MCL coexpression mm9:80: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=-0.0147521206344616,-0.0229505717571201,-0.0237893074499082,-0.0202425134854703,-0.0237893074499082,-0.0237893074499082,-0.0237893074499082,0.0829157334708696,0.0284881852084259,0.153051003293815,0.0744011558555248,0.0987902736023022,0.0490875123247565,0.0329095270093541,0.528905268009501,0.894035717989551,0.688426524163634,0.417906057472371,0.411966277817186,0.453169362167477,-0.016448105400721,-0.0211368782179831,-0.0231390888081933,-0.022541788371708,-0.0237893074499082,-0.0237893074499082,-0.0237893074499082,-0.0237893074499082,-0.0233018525575379,-0.0237893074499082,-0.0237893074499082,-0.019656548007727,-0.0211029855332517,-0.0237893074499082,-0.0148352627428241,-0.0202293751116501,-0.00349659318060545,0.0396474516961638,0.0378101116693904,0.0779413486897718,0.105155552238242,0.0455913663446358,0.148176291055855,0.128795157605967,0.0985177946565193,-0.00937465065442678,-0.0205505582308484,-0.0216700676304788,-0.0214335953856937,-0.0225018210903153,-0.0218244573115106,-0.0237893074499082,0.0107806527760381,-0.019204528137129,-0.00520131417477987,0.0485026287220211,0.375123838352831,0.063258305314541,-0.0217243063388246,-0.0237893074499082,-0.0224137768739053,-0.0213364658516828,-0.019143345301588,-0.0219910450104187,-0.0218628196908302,-0.0222853201615623,-0.0217395488644729,-0.0212809585119043,-0.023236443513355,-0.0237893074499082,-0.021735816789926,-0.0174531282226872,-0.0223648607084109,-0.0237893074499082,-0.0235328602428741,-0.0237893074499082,-0.021708927588391,-0.0237893074499082,-0.0218375687331587,-0.0234421926197197,-0.0232987419846429,-0.0237893074499082,-0.0224095309495216,0.0156176341249107,0.0615031332089757,-0.0169501403093388,-0.0217178055492062,-0.02331039819082,0.116172178733632,0.0805027990162026,0.457445576666109,0.12458534831705,-0.022335746990689,0.0227080467297731,0.0896433465427934,0.18980668967311,-0.0196186453940452,0.287881218408406,0.311696448365937,0.386349551638219,-0.00881041405865242,-0.0120370222507366,-0.0166926619686434,-0.0237893074499082,-0.0216831229998709,-0.0237893074499082,-0.0237893074499082,0.433163114904684,0.0525317134773665,-0.016306275640744,-0.0158591768243019,-0.0110666313057642,-0.0148270809683169,-0.0090522748363442,0.0584232539898379,-0.0113538632434656,0.0140508195110384,0.021566106014315,0.0360661340890931,0.298172562576241,0.407916171844811,1.57617604968526,0.0490234608521144,0.0742926664744675,0.0125104452235809,0.0843945735840052,-0.00633461169105079,-0.0164105335448257,0.00475367182609619,-0.0160634545998891,-0.0151613501315863,0.0134294794322543,-0.0149762226026689,-0.0177279448350545,-0.0190285555958448,-0.00946718545164956,0.12934803685618,0.0346084782330091,0.0109775755100705,0.101618432640374,0.0874187647791863,-0.0185710177626955,-0.0021206432731295,0.143834070481434,0.102362806029312,0.107514057964226,0.0883666771766167,0.121749991853785,-0.0179517810141563,0.0523607405052252,0.00414891960965528,-0.00527434666678079,0.12142203790583,0.198911611823091,0.0685827336009914,0.00487075275923429,-0.0183503436778775,-0.0126814308029586,0.00869528613101735,0.0299558800922163,0.0203697853364273,0.0407310001039013,0.0369641469960584,0.0157990059174493,0.143326959710484,0.217168863261527,0.0411256752716428,0.425685415096916,0.038689801573359,0.302356398937139,0.0268453879683796,-0.00831044925181897,0.024145568545997,-0.000462979394014327,-0.0192961289117952,0.00533838858336519,0.0268376804016215,-0.0110350179047031,0.0271894323739281,0.200744538463139,0.000842145383961705,0.0753927199261732,0.051813323884513,-0.00568573473127831,0.072474152756645,-0.0167968842609025,0.0981058777584891,0.109199629961886,0.0284503982858076,0.0382509347908935,0.0537923290587888,0.00918853073213909,0.0116751441225563,0.0565843334307069,0.0219381869286469,0.0607616057139537,0.119233694949486,0.163954072733274,0.0490558029495882,0.0213739560