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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007862
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0002573,CL:0000125,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0002573,CL:0000125,CL:0000255
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000210;;FF:0103046
|is_a=EFO:0002091;;FF:0000210;;FF:0103046
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11854
|name=neurofibroma cell line:Hs 53.T
|name=neurofibroma cell line:Hs 53.T
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=HMGA1,2:1.68413699071;HES1:1.62530119785;SRF:1.60725185296;FOXL1:1.52938825048;GLI1..3:1.51403729324;MYBL2:1.46397376622;EVI1:1.46176124247;TAL1_TCF{3,4,12}:1.37121486141;GCM1,2:1.32347676823;ALX4:1.31539069128;XBP1:1.31288351806;TEAD1:1.30970937179;HIF1A:1.29960337201;NKX3-1:1.24193619087;NR3C1:1.22150596783;HAND1,2:1.15937315497;NKX2-2,8:1.1583529186;UFEwm:1.1283337637;HOX{A5,B5}:1.0841615408;TFAP4:1.06865765863;ADNP_IRX_SIX_ZHX:1.05145809834;ZNF384:0.978348783252;NFATC1..3:0.969999326389;IKZF1:0.965246258982;HBP1_HMGB_SSRP1_UBTF:0.960254133127;TFAP2{A,C}:0.957745020603;MAFB:0.93127843027;TFAP2B:0.880123541249;KLF4:0.87898660429;XCPE1{core}:0.824861202006;ZNF423:0.814189888375;PITX1..3:0.788696763395;GTF2A1,2:0.786031576863;ZIC1..3:0.785893864778;TOPORS:0.781623435929;MTE{core}:0.776838704692;TEF:0.768619263187;LHX3,4:0.756501801403;HMX1:0.755896813533;SOX17:0.755681414996;NFE2L1:0.755483264564;MAZ:0.747930874044;GFI1B:0.733022853629;POU5F1:0.73160033243;TLX1..3_NFIC{dimer}:0.711507384578;AIRE:0.673100834055;TP53:0.669461319584;PAX4:0.667947971093;HIC1:0.642148337972;TBX4,5:0.588597943192;ZNF148:0.583641787166;NKX2-1,4:0.579269846429;EN1,2:0.57448434064;EBF1:0.554826935366;PRDM1:0.547488158209;TFCP2:0.538903134204;GTF2I:0.531830175019;GATA4:0.52567700171;FOXP1:0.524959483323;AHR_ARNT_ARNT2:0.511200204528;PATZ1:0.501420013902;RXR{A,B,G}:0.498703445841;ESR1:0.484976740541;HSF1,2:0.481138965476;PAX1,9:0.47521015133;POU3F1..4:0.45276621599;VSX1,2:0.444550728675;EGR1..3:0.426515071195;RXRA_VDR{dimer}:0.418932724533;POU1F1:0.414667647809;PAX3,7:0.376145976016;MZF1:0.374585316123;GZF1:0.348759814983;PAX8:0.319227011738;LEF1_TCF7_TCF7L1,2:0.315640837949;MEF2{A,B,C,D}:0.308642109287;HLF:0.268910294515;DBP:0.245157705465;ATF6:0.237117299006;MED-1{core}:0.218433474118;CDC5L:0.216125393861;STAT2,4,6:0.214800020702;STAT5{A,B}:0.212482678298;TFDP1:0.209597151338;NANOG{mouse}:0.183916559949;ZBTB6:0.174146695315;ZNF238:0.163355151028;MTF1:0.156376519458;NFE2L2:0.0988191871385;TBP:0.0897286405154;FOXA2:0.0891956172087;HOX{A4,D4}:0.0855404066907;NKX3-2:0.0849046991832;PPARG:0.0229614305241;SMAD1..7,9:0.0158887997427;PAX6:0.00824440045023;GFI1:-0.00841357111593;MYFfamily:-0.022782972603;POU6F1:-0.0235563406185;ZFP161:-0.0274375360636;ZBTB16:-0.0481727924388;NFIX:-0.0504796768107;BACH2:-0.0528634617877;CRX:-0.0534587199843;AR:-0.0655449549645;SPZ1:-0.0846949293519;FOSL2:-0.0864102822998;SP1:-0.0879385919399;HNF1A:-0.0978753047