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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008040
|DRA_sample_Accession=CAGE@DRS008040
|accession_numbers=CAGE;DRX008147;DRR009019;DRZ000444;DRZ001829
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0011106
|is_a=EFO:0002091;;FF:0011106
|is_obsolete=
|is_obsolete=
|library_id=CNhs13469
|library_ids=CNhs13469
|library_ids=CNhs13469
|name=CD14+ monocytes - treated with Group A streptococci, donor1
|name=CD14+ monocytes - treated with Group A streptococci, donor1
Line 87: Line 89:
|top_motifs=FOS_FOS{B,L1}_JUN{B,D}:6.52662133855;BACH2:6.2801498846;FOSL2:6.25186733072;NFE2:5.99051151103;HLF:5.93374894033;CEBPA,B_DDIT3:5.50979281599;IRF7:5.27619717537;NFIL3:5.0132627994;IRF1,2:4.94432627653;NFE2L2:4.79347267943;NFKB1_REL_RELA:4.71834689462;PAX2:4.29615829633;FOXP3:4.0517634868;SPIB:4.0260214973;NANOG{mouse}:3.9502568968;PAX8:3.82774561065;NFATC1..3:3.59388884235;NFE2L1:3.53600885156;SPI1:3.5334890953;DMAP1_NCOR{1,2}_SMARC:3.45577303026;NR1H4:3.45059235448;ATF5_CREB3:3.3714282685;STAT5{A,B}:3.27917511649;ETS1,2:3.15123324542;ATF4:3.11746544653;JUN:2.88575817805;SREBF1,2:2.83168090553;RUNX1..3:2.70257374721;ATF6:2.69450705122;PAX3,7:2.59257421266;CDX1,2,4:2.51039214905;CREB1:2.46834450819;MAFB:2.44287525728;ATF2:2.24129141417;HSF1,2:2.18399664378;STAT2,4,6:2.0722643325;HOX{A5,B5}:1.94526297564;XBP1:1.89670057946;FOXN1:1.7875022786;FOXO1,3,4:1.74482820386;HMGA1,2:1.70097966908;RXRA_VDR{dimer}:1.62083572588;PAX1,9:1.51267036318;ALX4:1.34389304002;IKZF1:1.30455346732;ELF1,2,4:1.11468787333;PPARG:1.07840069648;PRDM1:1.02974640053;TGIF1:1.00477030726;EP300:0.973038432294;BPTF:0.916000097269;SRF:0.680611933737;HOXA9_MEIS1:0.641906588691;ZBTB16:0.474409992961;HIF1A:0.455618604524;DBP:0.435123514669;EN1,2:0.382223278994;NR3C1:0.373644763107;PAX4:0.217746292038;HMX1:0.12904419669;TBP:0.0917383472116;GLI1..3:0.0667232472703;PDX1:0.0537738718368;PITX1..3:-0.0668923162374;POU2F1..3:-0.0946850823243;OCT4_SOX2{dimer}:-0.122989797868;ESR1:-0.149630866513;IKZF2:-0.157987294561;NR6A1:-0.171540320764;RFX2..5_RFXANK_RFXAP:-0.260330442713;GATA4:-0.266318641736;SMAD1..7,9:-0.301941847876;FOXM1:-0.305961272662;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.331983134732;HBP1_HMGB_SSRP1_UBTF:-0.375587330125;TFCP2:-0.424675472497;RORA:-0.438650135528;MEF2{A,B,C,D}:-0.47740352187;TLX2:-0.484428548558;FOXL1:-0.498060295011;NANOG:-0.518444431804;MYB:-0.533165578976;EGR1..3:-0.613795548539;NKX3-1:-0.637911181122;POU5F1:-0.652341759208;SPZ1:-0.708225472035;FOXD3:-0