727534,0.0261328472146715,-0.0131982754641086,-0.0237893074499082,-0.0152582024816337,-0.00803822941264515,0.14414191588195,-0.0119400807472684,-0.0158432693505307,-0.0212470046884633,-0.0189734643756849,0.1110025471396,-0.00147802963866649,0.176513973784427,0.105261927386891,0.0191322727229378,0.0157070082021916,-0.0106340218117087,-0.0168692735154565,0.0225922832679485,-0.0224027257245765,-0.00013109529490587,0.0797381504670007,0.0373019490909561,0.0271739356152349,0.00560485389920315,0.0875517513452861,0.0165180823093065,0.147034476737877,0.0632430210421143,0.0591352721013043,0.081614331218717,0.0180680717586052,-0.00958914868970836,-0.00562957274822878,0.0188324948791144,0.0377325885019523,-0.0172225907965738,-0.0160373690900576,0.0206928110241041,0.0361796433715071,0.186529172327688,0.16828001276552,0.22713153166429,0.0476783725860448,0.111543063727198,0.0969052913250448,0.151705336582093,0.191595364250118,0.171362366793683,0.129568253799001,0.0454372555224398,0.0417199443097535,0.0195550709856426,0.0501372172246526,-0.0083229918500546,-0.00793688887972667,-0.0166265703165731,0.00737294250573821,-0.00593554604344436,-0.00651037705006103,-0.0105095213930033,0.00589426810485264,0.0114927808704742,0.00730825704867125,-0.0197552457318041,0.0102610016353641,-0.00264939622478771,0.0701614401052153,-0.0121483004412297,-0.0199666948141262,-0.00308016165754025,0.0154776247329328,0.00221751247160212,-0.0136770598013844,0.111240457420908,-0.00757816713737791,-0.011780294563057,0.28773173068561,0.135743039956118,0.0555386632598129,-0.00148643695071464,0.0437620108817039,0.0665240413317317,0.000172889334640958,-0.0073553976863695,-0.0113384865042304,0.258254507256021,0.0573178089931164,0.0880000938509398,0.0526524689066659,0.000274331322602457,0.0172844958215189,0.00209646005335245,0.653231657286683,0.00518569428946151,0.0332140758937054,0.0365636857613796,0.173942535098933,0.012215783159541,0.206372750832484,0.0199498658028664,-0.00383665433527617,-0.00849715376842364,0.286561214336481,0.0555806546909677,-0.0151792199634398,-0.0225022724159828,-0.00553492193537717,0.00664933179859204,0.0817237535602102,0.0757726519003242,0.0153150457492835,-0.00563346792250546,0.00929187763206376,0.0316648337091964,0.0289069090360721,-0.0183205022257613,-0.00178639925116605,0.0137093049082758,0.0555647853244239,0.0590910334412765,0.000902866365477997,0.015501769050222,0.0216003862772435,0.131711769947363,-0.0106911248737346,0.0962573891461941,0.0271590714661558,0.0304700313501016,0.0307379758023313,-0.0136267990462177,0.0422214826277484,-0.0203691070428837,0.0165722161544936,-0.00897567089089899,0.14868738861109,0.0717557374158574,-0.0135751028242439,0.369967884947184,0.377120210505602,0.449254726582828,0.614818468160809,0.189573356153552,0.349304714639971,0.334910367022586,0.29669932527489,0.196422047246656,0.14231425508006,0.159166978524375,0.0355682731093473,-0.00679950065511463,0.22856843958181,0.0448040516483948,0.0348588068209749,0.0636299404551409,0.0857585792377476,0.0679722066655762,0.071740771661387,0.0638563709562694,0.0813760342130718,0.12887526146538,0.0810532211904539,0.100068641860365,0.0922983283060822,0.0848702826916449,0.0755670253168409,0.105293170411168,0.0820122954339836,0.145089560992545,0.15283048689936,0.0888546569022028,0.0996233982828403,0.0898778140227526,0.0830359758357305,0.0774152718009557,0.156023413005836,0.0981192803021409,0.0853249018428084,0.0854222416392508,0.0963031528498468,0.10825042643617,0.0734608524373776,0.0698535059613177,-0.00279242103481868,0.110137925880487,0.100766320933724,0.169916951451493,0.0718429132661909,0.0775087327145541|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.0527413783866199,0,0.0913378685245542,0,0.0642873521037868,0,0.0307758671353405,0.476927019538102,0.873855643620971,0.653001046842843,0.383739940086769,0.349088981842632,0.430970888944806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0975327392