864;ONECUT1,2:-0.105448895241;PAX5:-0.106471919901;FOS_FOS{B,L1}_JUN{B,D}:-0.121205347238;MYB:-0.125266671582;RREB1:-0.134701589393;PRRX1,2:-0.153095731184;BREu{core}:-0.166358071657;SOX2:-0.168196481136;FOXD3:-0.169305958538;REST:-0.18343393799;ZNF143:-0.186618617239;RUNX1..3:-0.192820382585;IRF1,2:-0.198036681281;SOX5:-0.209129169911;ARID5B:-0.211663681136;CEBPA,B_DDIT3:-0.214793265662;FOX{F1,F2,J1}:-0.260711567448;NFE2:-0.279043584838;PAX2:-0.283606188305;NHLH1,2:-0.311650800021;NR6A1:-0.315318198121;FOXQ1:-0.330142734705;bHLH_family:-0.332536918665;NFKB1_REL_RELA:-0.347159589347;IKZF2:-0.359507451242;RFX1:-0.373790853379;DMAP1_NCOR{1,2}_SMARC:-0.374857856632;FOXM1:-0.403665290035;ATF2:-0.405740292308;E2F1..5:-0.40991997488;CUX2:-0.412412449887;T:-0.441037085169;CDX1,2,4:-0.442706277405;FOXO1,3,4:-0.444573649574;JUN:-0.446072842782;ETS1,2:-0.485539572143;ATF5_CREB3:-0.492115481956;HOXA9_MEIS1:-0.493247089845;GATA6:-0.494476412757;ATF4:-0.500499662652;POU2F1..3:-0.502870213009;SPI1:-0.526098762113;NRF1:-0.531514516819;RORA:-0.53642081658;TGIF1:-0.537559489451;CREB1:-0.539532170831;SOX{8,9,10}:-0.549780527179;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.55224762526;TLX2:-0.55560526905;HOX{A6,A7,B6,B7}:-0.558222573982;HNF4A_NR2F1,2:-0.562620592395;NKX2-3_NKX2-5:-0.567012645424;OCT4_SOX2{dimer}:-0.602134524188;FOX{D1,D2}:-0.603592732321;LMO2:-0.603857599706;ELK1,4_GABP{A,B1}:-0.625271172583;SNAI1..3:-0.665244054513;PDX1:-0.667234210605;ALX1:-0.682408702318;EP300:-0.724308801279;IRF7:-0.724493073864;SPIB:-0.744352805412;NR5A1,2:-0.7462622601;NANOG:-0.755205860264;ELF1,2,4:-0.764177071943;YY1:-0.77980291001;NFIL3:-0.779814287483;ESRRA:-0.783323768735;NKX6-1,2:-0.800172964497;BPTF:-0.80157439893;FOXN1:-0.819532836762;ZEB1:-0.854503438349;RBPJ:-0.855753528264;FOX{I1,J2}:-0.878056719166;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.893884852864;FOXP3:-1.03435312426;NFY{A,B,C}:-1.07234055004;SREBF1,2:-1.17923185864;MYOD1:-1.24150932101;NR1H4:-1.25249372437;STAT1,3:-1.28440363087;RFX2..5_RFXANK_RFXAP:-1.42497681702;PBX1:-1.42693790254
|top_motifs=HMGA1,2:1.68413699071;HES1:1.62530119785;SRF:1.60725185296;FOXL1:1.52938825048;GLI1..3:1.51403729324;MYBL2:1.46397376622;EVI1:1.46176124247;TAL1_TCF{3,4,12}:1.37121486141;GCM1,2:1.32347676823;ALX4:1.31539069128;XBP1:1.31288351806;TEAD1:1.30970937179;HIF1A:1.29960337201;NKX3-1:1.24193619087;NR3C1:1.22150596783;HAND1,2:1.15937315497;NKX2-2,8:1.1583529186;UFEwm:1.1283337637;HOX{A5,B5}:1.0841615408;TFAP4:1.06865765863;ADNP_IRX_SIX_ZHX:1.05145809834;ZNF384:0.978348783252;NFATC1..3:0.969999326389;IKZF1:0.965246258982;HBP1_HMGB_SSRP1_UBTF:0.960254133127;TFAP2{A,C}:0.957745020603;MAFB:0.93127843027;TFAP2B:0.880123541249;KLF4:0.87898660429;XCPE1{core}:0.824861202006;ZNF423:0.814189888375;PITX1..3:0.788696763395;GTF2A1,2:0.786031576863;ZIC1..3:0.785893864778;TOPORS:0.781623435929;MTE{core}:0.776838704692;TEF:0.768619263187;LHX3,4:0.756501801403;HMX1:0.755896813533;SOX17:0.755681414996;NFE2L1:0.755483264564;MAZ:0.747930874044;