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MCL coexpression mm9:306: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0.130004032382152,0.162862766291676,0.0573828993656285,0.176350522035494,0.792530761535811,0.825761253685655,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354470656487682,0,0,0.529532364046789,0.587252267312668,0.332128066466673,0.466945408820426,0.483597486870526,0.766771512944017,0.667707915506034,0.725368057030116,0,0,0,0.19802531727213,0.242063823631254,0.148707117369847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212317718423508,0,0,0,0,0,0,0,0,0,0,0.385003021962907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08577226985806,0,0,0.549662689534538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664906344706957,0.474281498792633,0,0,0.0526429550379996,0.231191481153208,0.190882538044845,0.367650206374191,0.511437178572546,0.448220845971214,0.459735536061174,0.444592303774087,0.469769142366514,0.530337599963341,0.760048127457751,0.783709734751791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0663147875126409,0,0,0,0,0,0,0.0998284739419172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0330027737817202,0.502805428446203,0,0,0,0,0,0,0,0,0,0,1.4709769851906,0,0.0803809427109337,0.312740381936829,0.504296358679007,0.641797248868273,0.761055649814624,0.835308937760096,1.09097185080666,0.964818985776825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887491219977394,0,0,0,0.0767094571656325,0,0.0303253478659813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0871588832444397,0,0.0604381279967265,0.0114748527955202,0.098117166361508,0.0750453505157095,0.0388749848471105,0.0523284672130554,0.0472245945615809,0,0.0476191773904887,0,0,0.0596387295197733,0,0.0354759961767123,0.0554254320122454,0.0294684307081759,0.0748964051866952,0.0678996586311492,0.0729583017401753,0,0.0553034373508932,0,0.0486884105045233,0.0220014155804685,0,0,0.0766064454112358,0,0,0.0845301845292944,0,0,0
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002563!8.43e-11!9;CL:0002251!8.43e-11!9;CL:0000239!7.55e-08!6;CL:0000677!7.55e-08!6;CL:0000212!7.55e-08!6;CL:0000584!7.55e-08!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005409!1.37e-36!47;UBERON:0000160!1.66e-32!31;UBERON:0000344!1.33e-18!15;UBERON:0001242!4.52e-16!13;UBERON:0000060!4.52e-16!13;UBERON:0001262!4.52e-16!13;UBERON:0004786!4.52e-16!13;UBERON:0001007!4.87e-11!116;UBERON:0001555!4.87e-11!116;UBERON:0007026!4.87e-11!116;UBERON:0003350!8.43e-11!9;UBERON:0004808!8.43e-11!9;UBERON:0001277!8.43e-11!9;UBERON:0004119!1.19e-10!118;UBERON:0000925!1.19e-10!118;UBERON:0006595!1.19e-10!118;UBERON:0004923!6.08e-10!24;UBERON:0004921!1.07e-09!114;UBERON:0000485!1.88e-08!11
}}

Latest revision as of 15:04, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:126437788..126437803,+p1@Avil
Mm9::chr11:115773629..115773649,+p1@1110017F19Rik
Mm9::chr13:99465639..99465647,-p@chr13:99465639..99465647
-
Mm9::chr16:13729887..13729896,+p2@1810007I06Rik
Mm9::chr16:13729897..13729941,+p1@1810007I06Rik
Mm9::chr16:13730540..13730549,-p3@Pla2g10
