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MCL coexpression mm9:98: Difference between revisions

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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0044421;extracellular region part;0.0203021860065777;13179,14205,18414,242939,21826,74199,20306,16170,21858,17392!GO:0007626;locomotory behavior;0.0203021860065777;20306,16170,18166,211323!GO:0005125;cytokine activity;0.0203021860065777;20306,16170,14205,211323!GO:0043408;regulation of MAPKKK cascade;0.0255942277618279;12389,21858!GO:0005578;proteinaceous extracellular matrix;0.0277167938224125;242939,13179,21858,17392!GO:0005615;extracellular space;0.0277167938224125;13179,14205,18414,21826,74199,20306,16170,21858,17392!GO:0000165;MAPKKK cascade;0.0277167938224125;12389,21858,211323!GO:0007610;behavior;0.0295784110470665;20306,16170,18166,211323!GO:0005102;receptor binding;0.0295784110470665;20306,16170,21858,14205,211323!GO:0045595;regulation of cell differentiation;0.0295784110470665;12389,21858,211323!GO:0007517;muscle development;0.0295784110470665;12389,12955,211323!GO:0033483;gas homeostasis;0.0295784110470665;12389!GO:0052547;regulation of peptidase activity;0.0295784110470665;12389!GO:0030857;negative regulation of epithelial cell differentiation;0.0295784110470665;12389!GO:0045908;negative regulation of vasodilation;0.0295784110470665;12389!GO:0033484;nitric oxide homeostasis;0.0295784110470665;12389!GO:0004248;stromelysin 1 activity;0.0295784110470665;17392!GO:0042312;regulation of vasodilation;0.0295784110470665;12389!GO:0004924;oncostatin-M receptor activity;0.0295784110470665;18414!GO:0007165;signal transduction;0.0402524877967486;14205,71111,18414,211323,12389,242939,12955,66395,20306,21858,18166!GO:0008201;heparin binding;0.0402524877967486;21826,20306!GO:0005176;ErbB-2 class receptor binding;0.0402524877967486;211323!GO:0045019;negative regulation of nitric oxide biosynthetic process;0.0402524877967486;12389!GO:0043185;vascular endothelial growth factor receptor 3 binding;0.0402524877967486;14205!GO:0045907;positive regulation of vasoconstriction;0.0402524877967486;12389!GO:0048552;regulation of metalloenzyme activity;0.0402524877967486;12389!GO:0048554;positive regulation of metalloenzyme activity;0.0402524877967486;12389!GO:0007243;protein kinase cascade;0.0402524877967486;12389,21858,211323!GO:0007154;cell communication;0.0465489471785;14205,71111,18414,211323,12389,242939,12955,66395,20306,21858,18166!GO:0001937;negative regulation of endothelial cell proliferation;0.0499993359408931;12389!GO:0060056;mammary gland involution;0.0499993359408931;12389!GO:0001602;pancreatic polypeptide receptor activity;0.0499993359408931;18166!GO:0046426;negative regulation of JAK-STAT cascade;0.0499993359408931;12389!GO:0005539;glycosaminoglycan binding;0.0499993359408931;21826,20306!GO:0050793;regulation of developmental process;0.0499993359408931;12389,21858,211323!}}