GFI1B:0.733022853629;POU5F1:0.73160033243;TLX1..3_NFIC{dimer}:0.711507384578;AIRE:0.673100834055;TP53:0.669461319584;PAX4:0.667947971093;HIC1:0.642148337972;TBX4,5:0.588597943192;ZNF148:0.583641787166;NKX2-1,4:0.579269846429;EN1,2:0.57448434064;EBF1:0.554826935366;PRDM1:0.547488158209;TFCP2:0.538903134204;GTF2I:0.531830175019;GATA4:0.52567700171;FOXP1:0.524959483323;AHR_ARNT_ARNT2:0.511200204528;PATZ1:0.501420013902;RXR{A,B,G}:0.498703445841;ESR1:0.484976740541;HSF1,2:0.481138965476;PAX1,9:0.47521015133;POU3F1..4:0.45276621599;VSX1,2:0.444550728675;EGR1..3:0.426515071195;RXRA_VDR{dimer}:0.418932724533;POU1F1:0.414667647809;PAX3,7:0.376145976016;MZF1:0.374585316123;GZF1:0.348759814983;PAX8:0.319227011738;LEF1_TCF7_TCF7L1,2:0.315640837949;MEF2{A,B,C,D}:0.308642109287;HLF:0.268910294515;DBP:0.245157705465;ATF6:0.237117299006;MED-1{core}:0.218433474118;CDC5L:0.216125393861;STAT2,4,6:0.214800020702;STAT5{A,B}:0.212482678298;TFDP1:0.209597151338;NANOG{mouse}:0.183916559949;ZBTB6:0.174146695315;ZNF238:0.163355151028;MTF1:0.156376519458;NFE2L2:0.0988191871385;TBP:0.0897286405154;FOXA2:0.0891956172087;HOX{A4,D4}:0.0855404066907;NKX3-2:0.0849046991832;PPARG:0.0229614305241;SMAD1..7,9:0.0158887997427;PAX6:0.00824440045023;GFI1:-0.00841357111593;MYFfamily:-0.022782972603;POU6F1:-0.0235563406185;ZFP161:-0.0274375360636;ZBTB16:-0.0481727924388;NFIX:-0.0504796768107;BACH2:-0.0528634617877;CRX:-0.0534587199843;AR:-0.0655449549645;SPZ1:-0.0846949293519;FOSL2:-0.0864102822998;SP1:-0.0879385919399;HNF1A:-0.0978753047864;ONECUT1,2:-0.105448895241;PAX5:-0.106471919901;FOS_FOS{B,L1}_JUN{B,D}:-0.121205347238;MYB:-0.125266671582;RREB1:-0.134701589393;PRRX1,2:-0.153095731184;BREu{core}:-0.166358071657;SOX2:-0.168196481136;FOXD3:-0.169305958538;REST:-0.18343393799;ZNF143:-0.186618617239;RUNX1..3:-0.192820382585;IRF1,2:-0.198036681281;SOX5:-0.209129169911;ARID5B:-0.211663681136;CEBPA,B_DDIT3:-0.214793265662;FOX{F1,F2,J1}:-0.260711567448;NFE2:-0.279043584838;PAX2:-0.283606188305;NHLH1,2:-0.311650800021;NR6A1:-0.315318198121;FOXQ1:-0.330142734705;bHLH_family:-0.332536918665;NFKB1_REL_RELA:-0.347159589347;IKZF2:-0.359507451242;RFX1:-0.373790853379;DMAP1_NCOR{1,2}_SMARC:-0.374857856632;FOXM1:-0.403665290035;ATF2:-0.405740292308;E2F1..5:-0.40991997488;CUX2:-0.412412449887;T:-0.441037085169;CDX1,2,4:-0.442706277405;FOXO1,3,4:-0.444573649574;JUN:-0.446072842782;ETS1,2:-0.485539572143;ATF5_CREB3:-0.492115481956;HOXA9_MEIS1:-0.493247089845;GATA6:-0.494476412757;ATF4:-0.500499662652;POU2F1..3:-0.502870213009;SPI1:-0.526098762113;NRF1:-0.531514516819;RORA:-0.53642081658;TGIF1:-0.537559489451;CREB1:-0.539532170831;SOX{8,9,10}:-0.549780527179;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.55224762526;TLX2:-0.55560526905;HOX{A6,A7,B6,B7}:-0.558222573982;HNF4A_NR2F1,2:-0.562620592395;NKX2-3_NKX2-5:-0.567012645424;OCT4_SOX2{dimer}:-0.602134524188;FOX{D1,D2}:-0.603592732321;LMO2:-0.603857599706;ELK1,4_GABP{A,B1}:-0.625271172583;SNAI1..3:-0.665244054513;PDX1:-0.667234210605;ALX1:-0.682408702318;EP300:-0