940296,0.0801767602395476,0,0,0,0,0,0,0,0,0,0,0,0.331656786275404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0296093240970958,0,0,0,0.0889077662030289,0.0611293222874226,0.437621671121112,0,0,0,0,0.160776625956154,0,0.267676534152945,0.250263338628353,0.313871167694032,0,0,0,0,0,0,0,0.37478619516416,0,0,0,0,0,0,0.0482820047261801,0,0,0,0,0.257398772651646,0.323088583268711,1.55522771934354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0805105854221362,0,0,0.0829439327499637,0.0531247310291112,0,0,0.114414017937594,0.0806659819199616,0.0523528812100954,0.074598306112166,0.0999233952154288,0,0,0,0,0,0.12977112683364,0,0,0,0,0,0,0,0,0,0,0.0623063220167371,0.0907988888537607,0,0.380425460431626,0,0.219235970178219,0.0338533374824575,0,0,0,0,0,0,0,0,0.165681471080581,0,0,0,0,0,0,0.0621896383792647,0.0788034163803455,0,0,0,0,0,0.046982063026719,0,0,0.0769870445726752,0.125271247815307,0.0266298923127834,0,0,0,0,0,0,0.0880872011895838,0,0,0,0,0.0652566657696677,0,0,0.095679973326646,0,0,0,0,0,0,0,0.0680912293502604,0,0,0,0.0774164737207147,0,0.086880916817156,0.0642538110976656,0.0659019793256198,0.0691813633419548,0,0,0,0,0,0,0,0,0,0.119093565942036,0.143151860801801,0.216501115071344,0,0.0873549591356574,0.0967170374333367,0.1476178069765,0.111348509539896,0.144663790035931,0.121008441369486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0719044921483595,0,0,0,0,0,0,0,0,0,0.219989036254386,0.0650059127791652,0.0254340553719351,0,0,0,0,0,0,0.236458065760817,0,0.055643654597214,0,0,0,0,0.682928309331839,0,0,0,0.0824580172145032,0,0.147550511820338,0,0,0,0.209873913294111,0,0,0,0,0,0.0677982110636083,0.0481920468563092,0,0,0,0,0,0,0,0,0,0.0230600954306637,0,0,0,0.0894177291216067,0,0.0403878614760544,0,0,0,0,0,0,0,0,0.0730404042754446,0,0,0.328278395983124,0.376754964798171,0.434359137099159,0.573990837951536,0.226621173458704,0.244374584202533,0.315432523957889,0.278900414858752,0.162308177550168,0.0950035405840828,0.117722608900654,0,0,0.17208118264908,0,0,0,0.081359932135904,0,0,0,0.0750453505157095,0.107523539997041,0.0523284672130554,0.0690411384905589,0,0.0476191773904887,0.028415348572831,0,0.0596387295197733,0.128033729919821,0.131923786075207,0.0503356816474508,0.0589368614163519,0.0637189209940499,0.0565246935033139,0.0729583017401753,0.101427320830301,0.076516481676364,0,0.0486884105045233,0.0780974029773103,0,0.0625582350728301,0,0,0.091291089277545,0.0845301845292944,0.140689222355642,0,0|gostat_on_MCL_coexpression=GO:0030020;extracellular matrix structural constituent conferring tensile strength;0.000219408547866333;12842,12843!GO:0005581;collagen;0.000219408547866333;12842,12843!GO:0005201;extracellular matrix structural constituent;0.000407180314410167;12842,12843!GO:0006817;phosphate transport;0.000407180314410167;12842,12843!GO:0006811;ion transport;0.000444954605153175;12842,11733,12843!GO:0044420;extracellular matrix part;0.00051346196154875;12842,12843!GO:0015698;inorganic anion transport;0.00102119917903084;12842,12843!GO:0006820;anion transport;0.00125647242166672;12842,12843!GO:0005578;proteinaceous extracellular matrix;0.00314956257399098;12842,12843!GO:0006810;transport;0.00764472659050462;12842,11733,12843!GO:0051234;establishment of localization;0.00764472659050462;12842,11733,12843!GO:0051179;localization;0.00890739443574867;12842,11733,12843!GO:0022610;biological adhesion;0.00890739443574867;12842,12843!GO:0007155;cell adhesion;0.00890739443574867;12842,12843!GO:0016529;sarcoplasmic reticulum;0.0107682082345419;11733!GO:0016528;sarcoplasm;0.0117751456770807;11733!