.880040324539;T:-0.910418551831;SOX2:-0.917239450919;FOX{D1,D2}:-0.961553809778;AHR_ARNT_ARNT2:-0.969593272202;ESRRA:-0.983130073873;STAT1,3:-1.02471417624;POU3F1..4:-1.06719415153;RBPJ:-1.10708802698;TFAP4:-1.14136281199;HES1:-1.16746152966;RXR{A,B,G}:-1.17592686713;FOXP1:-1.18091586467;MZF1:-1.18119446065;VSX1,2:-1.23573201985;TAL1_TCF{3,4,12}:-1.36847252126;TEF:-1.38931748364;NFIX:-1.40952847436;ALX1:-1.43391287984;NKX2-2,8:-1.46257422523;MED-1{core}:-1.46444487815;POU6F1:-1.47400239327;ADNP_IRX_SIX_ZHX:-1.54392906137;NHLH1,2:-1.57302387966;HNF1A:-1.57336080321;ZNF384:-1.58442022945;ZBTB6:-1.59562768486;ZNF238:-1.59764409758;PRRX1,2:-1.6276950419;HNF4A_NR2F1,2:-1.64792138621;MYFfamily:-1.72827708788;AIRE:-1.72946390814;NKX2-1,4:-1.74164502659;E2F1..5:-1.78153404813;TEAD1:-1.78990294791;PAX6:-1.79309579178;CDC5L:-1.79853695774;HOX{A4,D4}:-1.80099542368;ARID5B:-1.86021690073;GTF2A1,2:-1.8676411418;REST:-1.89207296125;MTE{core}:-1.90500750907;GCM1,2:-1.92190486128;SOX5:-1.9756983215;ZFP161:-1.99002719148;BREu{core}:-2.00404691406;TBX4,5:-2.00794882869;GZF1:-2.0507162337;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.06662203889;FOX{F1,F2,J1}:-2.09234709084;TFDP1:-2.09326390302;PATZ1:-2.12398923223;GTF2I:-2.14304849364;CUX2:-2.14953705861;TFAP2B:-2.15539402526;NKX6-1,2:-2.15765434324;TP53:-2.17393786013;CRX:-2.18696088347;ZIC1..3:-2.21466236345;NKX3-2:-2.240529369;TLX1..3_NFIC{dimer}:-2.24622235755;SP1:-2.28065044298;MAZ:-2.28541295219;RFX1:-2.29028565869;GATA6:-2.297719856;SOX{8,9,10}:-2.30177341231;RREB1:-2.32157353899;MYBL2:-2.43487815952;NKX2-3_NKX2-5:-2.4712542432;UFEwm:-2.5011209282;MTF1:-2.50849597114;EVI1:-2.62968738466;ZEB1:-2.66896424958;XCPE1{core}:-2.67306598291;TFAP2{A,C}:-2.6739916399;HOX{A6,A7,B6,B7}:-2.68509102159;ONECUT1,2:-2.70956217146;HIC1:-2.73185236469;FOXA2:-2.73213323757;GFI1B:-2.74863150529;SNAI1..3:-2.81965497476;KLF4:-2.84871006313;ELK1,4_GABP{A,B1}:-2.87119500396;SOX17:-2.89240740981;ZNF148:-2.91427944869;EBF1:-2.93298345543;ZNF423:-2.95789165116;FOX{I1,J2}:-2.96715658829;POU1F1:-3.07982159448;NFY{A,B,C}:-3.16602216308;NR5A1,2:-3.3802136689;AR:-3.42336809976;PBX1:-3.43067611155;FOXQ1:-3.44736697841;PAX5:-3.49648223519;LMO2:-3.68714223227;GFI1:-3.75070072357;TOPORS:-3.81500786342;bHLH_family:-3.81899608495;NRF1:-3.87521318042;MYOD1:-3.88513415804;LEF1_TCF7_TCF7L1,2:-3.96518739265;YY1:-4.15129292152;LHX3,4:-4.27719995553;HAND1,2:-4.32310585094;ZNF143:-4.71551979531