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region part;0.0203021860065777;13179,14205,18414,242939,21826,74199,20306,16170,21858,17392!GO:0007626;locomotory behavior;0.0203021860065777;20306,16170,18166,211323!GO:0005125;cytokine activity;0.0203021860065777;20306,16170,14205,211323!GO:0043408;regulation of MAPKKK cascade;0.0255942277618279;12389,21858!GO:0005578;proteinaceous extracellular matrix;0.0277167938224125;242939,13179,21858,17392!GO:0005615;extracellular space;0.0277167938224125;13179,14205,18414,21826,74199,20306,16170,21858,17392!GO:0000165;MAPKKK cascade;0.0277167938224125;12389,21858,211323!GO:0007610;behavior;0.0295784110470665;20306,16170,18166,211323!GO:0005102;receptor binding;0.0295784110470665;20306,16170,21858,14205,211323!GO:0045595;regulation of cell differentiation;0.0295784110470665;12389,21858,211323!GO:0007517;muscle development;0.0295784110470665;12389,12955,211323!GO:0033483;gas homeostasis;0.0295784110470665;12389!GO:0052547;regulation of peptidase activity;0.0295784110470665;12389!GO:0030857;negative regulation of epithelial cell differentiation;0.0295784110470665;12389!GO:0045908;negative regulation of vasodilation;0.0295784110470665;12389!GO:0033484;nitric oxide homeostasis;0.0295784110470665;12389!GO:0004248;stromelysin 1 activity;0.0295784110470665;17392!GO:0042312;regulation of vasodilation;0.0295784110470665;12389!GO:0004924;oncostatin-M receptor activity;0.0295784110470665;18414!GO:0007165;signal transduction;0.0402524877967486;14205,71111,18414,211323,12389,242939,12955,66395,20306,21858,18166!GO:0008201;heparin binding;0.0402524877967486;21826,20306!GO:0005176;ErbB-2 class receptor binding;0.0402524877967486;211323!GO:0045019;negative regulation of nitric oxide biosynthetic process;0.0402524877967486;12389!GO:0043185;vascular endothelial growth factor receptor 3 binding;0.0402524877967486;14205!GO:0045907;positive regulation of vasoconstriction;0.0402524877967486;12389!GO:0048552;regulation of metalloenzyme activity;0.0402524877967486;12389!GO:0048554;positive regulation of metalloenzyme activity;0.0402524877967486;12389!GO:0007243;protein kinase cascade;0.0402524877967486;12389,21858,211323!GO:0007154;cell communication;0.0465489471785;14205,71111,18414,211323,12389,242939,12955,66395,20306,21858,18166!GO:0001937;negative regulation of endothelial cell proliferation;0.0499993359408931;12389!GO:0060056;mammary gland involution;0.0499993359408931;12389!GO:0001602;pancreatic polypeptide receptor activity;0.0499993359408931;18166!GO:0046426;negative regulation of JAK-STAT cascade;0.0499993359408931;12389!GO:0005539;glycosaminoglycan binding;0.0499993359408931;21826,20306!GO:0050793;regulation of developmental process;0.0499993359408931;12389,21858,211323!|ontology_enrichment_celltype=CL:0000680!2.28e-10!6;CL:0000183!2.28e-10!6;CL:0000187!2.28e-10!6;CL:0000056!2.28e-10!6;CL:0000222!1.07e-08!7|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0000474!9.78e-08!9;UBERON:0000947!1.89e-07!4;UBERON:0001637!1.89e-07!4;UBERON:0004573!1.89e-07!4;UBERON:0003509!1.89e-07!4;UBERON:0004571!1.89e-07!4;UBERON:0010191!1.89e-07!4;UBERON:0004572!1.89e-07!4;UBERON:0000014!3.22e-07!5;UBERON:0001003!3.22e-07!5;UBERON:0002097!3.22e-07!5;UBERON:0002199!3.22e-07!5;UBERON:0007029!3.22e-07!5;UBERON:0007376!3.22e-07!5;UBERON:0002416!3.22e-07!5;UBERON:0007383!3.22e-07!5;UBERON:0000383!3.81e-07!10|tfbs_overrepresentation_for_novel_motifs=0.0324412,0