User:Serkan/test0: Difference between revisions
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|titles=show | |titles=show | ||
|hidegaps=none | |hidegaps=none | ||
|sep= | |sep=: | ||
|propsep=<PROP> | |propsep=<PROP> | ||
|manysep=<MANY> | |manysep=<MANY> | ||
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{{#arraydefine:tfdetailsarray|{{#ask:[[Category:EntrezGene]][[tax_id::9606]][[tf?::true]][[:+]] |sep = | {{#arraydefine:tfdetailsarray|{{#ask:[[Category:EntrezGene]][[tax_id::9606]][[tf?::true]][[:+]] |sep =:| format=array |name=tfdetailsarray}}}} | ||
Size of array tfdetailsarray: {{#arraysize:tfdetailsarray}} | Size of array tfdetailsarray: {{#arraysize:tfdetailsarray}} | ||
{{#arrayprint: tfdetailsarray}} | {{#arrayprint: tfdetailsarray}} | ||
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{{#vardefine:tf_temp|{{#arraymap:{{#var:tf_details}}| | {{#vardefine:tf_temp|{{#arraymap:{{#var:tf_details}}|:|x| {{#explode:x|<PROP>|2}}|$}}}} | ||
TF Temp: {{#var:tf_temp}} | TF Temp: {{#var:tf_temp}} | ||
Revision as of 13:54, 18 September 2013
GRAPH
| Name: | {{{name}}} | ||
|---|---|---|---|
| Namespace: | {{{namespace}}} | ||
| Definition: | {{{def}}} | ||
| Xrefs: |
| ||
| Synonyms: | {{{synonym}}} | ||
| Comments: | {{{comment}}} | ||
| Alt_id: | {{{alt_id}}} | ||
| Subset: | {{{subset}}} | ||
| Created by: | {{{created_by}}} | ||
| Creation date: | {{{obo_creation_date}}} | ||
| Has quality: | {{{has_quality}}} |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
NA
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
"{{{obo_creation_date}}}" contains an extrinsic dash or other characters that are invalid for a date interpretation.
Property "Property value" (as page type) with input value "{{{property_value}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
| Name | Novel motifs human sample pval | |
|---|---|---|
| 1 | motif1_TCGNAG | |
| 10 | motif10_SCGGAGASN | |
| 100 | motif100_GCYTNCTC | |
| 101 | motif101_NAGCAASA | |
| 102 | motif102_GCAAMGT | |
| 103 | motif103_CGGCTAWWT | |
| 104 | motif104_GTWSGMT | |
| 105 | motif105_KTNGNAGWMG | |
| 106 | motif106_KCGCANTC | |
| 107 | motif107_CGTCTGCGTA | |
| ... further results | ||
Size of array tfdetailsarray: 0
TF Temp: {{#e[[plode:[[|<PROP>|2}}${{#eSpecialplode:Special|<PROP>|2}}${{#eAsk/-5B-5BCategoryplode:Ask/-5B-5BCategory|<PROP>|2}}${{#eEntrezGene-5D-5D-20-5B-5BTax-20idplode:EntrezGene-5D-5D-20-5B-5BTax-20id|<PROP>|2}}${{#e9606-5D-5D-20-5B-5BTf-3Fplode:9606-5D-5D-20-5B-5BTf-3F|<PROP>|2}}${{#etrue-5D-5D/-3FGeneID/-3FSymbol/-3FDescription/mainlabel=-2D/offset=0/format=array/link=none/sort=/order=/headers=hide/titles=show/hidegaps=none/sep=plode:true-5D-5D/-3FGeneID/-3FSymbol/-3FDescription/mainlabel=-2D/offset=0/format=array/link=none/sort=/order=/headers=hide/titles=show/hidegaps=none/sep=|<PROP>|2}}${{#e/propsep=-3CPROP-3E/manysep=-3CMANY-3E/recordsep=-3CRCRD-3E/headersep=|... further results]]plode:/propsep=-3CPROP-3E/manysep=-3CMANY-3E/recordsep=-3CRCRD-3E/headersep=|... further results]]|<PROP>|2}}
Size of array number of peaks: 0