|ontology_enrichment_celltype=CL:0000553!1.82e-07!6;CL:0000556!1.82e-07!6|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0002021!5.22e-10!10;UBERON:0000411!5.22e-10!10;UBERON:0001950!5.22e-10!10|tfbs_overrepresentation_for_novel_motifs=1.88437e-05,0,8.38567e-06,0.0567916,69.167,0.000818177,0.000575499,0.486914,6.95234e-07,1.92865e-16,0.000245759,0.16782,4.39608e-09,4.87828,0.0376726,0,0.00919,0.000667962,7.55703e-07,1.52875e-12,0.477699,5.36214e-13,22.4474,0.000251064,0.000124066,0.00113139,2.03155e-06,0.000140221,6.99331e-07,5.77473,0.00010117,0.0966645,7.2696e-06,4.64516e-07,3.0964e-06,1.68757e-15,3.03519e-08,34.4792,0.11071,2.66746e-08,7.14846,0.000114243,4.56051e-08,0.00448688,0,4.48134e-05,0.00378773,0.00172816,8.69765e-08,0.0214756,0.00769242,0.00170894,7.19971e-10,0.0557822,0.06128,0.00592743,0.00181103,0.977958,3.23568e-08,0.000780998,0.0190035,0.524606,0.00225749,0.00682717,36.4059,0.140679,0.367674,0.325491,5.17385,0.22542,4.44423e-06,0.00260638,0,0.253668,1.64831e-10,2.54694e-07,8.71146e-08,0.00328162,0.0756711,0.00336116,0.000484921,0.0108801,0.102644,0.902397,0.0381315,0,11.1919,1.48791e-09,0.0233913,1.99449,0.455122,0.03935,0.104602,0.0837595,6.63008e-09,0.000599497,0.000102815,0.025006,0.00379974,8.76574e-13,0.237094,0.239065,0.0505951,0.115119,0.0400952,0.000113076,0.0136226,0.0521127,0.00026812,2.4898e-06,0.0009753,0.423954,0.00023907,0.000273379,0.152624,5.00706e-05,0,6.58627e-05,4.88509,0.000102613,0.259174,0.00541326,0.0011647,0.00324368,1.02886,0.0776202,0.000665549,0.023282,0.114011,2.13238e-06,0.174328,0.0233753,0.100914,0.00721678,0.164245,22.4582,2.40698e-05,0.239564,0.138387,0.769378,0.424619,0.116877,0.291673,1.11863,0.108889,0.0160052,0.477629,0.733289,2.57471e-05,6.8898e-05,1.39159e-11,0,0.0562643,6.13985e-07,0.000999716,844.871,0.0394537,0.00230443,0.254312,2.38775e-05,0.143222,0.0379245,0.077857,1.4243e-05,0.10622,0.0239779,0.000409073,0.0401721,0|tfbs_overrepresentation_jaspar=MA0003.1;0,MA0004.1;0.0571814,MA0006.1;2.4874e-06,MA0007.1;0.000421139,MA0009.1;0.0270547,MA0014.1;0,MA0017.1;0.000279253,MA0019.1;0.0286304,MA0024.1;0.0194193,MA0025.1;0.0989912,MA0027.1;1.24237,MA0028.1;3.94058e-06,MA0029.1;0.0162428,MA0030.1;0.0171614,MA0031.1;0.0125925,MA0038.1;31.1052,MA0040.1;0.121956,MA0041.1;0.259593,MA0042.1;0.0515872,MA0043.1;0.188037,MA0046.1;0.138779,MA0048.1;3.26425e-14,MA0050.1;2.82468,MA0051.1;1.45171,MA0052.1;0.0312458,MA0055.1;0,MA0056.1;0,MA0057.1;3.60519e-12,MA0058.1;0.00118663,MA0059.1;6.35943e-05,MA0060.1;1.48733e-09,MA0061.1;1.03694e-08,MA0063.1;0,MA0066.1;0.0252006,MA0067.1;0.151952,MA0068.1;8.63033e-08,MA0069.1;1.26769,MA0070.1;0.0292907,MA0071.1;0.0935732,MA0072.1;0.115292,MA0073.1;0,MA0074.1;0.00393645,MA0076.1;1.61613e-05,MA0077.1;0.101277,MA0078.1;0.0456794,MA0081.1;1.10041e-05,MA0083.1;0.0500776,MA0084.1;0.365435,MA0087.1;0.15167,MA0088.1;7.0109e-12,MA0089.1;0,MA0090.1;0.0014177,MA0091.1;0.000803096,MA0092.1;0.00142818,MA0093.1;0.00636019,MA0095.1;0,MA0098.1;0,MA0100.1;0.00325426,MA0101.1;6.9641e-06,MA0103.1;1.18051e-05,MA0105.1;8.80771e-09,MA0106.1;0.00236242,MA0107.1;6.44235e-07,MA0108.2;0.00660706,MA0109.1;0,MA0111.1;3.57257e-05,MA0113.1;0.00157613,MA0114.1;1.68215e-07,MA0115.1;0.0511153,MA0116.1;1.55552e-07,MA0117.1;0.0422545,MA0119.1;0.179277,MA0122.1;0.047582,MA0124.1;0.12515,MA0125.1;0.0922413,MA0130.1;0,MA0131.1;0.00485349,MA0132.1;0,MA0133.1;0,MA0135.1;0.0614569,MA0136.1;0.000721419,MA0139.1;3.20127e-09,MA0140.1;0.000405899,MA0141.1;0.000164216,MA0142.1;0.0541913,MA0143.1;0.00200122,MA0144.1;1.08446e-08,MA0145.1;1.59114e-15,MA0146.1;0,MA0147.1;2.22185e-08,MA0148.1;0.0713069,MA0149.1;8.34404e-06,MA0062.2;4.69184e-12,MA0035.2;0.591345,MA0039.2;0,MA0138.2;0.00441821,MA0002.2;0.00798804,MA0137.2;2.20138e-05,MA0104.2;1.15514e-08,MA0047.2;0.0728085,MA0112.2;3.64839e-12,MA0065.2;3.87824e-12,MA0150.1;0.00218175,MA0151.1;0,MA0152.1;114.907,MA0153.1;0.510727,MA0154.1;1.00573e-09,MA0155.1;1.70204e-14,MA0156.1;1.12906e-06,MA0157.1;0.955432,MA0158.1;0,MA0159.1;6.71089e-07,MA0160.1;0.00437163,MA0161.1;0,MA0162.1;0,MA0163.1;0,MA0164.1;0.000725959,MA0080.2;0.00123265,MA0018.2;0.000856501,MA0099.2;0.0040944,MA0079.2;0,MA0102.2;0.40571,MA0258.1;9.39812e-05,MA0259.1;7.59879,MA0442.1;0}} | ||