.00316719,0.089072,2.29932,0.257062,1.17921,0.177565,0.0112494,0.0154056,0.000185489,0.118516,0.632207,0.528683,0.00185366,0.893948,0,0.0754702,1.9409,0.323446,0.0224263,0.617589,0.0114013,0.041015,0.591938,0.260145,0.128164,0.803308,0.0147001,0.23486,0.00549889,0.145819,0.140669,0.00794122,0.179445,0.03257,0.104096,3.97097e-05,0.424764,0.724187,0.296692,2.00095,0.0815331,0.669124,5.636,1.66204e-05,0.282985,0.240562,0.106886,1.13476,0.163363,0.578816,0.159201,0.255494,0.0783105,0.288098,0.53579,0.8479,0.251258,0.0123892,0.20476,0.125923,0.17101,0.464672,0.162991,0.118389,0.660387,0.147697,0.376656,0.0297518,0.270063,0.0676768,1.00454,6.37199e-07,1.10922,2.66107e-06,0.000219651,0.0629898,0.00680648,1.18564,0.821878,2.78843,0.412948,1.69865,2.72714,0.452535,2.52662e-11,0.299554,0.179558,0.432535,0.506671,0.186269,0.0577589,1.39561,1.18171,0.00269908,0.125368,0.174612,0.152779,0.655514,0.0676781,0.364008,0.594993,0.914015,0.58043,0.174474,0.0031003,0.0230708,0.102461,0.00434519,0.0107308,0.0112534,0.539585,0.0555053,0.00597844,0.556862,0.236066,7.50321e-07,0.652977,0.0761622,0.0769115,0.679108,0.288983,0.246301,1.2066,0.22338,1.20078,0.0966174,0.337317,0.146904,0.205353,0.234376,0.0226302,0.412007,1.77331,0.203285,2.34349,1.3412,1.00892,0.518294,0.833302,0.480276,6.14441,0.0197782,0.344054,0.333229,0.0367737,0.664878,0.79667,0.0153909,0.0109022,0.00619441,1.89854e-08,0.0789022,0.366162,0.229564,0.113074,0.295548,0.0206206,0.0660125,0.0762312,0.179903,3.45245,1.63265,1.45415,0.327267,0.216925,0.080998,0.858884,6.70544e-08|tfbs_overrepresentation_jaspar=MA0003.1;9.64327e-17,MA0004.1;0.0254247,MA0006.1;0.00211979,MA0007.1;0.0975926,MA0009.1;1.02382,MA0014.1;2.35999e-09,MA0017.1;0.0499095,MA0019.1;0.280753,MA0024.1;0.302908,MA0025.1;0.129643,MA0027.1;1.31025,MA0028.1;0.00779706,MA0029.1;0.0268465,MA0030.1;0.281518,MA0031.1;0.0215611,MA0038.1;0.605461,MA0040.1;0.388721,MA0041.1;1.00815,MA0042.1;0.548065,MA0043.1;0.250375,MA0046.1;4.01626,MA0048.1;0.135653,MA0050.1;0.0155356,MA0051.1;0.0599561,MA0052.1;1.54543,MA0055.1;0.0141954,MA0056.1;0,MA0057.1;0.953295,MA0058.1;0.0296957,MA0059.1;0.016105,MA0060.1;0.000391441,MA0061.1;0.017054,MA0063.1;0,MA0066.1;0.116531,MA0067.1;0.189645,MA0068.1;0.89243,MA0069.1;0.402357,MA0070.1;0.686697,MA0071.1;0.172938,MA0072.1;0.163743,MA0073.1;7.24895e-07,MA0074.1;0.0333388,MA0076.1;0.00696808,MA0077.1;0.613392,MA0078.1;0.518582,MA0081.1;0.0999699,MA0083.1;0.249569,MA0084.1;0.418593,MA0087.1;1.69079,MA0088.1;0.191849,MA0089.1;0,MA0090.1;0.657686,MA0091.1;0.353412,MA0092.1;2.60802,MA0093.1;0.00955208,MA0095.1;0,MA0098.1;0,MA0100.1;0.00114591,MA0101.1;0.0190031,MA0103.1;0.00572658,MA0105.1;0.00673714,MA0106.1;0.188467,MA0107.1;0.326166,MA0108.2;0.159844,MA0109.1;0,MA0111.1;0.0453055,MA0113.1;0.00363774,MA0114.1;0.000353907,MA0115.1;0.0725533,MA0116.1;0.145018,MA0117.1;0.221259,MA0119.1;0.334143,MA0122.1;0.0681555,MA0124.1;1.49478,MA0125.1;0.386144,MA0130.1;0,MA0131.1;0.0480303,MA0132.1;0,MA0133.1;0,MA0135.1;0.603223,MA0136.1;0.197339,MA0139.1;0.169357,MA0140.1;0.833565,MA0141.1;0.00301594,MA0142.1;0.68005,MA0143.1;1.02857,MA0144.1;1.10137,MA0145.1;3.71892e-06,MA0146.1;1.70753e-08,MA0147.1;0.0118068,MA0148.