.724308801279;IRF7:-0.724493073864;SPIB:-0.744352805412;NR5A1,2:-0.7462622601;NANOG:-0.755205860264;ELF1,2,4:-0.764177071943;YY1:-0.77980291001;NFIL3:-0.779814287483;ESRRA:-0.783323768735;NKX6-1,2:-0.800172964497;BPTF:-0.80157439893;FOXN1:-0.819532836762;ZEB1:-0.854503438349;RBPJ:-0.855753528264;FOX{I1,J2}:-0.878056719166;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.893884852864;FOXP3:-1.03435312426;NFY{A,B,C}:-1.07234055004;SREBF1,2:-1.17923185864;MYOD1:-1.24150932101;NR1H4:-1.25249372437;STAT1,3:-1.28440363087;RFX2..5_RFXANK_RFXAP:-1.42497681702;PBX1:-1.42693790254
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007862
|accession_numbers=DRX007968;DRR008840;DRZ000265;DRZ001650;CAGE
|library_id=CNhs11854
}}
}}

Revision as of 18:07, 16 October 2013


Name:neurofibroma cell line:Hs 53.T
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:cell lines
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueperipheral nervous system
dev stageNA
sexfemale
age13
cell typeschwann cell
cell lineHs 53.T
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007862
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0395
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0198
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.645
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.104
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.115
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.356
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0732
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0638
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.12
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.196
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.214
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.12
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0951
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.206
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.549
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.356
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.895
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.653
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.775
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.848
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11854

Jaspar motifP-value
MA0002.20.122
MA0003.10.737
MA0004.10.0588
MA0006.10.312
MA0007.10.486
MA0009.10.102
MA0014.10.316
MA0017.10.115
MA0018.26.62905e-5
MA0019.10.188
MA0024.13.97016e-4
MA0025.10.00371
MA0027.10.954
MA0028.13.61516e-7
MA0029.10.223
MA0030.10.0232
MA0031.10.0565
MA0035.20.164
MA0038.19.7212e-4
MA0039.20.0541
MA0040.10.97
MA0041.10.443
MA0042.10.647
MA0043.19.5516e-5
MA0046.10.313
MA0047.20.383
MA0048.10.00899
MA0050.10.00402
MA0051.10.0342
MA0052.10.522
MA0055.10.905
MA0057.10.666
MA0058.12.45783e-4
MA0059.10.244
MA0060.13.86277e-9
MA0061.10.00243
MA0062.22.36215e-15
MA0065.20.0296
MA0066.10.964
MA0067.13.16146e-4
MA0068.10.0763
MA0069.10.485
MA0070.10.767
MA0071.10.974
MA0072.10.212
MA0073.10.708