|coexpression_dpi_cluster_scores_mean=-0.0147521206344616,-0.0229505717571201,-0.0237893074499082,-0.0202425134854703,-0.0237893074499082,-0.0237893074499082,-0.0237893074499082,0.0829157334708696,0.0284881852084259,0.153051003293815,0.0744011558555248,0.0987902736023022,0.0490875123247565,0.0329095270093541,0.528905268009501,0.894035717989551,0.688426524163634,0.417906057472371,0.411966277817186,0.453169362167477,-0.016448105400721,-0.0211368782179831,-0.0231390888081933,-0.022541788371708,-0.0237893074499082,-0.0237893074499082,-0.0237893074499082,-0.0237893074499082,-0.0233018525575379,-0.0237893074499082,-0.0237893074499082,-0.019656548007727,-0.0211029855332517,-0.0237893074499082,-0.0148352627428241,-0.0202293751116501,-0.00349659318060545,0.0396474516961638,0.0378101116693904,0.0779413486897718,0.105155552238242,0.0455913663446358,0.148176291055855,0.128795157605967,0.0985177946565193,-0.00937465065442678,-0.0205505582308484,-0.0216700676304788,-0.0214335953856937,-0.0225018210903153,-0.0218244573115106,-0.0237893074499082,0.0107806527760381,-0.019204528137129,-0.00520131417477987,0.0485026287220211,0.375123838352831,0.063258305314541,-0.0217243063388246,-0.0237893074499082,-0.0224137768739053,-0.0213364658516828,-0.019143345301588,-0.0219910450104187,-0.0218628196908302,-0.0222853201615623,-0.0217395488644729,-0.0212809585119043,-0.023236443513355,-0.0237893074499082,-0.021735816789926,-0.0174531282226872,-0.0223648607084109,-0.0237893074499082,-0.0235328602428741,-0.0237893074499082,-0.021708927588391,-0.0237893074499082,-0.0218375687331587,-0.0234421926197197,-0.0232987419846429,-0.0237893074499082,-0.0224095309495216,0.0156176341249107,0.0615031332089757,-0.0169501403093388,-0.0217178055492062,-0.02331039819082,0.116172178733632,0.0805027990162026,0.457445576666109,0.12458534831705,-0.022335746990689,0.0227080467297731,0.0896433465427934,0.18980668967311,-0.0196186453940452,0.287881218408406,0.311696448365937,0.386349551638219,-0.00881041405865242,-0.0120370222507366,-0.0166926619686434,-0.0237893074499082,-0.0216831229998709,-0.0237893074499082,-0.0237893074499082,0.433163114904684,0.0525317134773665,-0.016306275640744,-0.0158591768243019,-0.0110666313057642,-0.0148270809683169,-0.0090522748363442,0.0584232539898379,-0.0113538632434656,0.0140508195110384,0.021566106014315,0.0360661340890931,0.298172562576241,0.407916171844811,1.57617604968526,0.0490234608521144,0.0742926664744675,0.0125104452235809,0.0843945735840052,-0.00633461169105079,-0.0164105335448257,0.00475367182609619,-0.0160634545998891,-0.0151613501315863,0.0134294794322543,-0.0149762226026689,-0.0177279448350545,-0.0190285555958448,-0.00946718545164956,0.12934803685618,0.0346084782330091,0.0109775755100705,0.101618432640374,0.0874187647791863,-0.0185710177626955,-0.0021206432731295,0.143834070481434,0.102362806029312,0.107514057964226,0.0883666771766167,0.121749991853785,-0.0179517810141563,0.0523607405052252,0.00414891960965528,-0.00527434666678079,0.12142203790583,0.198911611823091,0.0685827336009914,0.00487075275923429,-0.0183503436778775,-0.0126814308029586,0.00869528613101735,0.0299558800922163,0.0203697853364273,0.0407310001039013,0.0369641469960584,0.0157990059174493,0.143326959710484,0.217168863261527,0.0411256752716428,0.425685415096916,0.038689801573359,0.302356398937139,0.0268453879683796,-0.00831044925181897,0.024145568545997,-0.000462979394014327,-0.0192961289117952,0.00533838858336519,0.0268376804016215,-0.0110350179047031,0.0271894323739281,0.200744538463139,0.000842145383961705,0.0753927199261732,0.051813323884513,-0.00568573473127831,0.072474152756645,-0.0167968842609025,0.0981058777584891,0.109199629961886,0.0284503982858076,0.0382509347908935,0.0537923290587888,0.00918853073213909,0.0116751441225563,0.0565843334307069,0.0219381869286469,0.0607616057139537,0.119233694949486,0.163954072733274,0.0490558029495882,0.0213739560727534,0.0261328472146715,-0.0131982754641086,-0.0237893074499082,-0.0152582024816337,-0.00803822