1;0.234877,MA0149.1;4.18069e-05,MA0062.2;2.15227e-06,MA0035.2;0.624133,MA0039.2;3.12606e-08,MA0138.2;0.0449283,MA0002.2;0.518832,MA0137.2;0.304261,MA0104.2;0.00897519,MA0047.2;0.0167434,MA0112.2;0.00301248,MA0065.2;0.000413019,MA0150.1;0.0974595,MA0151.1;0,MA0152.1;0.848645,MA0153.1;2.78952,MA0154.1;0.0651347,MA0155.1;0.260598,MA0156.1;0.036503,MA0157.1;0.179331,MA0158.1;0,MA0159.1;0.0904406,MA0160.1;0.143341,MA0161.1;0,MA0162.1;2.19794e-12,MA0163.1;8.10288e-07,MA0164.1;0.515007,MA0080.2;0.0961355,MA0018.2;0.0138149,MA0099.2;2.56621,MA0079.2;1.06766e-12,MA0102.2;0.460621,MA0258.1;0.0384822,MA0259.1;0.000423747,MA0442.1;0}}

Latest revision as of 14:41, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:111434260..111434335,-p2@Glipr1
Mm9::chr10:33816181..33816195,-p@chr10:33816181..33816195
-
Mm9::chr10:58275085..58275100,+p@chr10:58275085..58275100
+
Mm9::chr10:67560323..67560365,-p@chr10:67560323..67560365
-
Mm9::chr10:67598037..67598049,-p@chr10:67598037..67598049
-
Mm9::chr10:67821185..67821217,-p@chr10:67821185..67821217
-
Mm9::chr10:85808596..85808612,+p@chr10:85808596..85808612
+
Mm9::chr10:85808640..85808692,+p@chr10:85808640..85808692
+
Mm9::chr10:85808761..85808769,+p@chr10:85808761..85808769
+
Mm9::chr10:85808787..85808829,+p@chr10:85808787..85808829
+
Mm9::chr10:85810413..85810432,+p@chr10:85810413..85810432
+
Mm9::chr10:96942237..96942251,+p1@Dcn
Mm9::chr10:96942259..96942284,+p2@Dcn
Mm9::chr10:96942356..96942384,+p3@Dcn
Mm9::chr10:96942848..96942861,+p@chr10:96942848..96942861
+
Mm9::chr10:96945971..96945981,+p@chr10:96945971..96945981
+
Mm9::chr10:96945998..96946011,+p@chr10:96945998..96946011
+
Mm9::chr10:96946041..96946050,+p@chr10:96946041..96946050
+
Mm9::chr10:96946058..96946077,+p@chr10:96946058..96946077
+
Mm9::chr10:96946087..96946109,+p@chr10:96946087..96946109
+
Mm9::chr10:96946110..96946113,+p@chr10:96946110..96946113
+
Mm9::chr10:96946115..96946149,+p@chr10:96946115..96946149
+
Mm9::chr10:96957645..96957675,+p@chr10:96957645..96957675
+
Mm9::chr10:96966441..96966444,+p@chr10:96966441..96966444
+
Mm9::chr10:96969115..96969146,+p@chr10:96969115..96969146
+
Mm9::chr10:96969168..96969181,+p@chr10:96969168..96969181
+
Mm9::chr10:96969187..96969218,+p@chr10:96969187..96969218
+
Mm9::chr10:96969294..96969304,+p@chr10:96969294..96969304
+
Mm9::chr10:96970339..96970351,+p@chr10:96970339..96970351
+
Mm9::chr10:96970387..96970403,+p@chr10:96970387..96970403
+
Mm9::chr10:96976227..96976253,+p@chr10:96976227..96976253
+
Mm9::chr10:96980085..96980103,+p@chr10:96980085..96980103
+
Mm9::chr10:96980128..96980140,+p@chr10:96980128..96980140
+
Mm9::chr10:96980150..96980162,+p@chr10:96980150..96980162
+
Mm9::chr10:96980181..96980204,+p@chr10:96980181..96980204
+
Mm9::chr10:96980215..96980228,+p@chr10:96980215..96980228
+
Mm9::chr10:96980243..96980263,+p@chr10:96980243..96980263
+
Mm9::chr10:96980274..96980285,+p@chr10:96980274..96980285
+
Mm9::chr10:96980294..96980307,+p@chr10:96980294..96980307
+
Mm9::chr10:96980314..96980325,+p@chr10:96980314..96980325
+
Mm9::chr10:96980641..96980675,+p@chr10:96980641..96980675
+
Mm9::chr11:118162723..118162743,-p@chr11:118162723..118162743
-
Mm9::chr11:118163462..118163473,-p@chr11:118163462..118163473
