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MCL coexpression mm9:610: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0043486;histone exchange;0.00657426176518928;50927!GO:0043044;ATP-dependent chromatin remodeling;0.00657426176518928;50927!GO:0051879;Hsp90 protein binding;0.0131470827805005;50927!GO:0042393;histone binding;0.026286962732604;50927!
}}

Latest revision as of 15:35, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr12:109425381..109425395,+p@chr12:109425381..109425395
+
Mm9::chr12:117494505..117494519,-p@chr12:117494505..117494519
-
Mm9::chr15:82188720..82188724,+p@chr15:82188720..82188724
+
Mm9::chr17:79754200..79754204,-p6@Cdc42ep3
Mm9::chr4:116283947..116283976,-p@chr4:116283947..116283976
-
Mm9::chr4:116291519..116291550,-p@chr4:116291519..116291550
-
Mm9::chr4:116299972..116300002,-p3@Nasp
Mm9::chr4:94291417..94291435,+p@chr4:94291417..94291435
+
Mm9::chr4:94293941..94293951,+p@chr4:94293941..94293951
+
Mm9::chr6:49165012..49165021,-p4@Igf2bp3
Mm9::chr8:126571045..126571062,+p@chr8:126571045..126571062
+
Mm9::chr9:108462188..108462193,+p@chr9:108462188..108462193
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0043486histone exchange0.00657426176518928
GO:0043044ATP-dependent chromatin remodeling0.00657426176518928
GO:0051879Hsp90 protein binding0.0131470827805005
GO:0042393histone binding0.026286962732604



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primordium5.72e-07134
embryo6.72e-07320


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0244195
MA0004.10.819913
MA0006.10.16569
MA0007.10.290695
MA0009.10.709264
MA0014.10.0136923
MA0017.11.04297
MA0019.10.535691
MA0024.10.667197
MA0025.10.936082
MA0027.12.34178
MA0028.10.173587
MA0029.11.55834
MA0030.11.57146
MA0031.11.5004
MA0038.10.432665
MA0040.10.721328
MA0041.10.239557
MA0042.10.228771
MA0043.10.802848
MA0046.10.743934
MA0048.10.382561
MA0050.10.337476
MA0051.10.440863
MA0052.10.729105
MA0055.10.624457
MA0056.10
MA0057.10.350222
MA0058.10.635024
MA0059.10.658541
MA0060.10.108526
MA0061.10.129002
MA0063.10
MA0066.10.422624
MA0067.11.04514
MA0068.10.0405002
MA0069.10.729433
MA0070.10.720077
MA0071.10.336739
MA0072.10.711905
MA0073.18.11254e-06
MA0074.10.390075
MA0076.10.200996
MA0077.10.691048
MA0078.10.471303
MA0081.10.252371
MA0083.10.802078
MA0084.11.3693
MA0087.10.760279
MA0088.10.0227266
MA0089.10
MA0090.10.27428
MA0091.11.52754
MA0092.10.274547
MA0093.10.531567
MA0095.10
MA0098.10
MA0100.10.379666
MA0101.10.240622
MA0103.10.19444
MA0105.10.0633795
MA0106.10.478503
MA0107.10.189625
MA0108.20.557195
MA0109.10
MA0111.10.286331
MA0113.10.452439
MA0114.10.127366
MA0115.10.805567
MA0116.10.165534
MA0117.10.774259
MA0119.10.241106
MA0122.10.793507
MA0124.12.27144
MA0125.10.920215
MA0130.10
MA0131.10.531427
MA0132.10
MA0133.10
MA0135.10.838263
MA0136.10.408073
MA0139.10.297344
MA0140.10.379562
MA0141.11.13771
MA0142.10.604892
MA0143.10.467531
MA0144.10.406018
MA0145.10.264944
MA0146.10.142424
MA0147.10.428193
MA0148.10.317692
MA0149.10.245177
MA0062.20.235333
MA0035.20.383789
MA0039.20.0997675
MA0138.20.523978
MA0002.20.302282
MA0137.20.207733
MA0104.20.326825
MA0047.20.431964
MA0112.20.025769
MA0065.20.0259098
MA0150.10.290598
MA0151.10
MA0152.10.432062
MA0153.10.854464
MA0154.10.376318
MA0155.10.0312913
MA0156.10.200311
MA0157.11.40745
MA0158.10
MA0159.10.145521
MA0160.10.320315
MA0161.10
MA0162.10.00450899
MA0163.10.0220786
MA0164.11.052
MA0080.20.190316
MA0018.20.417217
MA0099.20.518072
MA0079.20.000126373
MA0102.21.42135
MA0258.10.118033
MA0259.10.130633
MA0442.10
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