.91451268674419.49854535978121e-050.00136172763051502
JUN#3725312.51282919233630.0005103313992726250.00443157071660711
JUND#372736.994663941871030.002921845042734990.0156233142749437
MEF2A#4205212.4954872730960.008235029478029740.0324758616341029
MYC#460935.22228187160940.007020843755740150.0293358632128724
NFKB1#479035.488063424193840.006049381815655430.0268698757047267
RAD21#5885310.35503389545630.0009004912073565420.00662112089588214
SIN3A#2594235.408884726815140.006318961977991520.0275586115179127
SMC3#9126315.04493284493280.0002935825420371870.00308155448319816
USF1#739136.361499277207960.00388404057290560.0189615908658761
ZBTB7A#5134137.35190930787590.002516255860282270.0139688112364864
ZEB1#6935316.88843201754390.0002075486917327580.00242110776453451
ZNF263#1012738.221841637010680.001799043925565870.0108972479145212



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C3203&oldid=3070320"