941264515,0.14414191588195,-0.0119400807472684,-0.0158432693505307,-0.0212470046884633,-0.0189734643756849,0.1110025471396,-0.00147802963866649,0.176513973784427,0.105261927386891,0.0191322727229378,0.0157070082021916,-0.0106340218117087,-0.0168692735154565,0.0225922832679485,-0.0224027257245765,-0.00013109529490587,0.0797381504670007,0.0373019490909561,0.0271739356152349,0.00560485389920315,0.0875517513452861,0.0165180823093065,0.147034476737877,0.0632430210421143,0.0591352721013043,0.081614331218717,0.0180680717586052,-0.00958914868970836,-0.00562957274822878,0.0188324948791144,0.0377325885019523,-0.0172225907965738,-0.0160373690900576,0.0206928110241041,0.0361796433715071,0.186529172327688,0.16828001276552,0.22713153166429,0.0476783725860448,0.111543063727198,0.0969052913250448,0.151705336582093,0.191595364250118,0.171362366793683,0.129568253799001,0.0454372555224398,0.0417199443097535,0.0195550709856426,0.0501372172246526,-0.0083229918500546,-0.00793688887972667,-0.0166265703165731,0.00737294250573821,-0.00593554604344436,-0.00651037705006103,-0.0105095213930033,0.00589426810485264,0.0114927808704742,0.00730825704867125,-0.0197552457318041,0.0102610016353641,-0.00264939622478771,0.0701614401052153,-0.0121483004412297,-0.0199666948141262,-0.00308016165754025,0.0154776247329328,0.00221751247160212,-0.0136770598013844,0.111240457420908,-0.00757816713737791,-0.011780294563057,0.28773173068561,0.135743039956118,0.0555386632598129,-0.00148643695071464,0.0437620108817039,0.0665240413317317,0.000172889334640958,-0.0073553976863695,-0.0113384865042304,0.258254507256021,0.0573178089931164,0.0880000938509398,0.0526524689066659,0.000274331322602457,0.0172844958215189,0.00209646005335245,0.653231657286683,0.00518569428946151,0.0332140758937054,0.0365636857613796,0.173942535098933,0.012215783159541,0.206372750832484,0.0199498658028664,-0.00383665433527617,-0.00849715376842364,0.286561214336481,0.0555806546909677,-0.0151792199634398,-0.0225022724159828,-0.00553492193537717,0.00664933179859204,0.0817237535602102,0.0757726519003242,0.0153150457492835,-0.00563346792250546,0.00929187763206376,0.0316648337091964,0.0289069090360721,-0.0183205022257613,-0.00178639925116605,0.0137093049082758,0.0555647853244239,0.0590910334412765,0.000902866365477997,0.015501769050222,0.0216003862772435,0.131711769947363,-0.0106911248737346,0.0962573891461941,0.0271590714661558,0.0304700313501016,0.0307379758023313,-0.0136267990462177,0.0422214826277484,-0.0203691070428837,0.0165722161544936,-0.00897567089089899,0.14868738861109,0.0717557374158574,-0.0135751028242439,0.369967884947184,0.377120210505602,0.449254726582828,0.614818468160809,0.189573356153552,0.349304714639971,0.334910367022586,0.29669932527489,0.196422047246656,0.14231425508006,0.159166978524375,0.0355682731093473,-0.00679950065511463,0.22856843958181,0.0448040516483948,0.0348588068209749,0.0636299404551409,0.0857585792377476,0.0679722066655762,0.071740771661387,0.0638563709562694,0.0813760342130718,0.12887526146538,0.0810532211904539,0.100068641860365,0.0922983283060822,0.0848702826916449,0.0755670253168409,0.105293170411168,0.0820122954339836,0.145089560992545,0.15283048689936,0.0888546569022028,0.0996233982828403,0.0898778140227526,0.0830359758357305,0.0774152718009557,0.156023413005836,0.0981192803021409,0.0853249018428084,0.0854222416392508,0.0963031528498468,0.10825042643617,0.0734608524373776,0.0698535059613177,-0.00279242103481868,0.110137925880487,0.100766320933724,0.169916951451493,0.0718429132661909,0.0775087327145541 | |||