MA0074.10.707
MA0076.14.2384e-9
MA0077.10.6
MA0078.10.847
MA0079.20.902
MA0080.22.88026e-9
MA0081.11.08785e-4
MA0083.18.79074e-6
MA0084.10.503
MA0087.10.922
MA0088.10.616
MA0090.12.18479e-7
MA0091.10.192
MA0092.10.0278
MA0093.10.0365
MA0099.20.0196
MA0100.10.576
MA0101.10.00106
MA0102.20.00667
MA0103.14.80022e-4
MA0104.20.00155
MA0105.19.51161e-4
MA0106.10.402
MA0107.10.00112
MA0108.20.108
MA0111.10.212
MA0112.20.882
MA0113.10.171
MA0114.10.0188
MA0115.10.0512
MA0116.10.058
MA0117.10.384
MA0119.10.0153
MA0122.10.0469
MA0124.10.583
MA0125.10.078
MA0131.10.905
MA0135.10.0692
MA0136.11.67555e-14
MA0137.20.0205
MA0138.20.597
MA0139.10.182
MA0140.10.933
MA0141.10.421
MA0142.10.32
MA0143.10.658
MA0144.10.606
MA0145.10.775
MA0146.10.58
MA0147.10.0375
MA0148.10.405
MA0149.10.989
MA0150.10.33
MA0152.10.00175
MA0153.10.528
MA0154.10.262
MA0155.10.775
MA0156.15.34919e-11
MA0157.10.325
MA0159.10.948
MA0160.10.0253
MA0162.10.197
MA0163.10.352
MA0164.10.997
MA0258.10.872
MA0259.10.661



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11854

Novel motifP-value
10.723
100.245
1000.512
1010.35
1020.0571
1030.592
1040.697
1050.58
1060.0688
1070.0123
1080.125
1090.306
110.777
1100.675
1110.847
1120.395
1130.177
1140.329
1150.0937
1160.0207
1170.0894
1180.241
1190.279
120.338
1200.926
1210.929
1220.356
1230.64
1240.599
1250.806
1260.351
1270.413
1280.235
1290.14
130.214
1300.711
1310.821
1320.17
1330.358
1340.483
1350.658
1360.39
1370.136
1380.553
1390.355
140.265
1400.985
1410.588
1420.545
1430.956
1440.696
1450.756
1460.337
1470.0552
1480.0343
1490.0529
150.564
1500.133
1510.678
1520.0395
1530.433
1540.237
1550.0118
1560.379
1570.217
1580.00158
1590.158
160.0674
1600.774
1610.6
1620.243
1630.525
1640.471
1650.316
1660.0184
1670.737
1680.477
1690.346
170.539
180.0772
190.0772
20.507
200.47
210.104
220.703
230.0701
240.194
250.216
260.688
270.87
280.377
290.134
30.823
300.43
310.512
321.53443e-12
330.498
340.617
350.145
360.0277
370.962
380.453
390.207
40.748
400.0408
410.535
420.62
430.943
440.806
450.977
460.379
470.686
480.856
490.837
50.415
500.489
510.807
520.27
530.83
540.659
550.206
560.897
570.383
580.351
590.412
60.447
600.451
610.446
620.874
630.443
640.69
650.572
660.569
670.974
680.384
690.523
70.272
700.44
710.462
720.289
730.12
740.268
750.284
760.274
770.153
780.151
790.0143
80.127
800.285
810.73
820.67
830.292
840.926
850.0508
860.81
870.824
880.456
890.661
90.994
900.977
910.741
920.15
930.839
940.393
950.326
960.946
970.624
980.539
990.00513



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11854


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0002573 (Schwann cell)
0000125 (glial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
1192 (peripheral nervous system neoplasm)
3193 (peripheral nerve sheath neoplasm)
962 (neurofibroma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103225 (neurilemoma cell line sample)
0103046 (neurofibroma cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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