-
Mm9::chr11:118164365..118164387,-p@chr11:118164365..118164387
-
Mm9::chr11:118164399..118164407,-p@chr11:118164399..118164407
-
Mm9::chr11:118164535..118164544,-p@chr11:118164535..118164544
-
Mm9::chr11:118164866..118164900,-p@chr11:118164866..118164900
-
Mm9::chr11:81849982..81850000,+p@chr11:81849982..81850000
+
Mm9::chr11:81859207..81859223,+p1@Ccl7
Mm9::chr11:96160521..96160536,+p@chr11:96160521..96160536
+
Mm9::chr11:96160537..96160566,+p@chr11:96160537..96160566
+
Mm9::chr14:24251697..24251707,+p@chr14:24251697..24251707
+
Mm9::chr14:24251717..24251731,+p@chr14:24251717..24251731
+
Mm9::chr15:6824260..6824285,-p1@Osmr
Mm9::chr15:6824301..6824306,-p5@Osmr
Mm9::chr15:75145675..75145702,-p@chr15:75145675..75145702
-
Mm9::chr15:77666671..77666698,-p@chr15:77666671..77666698
-
Mm9::chr15:77666718..77666746,-p@chr15:77666718..77666746
-
Mm9::chr15:97612618..97612625,+p@chr15:97612618..97612625
+
Mm9::chr15:97612626..97612637,+p@chr15:97612626..97612637
+
Mm9::chr16:3959456..3959472,-p@chr16:3959456..3959472
-
Mm9::chr17:14802633..14802637,-p@chr17:14802633..14802637
-
Mm9::chr17:14817013..14817022,-p@chr17:14817013..14817022
-
Mm9::chr17:14827154..14827169,-p@chr17:14827154..14827169
-
Mm9::chr17:25590664..25590687,+p@chr17:25590664..25590687
+
Mm9::chr17:71340031..71340044,-p5@Myl12b
Mm9::chr17:78817388..78817406,-p@chr17:78817388..78817406
-
Mm9::chr17:78907550..78907557,+p8@Vit
Mm9::chr17:87574327..87574332,+p@chr17:87574327..87574332
+
Mm9::chr18:37967699..37967773,+p@chr18:37967699..37967773
+
Mm9::chr19:34657626..34657630,+p2@Ifit3
Mm9::chr19:47394869..47394930,-p@chr19:47394869..47394930
-
Mm9::chr19:9072375..9072395,+p@chr19:9072375..9072395
+
Mm9::chr1:127573425..127573432,+p12@Gpr39
Mm9::chr1:127573597..127573652,+p1@Gpr39
Mm9::chr1:127573690..127573699,+p11@Gpr39
Mm9::chr1:127573733..127573745,+p7@Gpr39
Mm9::chr1:127573795..127573810,+p4@Gpr39
Mm9::chr2:112043522..112043530,-p@chr2:112043522..112043530
-
Mm9::chr2:178190136..178190151,+p@chr2:178190136..178190151
+
Mm9::chr3:79689074..79689090,+p11@Fam198b
Mm9::chr4:58219471..58219488,-p2@Svep1
Mm9::chr4:58219511..58219520,-p8@Svep1
Mm9::chr4:58219542..58219545,-p11@Svep1
Mm9::chr4:58219558..58219569,-p6@Svep1
Mm9::chr5:110565033..110565038,+p@chr5:110565033..110565038
+
Mm9::chr5:35868340..35868354,-p3@Cpz
Mm9::chr6:128607994..128608007,+p@chr6:128607994..128608007
+
Mm9::chr6:128920492..128920498,-p@chr6:128920492..128920498
-
Mm9::chr6:17257772..17257778,+p13@Cav1
Mm9::chr7:90894571..90894616,-p5@Il16
Mm9::chr8:33119960..33119991,-p1@Nrg1
Mm9::chr8:69221061..69221108,+p4@Npy1r
Mm9::chr8:69221150..69221161,+p5@Npy1r
Mm9::chr8:69221163..69221172,+p6@Npy1r
Mm9::chr8:69221303..69221327,+p2@Npy1r
Mm9::chr8:69221343..69221360,+p1@Npy1r
Mm9::chr8:69221365..69221382,+p3@Npy1r
Mm9::chr8:69228447..69228492,+p@chr8:69228447..69228492
+
Mm9::chr8:69857155..69857159,+p@chr8:69857155..69857159
+
Mm9::chr9:50559444..50559472,+p10@Cryab
Mm9::chr9:56265830..56265859,-p1@C230081A13Rik
Mm9::chr9:7445837..7445855,+p1@Mmp3
Mm9::chrX:160811295..160811307,+p8@Figf
Mm9::chrX:160811318..160811344,+p1@Figf
Mm9::chrX:160811352..160811356,-p@chrX:160811352..160811356