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.0527413783866199,0,0.0913378685245542,0,0.0642873521037868,0,0.0307758671353405,0.476927019538102,0.873855643620971,0.653001046842843,0.383739940086769,0.349088981842632,0.430970888944806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0975327392940296,0.0801767602395476,0,0,0,0,0,0,0,0,0,0,0,0.331656786275404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0296093240970958,0,0,0,0.0889077662030289,0.0611293222874226,0.437621671121112,0,0,0,0,0.160776625956154,0,0.267676534152945,0.250263338628353,0.313871167694032,0,0,0,0,0,0,0,0.37478619516416,0,0,0,0,0,0,0.0482820047261801,0,0,0,0,0.257398772651646,0.323088583268711,1.55522771934354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0805105854221362,0,0,0.0829439327499637,0.0531247310291112,0,0,0.114414017937594,0.0806659819199616,0.0523528812100954,0.074598306112166,0.0999233952154288,0,0,0,0,0,0.12977112683364,0,0,0,0,0,0,0,0,0,0,0.0623063220167371,0.0907988888537607,0,0.380425460431626,0,0.219235970178219,0.0338533374824575,0,0,0,0,0,0,0,0,0.165681471080581,0,0,0,0,0,0,0.0621896383792647,0.0788034163803455,0,0,0,0,0,0.046982063026719,0,0,0.0769870445726752,0.125271247815307,0.0266298923127834,0,0,0,0,0,0,0.0880872011895838,0,0,0,0,0.0652566657696677,0,0,0.095679973326646,0,0,0,0,0,0,0,0.0680912293502604,0,0,0,0.0774164737207147,0,0.086880916817156,0.0642538110976656,0.0659019793256198,0.0691813633419548,0,0,0,0,0,0,0,0,0,0.119093565942036,0.143151860801801,0.216501115071344,0,0.0873549591356574,0.0967170374333367,0.1476178069765,0.111348509539896,0.144663790035931,0.121008441369486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0719044921483595,0,0,0,0,0,0,0,0,0,0.219989036254386,0.0650059127791652,0.0254340553719351,0,0,0,0,0,0,0.236458065760817,0,0.055643654597214,0,0,0,0,0.682928309331839,0,0,0,0.0824580172145032,0,0.147550511820338,0,0,0,0.209873913294111,0,0,0,0,0,0.0677982110636083,0.0481920468563092,0,0,0,0,0,0,0,0,0,0.0230600954306637,0,0,0,0.0894177291216067,0,0.0403878614760544,0,0,0,0,0,0,0,0,0.0730404042754446,0,0,0.328278395983124,0.376754964798171,0.434359137099159,0.573990837951536,0.226621173458704,0.244374584202533,0.315432523957889,0.278900414858752,0.162308177550168,0.0950035405840828,0.117722608900654,0,0,0.17208118264908,0,0,0,0.081359932135904,0,0,0,0.0750453505157095,0.107523539997041,0.0523284672130554,0.0690411384905589,0,0.0476191773904887,0.028415348572831,0,0.0596387295197733,0.128033729919821,0.131923786075207,0.0503356816474508,0.0589368614163519,0.0637189209940499,0.0565246935033139,0.0729583017401753,0.101427320830301,0.076516481676364,0,0.0486884105045233,0.0780974029773103,0,0.0625582350728301,0,0,0.091291089277545,0.0845301845292944,0.140689222355642,0,0 | |||
|gostat_on_MCL_coexpression=GO:0030020;extracellular matrix structural constituent conferring tensile strength;0.000219408547866333;12842,12843!GO:0005581;collagen;0.000219408547866333;12842,12843!GO:0005201;extracellular matrix structural constituent;0.000407180314410167;12842,12843!GO:0006817;phosphate transport;0.000407180314410167;12842,12843!GO:0006811;ion transport;0.000444954605153175;12842,11733,12843!GO:0044420;extracellular matrix part;0.00051346196154875;12842,12843!GO:0015698;inorganic anion transport;0.00102119917903084;12842,12843!GO:0006820;anion transport;0.00125647242166672;12842,12843!GO:0005578;proteinaceous extracellular matrix;0.00314956257399098;12842,12843!GO:0006810;transport;0.00764472659050462;12842,11733,12843!GO:0051234;establishment of localization;0.00764472659050462;12842,11733,12843!GO:0051179;localization;0.00890739443574867;12842,11733,12843!GO:0022610;biological adhesion;0.00890739443574867;12842,12843!GO:0007155;cell adhesion;0.00890739443574867;12842,12843!GO:0016529;sarcoplasmic reticulum;0.0107682082345419;11733!GO:0016528;sarcoplasm;0.0117751456770807;11733! | |||
|ontology_enrichment_celltype=CL:0000553!1.82e-07!6;CL:0000556!1.82e-07!6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0002021!5.22e-10!10;UBERON:0000411!5.22e-10!10;UBERON:0001950!5.22e-10!10 | |||
}} |
Latest revision as of 14:39, 17 September 2013
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0030020 | extracellular matrix structural constituent conferring tensile strength | 0.000219408547866333 |