|top_motifs=FOS_FOS{B,L1}_JUN{B,D}:6.52662133855;BACH2:6.2801498846;FOSL2:6.25186733072;NFE2:5.99051151103;HLF:5.93374894033;CEBPA,B_DDIT3:5.50979281599;IRF7:5.27619717537;NFIL3:5.0132627994;IRF1,2:4.94432627653;NFE2L2:4.79347267943;NFKB1_REL_RELA:4.71834689462;PAX2:4.29615829633;FOXP3:4.0517634868;SPIB:4.0260214973;NANOG{mouse}:3.9502568968;PAX8:3.82774561065;NFATC1..3:3.59388884235;NFE2L1:3.53600885156;SPI1:3.5334890953;DMAP1_NCOR{1,2}_SMARC:3.45577303026;NR1H4:3.45059235448;ATF5_CREB3:3.3714282685;STAT5{A,B}:3.27917511649;ETS1,2:3.15123324542;ATF4:3.11746544653;JUN:2.88575817805;SREBF1,2:2.83168090553;RUNX1..3:2.70257374721;ATF6:2.69450705122;PAX3,7:2.59257421266;CDX1,2,4:2.51039214905;CREB1:2.46834450819;MAFB:2.44287525728;ATF2:2.24129141417;HSF1,2:2.18399664378;STAT2,4,6:2.0722643325;HOX{A5,B5}:1.94526297564;XBP1:1.89670057946;FOXN1:1.7875022786;FOXO1,3,4:1.74482820386;HMGA1,2:1.70097966908;RXRA_VDR{dimer}:1.62083572588;PAX1,9:1.51267036318;ALX4:1.34389304002;IKZF1:1.30455346732;ELF1,2,4:1.11468787333;PPARG:1.07840069648;PRDM1:1.02974640053;TGIF1:1.00477030726;EP300:0.973038432294;BPTF:0.916000097269;SRF:0.680611933737;HOXA9_MEIS1:0.641906588691;ZBTB16:0.474409992961;HIF1A:0.455618604524;DBP:0.435123514669;EN1,2:0.382223278994;NR3C1:0.373644763107;PAX4:0.217746292038;HMX1:0.12904419669;TBP:0.0917383472116;GLI1..3:0.0667232472703;PDX1:0.0537738718368;PITX1..3:-0.0668923162374;POU2F1..3:-0.0946850823243;OCT4_SOX2{dimer}:-0.122989797868;ESR1:-0.149630866513;IKZF2:-0.157987294561;NR6A1:-0.171540320764;RFX2..5_RFXANK_RFXAP:-0.260330442713;GATA4:-0.266318641736;SMAD1..7,9:-0.301941847876;FOXM1:-0.305961272662;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.331983134732;HBP1_HMGB_SSRP1_UBTF:-0.375587330125;TFCP2:-0.424675472497;RORA:-0.438650135528;MEF2{A,B,C,D}:-0.47740352187;TLX2:-0.484428548558;FOXL1:-0.498060295011;NANOG:-0.518444431804;MYB:-0.533165578976;EGR1..3:-0.613795548539;NKX3-1:-0.637911181122;POU5F1:-0.652341759208;SPZ1:-0.708225472035;FOXD3:-0.880040324539;T:-0.910418551831;SOX2:-0.917239450919;FOX{D1,D2}:-0.961553809778;AHR_ARNT_ARNT2:-0.969593272202;ESRRA:-0.983130073873;STAT1,3:-1.02471417624;POU3F1..4:-1.06719415153;RBPJ:-1.10708802698;TFAP4:-1.14136281199;HES1:-1.16746152966;RXR{A,B,G}:-1.17592686713;FOXP1:-1.18091586467;MZF1:-1.18119446065;VSX1,2:-1.23573201985;TAL1_TCF{3,4,12}:-1.36847252126;TEF:-1.38931748364;NFIX:-1.40952847436;ALX1:-1.43391287984;NKX2-2,8:-1.46257422523;MED-1{core}:-1.46444487815;POU6F1:-1.47400239327;ADNP_IRX_SIX_ZHX:-1.54392906137;NHLH1,2:-1.57302387966;HNF1A:-1.57336080321;ZNF384:-1.58442022945;ZBTB6:-1.59562768486;ZNF238:-1.59764409758;PRRX1,2:-1.6276950419