-
Mm9::chrX:160811359..160811365,+p9@Figf
Mm9::chrX:160811403..160811416,+p10@Figf
Mm9::chrX:160811420..160811437,+p7@Figf
Mm9::chrX:160811447..160811481,+p3@Figf
Mm9::chrX:160811531..160811557,+p6@Figf
Mm9::chrX:160811662..160811712,+p2@Figf
Mm9::chrX:160823617..160823622,+p@chrX:160823617..160823622
+
Mm9::chrX:160823859..160823870,+p@chrX:160823859..160823870
+
Mm9::chrX:160829602..160829624,+p13@Figf
Mm9::chrX:160829660..160829667,+p14@Figf
Mm9::chrX:160832435..160832462,+p@chrX:160832435..160832462
+
Mm9::chrX:160838683..160838694,+p@chrX:160838683..160838694
+
Mm9::chrX:160838787..160838800,+p@chrX:160838787..160838800
+
Mm9::chrX:160838859..160838880,+p@chrX:160838859..160838880
+
Mm9::chrX:160839012..160839023,+p@chrX:160839012..160839023
+
Mm9::chrX:160839069..160839076,+p@chrX:160839069..160839076
+
Mm9::chrX:160839194..160839217,+p@chrX:160839194..160839217
+
Mm9::chrX:160839338..160839364,+p@chrX:160839338..160839364
+
Mm9::chrX:160839663..160839673,+p@chrX:160839663..160839673
+
Mm9::chrX:160839744..160839754,+p@chrX:160839744..160839754
+
Mm9::chrX:160839768..160839780,+p@chrX:160839768..160839780
+
Mm9::chrX:160840025..160840037,+p@chrX:160840025..160840037
+
Mm9::chrX:160840048..160840057,+p@chrX:160840048..160840057
+
Mm9::chrX:160840154..160840181,+p@chrX:160840154..160840181
+
Mm9::chrX:65748571..65748595,+p@chrX:65748571..65748595
+
Mm9::chrX:65748600..65748616,+p@chrX:65748600..65748616
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0044421extracellular region part0.0203021860065777
GO:0007626locomotory behavior0.0203021860065777
GO:0005125cytokine activity0.0203021860065777
GO:0043408regulation of MAPKKK cascade0.0255942277618279
GO:0005578proteinaceous extracellular matrix0.0277167938224125
GO:0005615extracellular space0.0277167938224125
GO:0000165MAPKKK cascade0.0277167938224125
GO:0007610behavior0.0295784110470665
GO:0005102receptor binding0.0295784110470665
GO:0045595regulation of cell differentiation0.0295784110470665
GO:0007517muscle development0.0295784110470665
GO:0033483gas homeostasis0.0295784110470665
GO:0052547regulation of peptidase activity0.0295784110470665
GO:0030857negative regulation of epithelial cell differentiation0.0295784110470665
GO:0045908negative regulation of vasodilation0.0295784110470665
GO:0033484nitric oxide homeostasis0.0295784110470665
GO:0004248stromelysin 1 activity0.0295784110470665
GO:0042312regulation of vasodilation0.0295784110470665
GO:0004924oncostatin-M receptor activity0.0295784110470665
GO:0007165signal transduction0.0402524877967486
GO:0008201heparin binding0.0402524877967486
GO:0005176ErbB-2 class receptor binding0.0402524877967486
GO:0045019negative regulation of nitric oxide biosynthetic process0.0402524877967486
GO:0043185vascular endothelial growth factor receptor 3 binding0.0402524877967486
GO:0045907positive regulation of vasoconstriction0.0402524877967486
GO:0048552regulation of metalloenzyme activity0.0402524877967486
GO:0048554positive regulation of metalloenzyme activity0.0402524877967486
GO:0007243protein kinase cascade0.0402524877967486
GO:0007154cell communication0.0465489471785
GO:0001937negative regulation of endothelial cell proliferation0.0499993359408931