GO:0005581 | collagen | 0.000219408547866333 |
GO:0005201 | extracellular matrix structural constituent | 0.000407180314410167 |
GO:0006817 | phosphate transport | 0.000407180314410167 |
GO:0006811 | ion transport | 0.000444954605153175 |
GO:0044420 | extracellular matrix part | 0.00051346196154875 |
GO:0015698 | inorganic anion transport | 0.00102119917903084 |
GO:0006820 | anion transport | 0.00125647242166672 |
GO:0005578 | proteinaceous extracellular matrix | 0.00314956257399098 |
GO:0006810 | transport | 0.00764472659050462 |
GO:0051234 | establishment of localization | 0.00764472659050462 |
GO:0051179 | localization | 0.00890739443574867 |
GO:0022610 | biological adhesion | 0.00890739443574867 |
GO:0007155 | cell adhesion | 0.00890739443574867 |
GO:0016529 | sarcoplasmic reticulum | 0.0107682082345419 |
GO:0016528 | sarcoplasm | 0.0117751456770807 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
megakaryocyte progenitor cell | 1.82e-07 | 6 |
megakaryocyte | 1.82e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 5.22e-10 | 10 |
visual cortex | 5.22e-10 | 10 |
neocortex | 5.22e-10 | 10 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0 |
MA0004.1 | 0.0571814 |
MA0006.1 | 2.4874e-06 |
MA0007.1 | 0.000421139 |
MA0009.1 | 0.0270547 |
MA0014.1 | 0 |
MA0017.1 | 0.000279253 |
MA0019.1 | 0.0286304 |
MA0024.1 | 0.0194193 |
MA0025.1 | 0.0989912 |
MA0027.1 | 1.24237 |
MA0028.1 | 3.94058e-06 |
MA0029.1 | 0.0162428 |
MA0030.1 | 0.0171614 |
MA0031.1 | 0.0125925 |
MA0038.1 | 31.1052 |
MA0040.1 | 0.121956 |
MA0041.1 | 0.259593 |
MA0042.1 | 0.0515872 |
MA0043.1 | 0.188037 |
MA0046.1 | 0.138779 |
MA0048.1 | 3.26425e-14 |
MA0050.1 | 2.82468 |
MA0051.1 | 1.45171 |
MA0052.1 | 0.0312458 |
MA0055.1 | 0 |
MA0056.1 | 0 |
MA0057.1 | 3.60519e-12 |
MA0058.1 | 0.00118663 |
MA0059.1 | 6.35943e-05 |
MA0060.1 | 1.48733e-09 |
MA0061.1 | 1.03694e-08 |
MA0063.1 | 0 |
MA0066.1 | 0.0252006 |
MA0067.1 | 0.151952 |
MA0068.1 | 8.63033e-08 |
MA0069.1 | 1.26769 |
MA0070.1 | 0.0292907 |
MA0071.1 | 0.0935732 |
MA0072.1 | 0.115292 |
MA0073.1 | 0 |
MA0074.1 | 0.00393645 |
MA0076.1 | 1.61613e-05 |
MA0077.1 | 0.101277 |
MA0078.1 | 0.0456794 |
MA0081.1 | 1.10041e-05 |
MA0083.1 | 0.0500776 |
MA0084.1 | 0.365435 |
MA0087.1 | 0.15167 |
MA0088.1 | 7.0109e-12 |
MA0089.1 | 0 |
MA0090.1 | 0.0014177 |
MA0091.1 | 0.000803096 |
MA0092.1 | 0.00142818 |
MA0093.1 | 0.00636019 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.00325426 |
MA0101.1 | 6.9641e-06 |
MA0103.1 | 1.18051e-05 |
MA0105.1 | 8.80771e-09 |
MA0106.1 | 0.00236242 |
MA0107.1 | 6.44235e-07 |
MA0108.2 | 0.00660706 |
MA0109.1 | 0 |
MA0111.1 | 3.57257e-05 |
MA0113.1 | 0.00157613 |
MA0114.1 | 1.68215e-07 |
MA0115.1 | 0.0511153 |
MA0116.1 | 1.55552e-07 |
MA0117.1 | 0.0422545 |
MA0119.1 | 0.179277 |
MA0122.1 | 0.047582 |
MA0124.1 | 0.12515 |
MA0125.1 | 0.0922413 |
MA0130.1 | 0 |
MA0131.1 | 0.00485349 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.0614569 |
MA0136.1 | 0.000721419 |
MA0139.1 | 3.20127e-09 |
MA0140.1 | 0.000405899 |
MA0141.1 | 0.000164216 |
MA0142.1 | 0.0541913 |
MA0143.1 | 0.00200122 |
MA0144.1 | 1.08446e-08 |
MA0145.1 | 1.59114e-15 |
MA0146.1 | 0 |
MA0147.1 | 2.22185e-08 |
MA0148.1 | 0.0713069 |
MA0149.1 | 8.34404e-06 |
MA0062.2 | 4.69184e-12 |
MA0035.2 | 0.591345 |
MA0039.2 | 0 |
MA0138.2 | 0.00441821 |
MA0002.2 | 0.00798804 |
MA0137.2 | 2.20138e-05 |
MA0104.2 | 1.15514e-08 |
MA0047.2 | 0.0728085 |
MA0112.2 | 3.64839e-12 |
MA0065.2 | 3.87824e-12 |
MA0150.1 | 0.00218175 |
MA0151.1 | 0 |
MA0152.1 | 114.907 |
MA0153.1 | 0.510727 |
MA0154.1 | 1.00573e-09 |
MA0155.1 | 1.70204e-14 |
MA0156.1 | 1.12906e-06 |
MA0157.1 | 0.955432 |
MA0158.1 | 0 |
MA0159.1 | 6.71089e-07 |
MA0160.1 | 0.00437163 |
MA0161.1 | 0 |
MA0162.1 | 0 |
MA0163.1 | 0 |
MA0164.1 | 0.000725959 |
MA0080.2 | 0.00123265 |
MA0018.2 | 0.000856501 |
MA0099.2 | 0.0040944 |
MA0079.2 | 0 |
MA0102.2 | 0.40571 |
MA0258.1 | 9.39812e-05 |
MA0259.1 | 7.59879 |
MA0442.1 | 0 |