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|class=sortable wikitable smwtable
|class=sortable wikitable smwtable
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{{#vardefine:tf_peaknumbers|{{#ask:[[Category:FFCP]][[EntrezGene::165]]
|?#
|?Short description
|format=array
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|propsep=<PROP>
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|recordsep=<RCRD>
|headersep=
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}}
{{#vardefine:tf_details|{{#ask:[[Category:EntrezGene]][[tax_id::9606]][[tf?::true]]
|?GeneID
|?symbol
|?Description
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{{#vardefine:tf_temp|{{#arraymap:{{#var:tf_details}}|:|x| {{#explode:x|/|2}}|$}}}}
TF Temp: {{#var:tf_temp}}
{{#arraydefine:numberofpeaks|{{#arraymap:{{#var:tf_details}}|,|x| 
{{#arraydefine:e|
{{#ask:[[Category:FFCP]][[EntrezGene::{{{{#explode:x|/|2}}}}]]
|?Id
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}}|,}}
}}|,}}
Size of array number of peaks: {{#arraysize:numberofpeaks}}

Revision as of 14:00, 18 September 2013

GRAPH

Name:{{{name}}}
Namespace:{{{namespace}}}
Definition:{{{def}}}
Xrefs:
links:
{{{xref}}}:[1]
Synonyms: {{{synonym}}}
Comments:{{{comment}}}
Alt_id: {{{alt_id}}}
Subset: {{{subset}}}
Created by:{{{created_by}}}
Creation date:{{{obo_creation_date}}}
Has quality:{{{has_quality}}}

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents NA

Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results







"{{{obo_creation_date}}}" contains an extrinsic dash or other characters that are invalid for a date interpretation.




Property "Property value" (as page type) with input value "{{{property_value}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




 NameNovel motifs human sample pval
1motif1_TCGNAG
10motif10_SCGGAGASN
100motif100_GCYTNCTC
101motif101_NAGCAASA
102motif102_GCAAMGT
103motif103_CGGCTAWWT
104motif104_GTWSGMT
105motif105_KTNGNAGWMG
106motif106_KCGCANTC
107motif107_CGTCTGCGTA
... further results