Mm9::chr16:13730550..13730563,-p1@Pla2g10
Mm9::chr19:10509680..10509696,+p@chr19:10509680..10509696
+
Mm9::chr1:169303652..169303656,-p@chr1:169303652..169303656
-
Mm9::chr2:170253337..170253352,-p2@Bcas1
Mm9::chr2:170253353..170253362,-p5@Bcas1
Mm9::chr6:146981050..146981069,+p1@Rep15
Mm9::chr6:146981108..146981119,+p3@Rep15
Mm9::chr7:129329665..129329727,-p1@Ern2
Mm9::chr7:129329738..129329745,-p2@Ern2
Mm9::chr8:127099975..127099990,+p2@Capn9
Mm9::chr8:127100005..127100026,+p1@Capn9
Mm9::chr8:73242433..73242448,+p1@Gm3336
Mm9::chr9:44521279..44521301,-p6@Phldb1
Mm9::chr9:69868058..69868070,+p@chr9:69868058..69868070
+
Mm9::chr9:69880251..69880255,-p@chr9:69880251..69880255
-
Mm9::chr9:69880441..69880444,-p@chr9:69880441..69880444
-
Mm9::chr9:69884488..69884511,-p@chr9:69884488..69884511
-
Mm9::chr9:69884512..69884518,-p@chr9:69884512..69884518
-
Mm9::chr9:69915753..69915762,+p@chr9:69915753..69915762
+
Mm9::chr9:72913702..72913717,+p@chr9:72913702..72913717
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00124634
MA0004.10.358028
MA0006.10.0376667
MA0007.10.103069
MA0009.11.0889
MA0014.10.0519867
MA0017.10.176804
MA0019.10.764645
MA0024.10.388875
MA0025.10.630472
MA0027.12.00714
MA0028.10.159417
MA0029.10.371051
MA0030.10.376415
MA0031.10.347586
MA0038.10.578883
MA0040.10.435948
MA0041.10.0735541
MA0042.10.0677776
MA0043.10.5085
MA0046.10.45588
MA0048.10.0168999
MA0050.10.414313
MA0051.10.205659
MA0052.10.442788
MA0055.13.774
MA0056.10
MA0057.10.210304
MA0058.10.231244
MA0059.10.527296
MA0060.10.0168335
MA0061.10.1011
MA0063.10
MA0066.10.192176
MA0067.10.732677
MA0068.11.07095
MA0069.10.443076
MA0070.10.434849
MA0071.10.132283
MA0072.10.427684
MA0073.113.4136
MA0074.10.16874
MA0076.10.0537082
MA0077.10.409496
MA0078.10.64778
MA0081.10.275922
MA0083.10.507806
MA0084.11.04444
MA0087.10.470385
MA0088.10.205212
MA0089.10
MA0090.10.310535
MA0091.10.118208
MA0092.10.310962
MA0093.10.381754
MA0095.10
MA0098.10
MA0100.10.486222
MA0101.10.0741335
MA0103.12.11898
MA0105.10.202372
MA0106.10.234207
MA0107.10.181933
MA0108.20.296634
MA0109.10
MA0111.11.12049
MA0113.11.15436
MA0114.10.244479
MA0115.10.51095
MA0116.10.14839
MA0117.11.21278
MA0119.10.549042
MA0122.10.500096
MA0124.10.683426
MA0125.10.615761
MA0130.10
MA0131.10.27582
MA0132.10
MA0133.10
MA0135.10.540552
MA0136.10.535598
MA0139.10.513965
MA0140.10.486044
MA0141.10.211574
MA0142.10.892551
MA0143.10.22579
MA0144.11.10989
MA0145.10.131485
MA0146.10.306994
MA0147.10.272153
MA0148.12.46237
MA0149.10.0766295
MA0062.20.00633014
MA0035.20.493344
MA0039.20.738433
MA0138.21.36383
MA0002.21.12217
MA0137.20.457011
MA0104.20.175212
MA0047.21.72069
MA0112.21.60978
MA0065.20.23538
MA0150.10.10301
MA0151.10
MA0152.10.199123
MA0153.10.55531
MA0154.10.236552
MA0155.10.646088
MA0156.10.436777
MA0157.10.310784
MA0158.10
MA0159.10.852724
MA0160.10.121603
MA0161.10
MA0162.10.0318231
MA0163.10.623765
MA0164.10.181834
MA0080.20.722232
MA0018.20.188226
MA0099.20.26517
MA0079.20.759451
MA0102.21.09525
MA0258.11.83953
MA0259.10.252756
MA0442.10
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