GO:0060056mammary gland involution0.0499993359408931
GO:0001602pancreatic polypeptide receptor activity0.0499993359408931
GO:0046426negative regulation of JAK-STAT cascade0.0499993359408931
GO:0005539glycosaminoglycan binding0.0499993359408931
GO:0050793regulation of developmental process0.0499993359408931



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
muscle precursor cell2.28e-106
contractile cell2.28e-106
muscle cell2.28e-106
myoblast2.28e-106
mesodermal cell1.07e-087

Uber Anatomy
Ontology termp-valuen
female reproductive system9.78e-089
aorta1.89e-074
artery1.89e-074
systemic artery1.89e-074
arterial blood vessel1.89e-074
systemic arterial system1.89e-074
aortic system1.89e-074
arterial system1.89e-074
zone of skin3.22e-075
skin epidermis3.22e-075
skin of body3.22e-075
integument3.22e-075
surface3.22e-075
outer epithelium3.22e-075
integumental system3.22e-075
enveloping layer of ectoderm3.22e-075
musculature of body3.81e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.19.64327e-17
MA0004.10.0254247
MA0006.10.00211979
MA0007.10.0975926
MA0009.11.02382
MA0014.12.35999e-09
MA0017.10.0499095
MA0019.10.280753
MA0024.10.302908
MA0025.10.129643
MA0027.11.31025
MA0028.10.00779706
MA0029.10.0268465
MA0030.10.281518
MA0031.10.0215611
MA0038.10.605461
MA0040.10.388721
MA0041.11.00815
MA0042.10.548065
MA0043.10.250375
MA0046.14.01626
MA0048.10.135653
MA0050.10.0155356
MA0051.10.0599561
MA0052.11.54543
MA0055.10.0141954
MA0056.10
MA0057.10.953295
MA0058.10.0296957
MA0059.10.016105
MA0060.10.000391441
MA0061.10.017054
MA0063.10
MA0066.10.116531
MA0067.10.189645
MA0068.10.89243
MA0069.10.402357
MA0070.10.686697
MA0071.10.172938
MA0072.10.163743
MA0073.17.24895e-07
MA0074.10.0333388
MA0076.10.00696808
MA0077.10.613392
MA0078.10.518582
MA0081.10.0999699
MA0083.10.249569
MA0084.10.418593
MA0087.11.69079
MA0088.10.191849
MA0089.10
MA0090.10.657686
MA0091.10.353412
MA0092.12.60802
MA0093.10.00955208
MA0095.10
MA0098.10
MA0100.10.00114591
MA0101.10.0190031
MA0103.10.00572658
MA0105.10.00673714
MA0106.10.188467
MA0107.10.326166
MA0108.20.159844
MA0109.10
MA0111.10.0453055
MA0113.10.00363774
MA0114.10.000353907
MA0115.10.0725533
MA0116.10.145018
MA0117.10.221259
MA0119.10.334143
MA0122.10.0681555
MA0124.11.49478
MA0125.10.386144
MA0130.10
MA0131.10.0480303
MA0132.10
MA0133.10
MA0135.10.603223
MA0136.10.197339
MA0139.10.169357
MA0140.10.833565
MA0141.10.00301594
MA0142.10.68005
MA0143.11.02857
MA0144.11.10137
MA0145.13.71892e-06
MA0146.11.70753e-08
MA0147.10.0118068
MA0148.10.234877
MA0149.14.18069e-05
MA0062.22.15227e-06
MA0035.20.624133
MA0039.23.12606e-08
MA0138.20.0449283
MA0002.20.518832
MA0137.20.304261
MA0104.20.00897519
MA0047.20.0167434
MA0112.20.00301248
MA0065.20.000413019
MA0150.10.0974595
MA0151.10
MA0152.10.848645
MA0153.12.78952
MA0154.10.0651347
MA0155.10.260598
MA0156.10.036503
MA0157.10.179331
MA0158.10
MA0159.10.0904406
MA0160.10.143341
MA0161.10
MA0162.12.19794e-12
MA0163.18.10288e-07
MA0164.10.515007
MA0080.20.0961355
MA0018.20.0138149
MA0099.22.56621
MA0079.21.06766e-12
MA0102.20.460621
MA0258.10.0384822
MA0259.10.000423747
MA0442.10
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