;HNF4A_NR2F1,2:-1.64792138621;MYFfamily:-1.72827708788;AIRE:-1.72946390814;NKX2-1,4:-1.74164502659;E2F1..5:-1.78153404813;TEAD1:-1.78990294791;PAX6:-1.79309579178;CDC5L:-1.79853695774;HOX{A4,D4}:-1.80099542368;ARID5B:-1.86021690073;GTF2A1,2:-1.8676411418;REST:-1.89207296125;MTE{core}:-1.90500750907;GCM1,2:-1.92190486128;SOX5:-1.9756983215;ZFP161:-1.99002719148;BREu{core}:-2.00404691406;TBX4,5:-2.00794882869;GZF1:-2.0507162337;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.06662203889;FOX{F1,F2,J1}:-2.09234709084;TFDP1:-2.09326390302;PATZ1:-2.12398923223;GTF2I:-2.14304849364;CUX2:-2.14953705861;TFAP2B:-2.15539402526;NKX6-1,2:-2.15765434324;TP53:-2.17393786013;CRX:-2.18696088347;ZIC1..3:-2.21466236345;NKX3-2:-2.240529369;TLX1..3_NFIC{dimer}:-2.24622235755;SP1:-2.28065044298;MAZ:-2.28541295219;RFX1:-2.29028565869;GATA6:-2.297719856;SOX{8,9,10}:-2.30177341231;RREB1:-2.32157353899;MYBL2:-2.43487815952;NKX2-3_NKX2-5:-2.4712542432;UFEwm:-2.5011209282;MTF1:-2.50849597114;EVI1:-2.62968738466;ZEB1:-2.66896424958;XCPE1{core}:-2.67306598291;TFAP2{A,C}:-2.6739916399;HOX{A6,A7,B6,B7}:-2.68509102159;ONECUT1,2:-2.70956217146;HIC1:-2.73185236469;FOXA2:-2.73213323757;GFI1B:-2.74863150529;SNAI1..3:-2.81965497476;KLF4:-2.84871006313;ELK1,4_GABP{A,B1}:-2.87119500396;SOX17:-2.89240740981;ZNF148:-2.91427944869;EBF1:-2.93298345543;ZNF423:-2.95789165116;FOX{I1,J2}:-2.96715658829;POU1F1:-3.07982159448;NFY{A,B,C}:-3.16602216308;NR5A1,2:-3.3802136689;AR:-3.42336809976;PBX1:-3.43067611155;FOXQ1:-3.44736697841;PAX5:-3.49648223519;LMO2:-3.68714223227;GFI1:-3.75070072357;TOPORS:-3.81500786342;bHLH_family:-3.81899608495;NRF1:-3.87521318042;MYOD1:-3.88513415804;LEF1_TCF7_TCF7L1,2:-3.96518739265;YY1:-4.15129292152;LHX3,4:-4.27719995553;HAND1,2:-4.32310585094;ZNF143:-4.71551979531
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008040
|accession_numbers=DRX008147;DRR009019;DRZ000444;DRZ001829;CAGE
|library_id=CNhs13469
}}
}}

Revision as of 18:20, 17 October 2013


Name:CD14+ monocytes - treated with Group A streptococci, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13469
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexfemale
age69
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD3-5
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008040
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13469 CAGE DRX008147 DRR009019
Accession ID Hg19

Library idBAMCTSS
CNhs13469 DRZ000444 DRZ001829
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral1.101
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis7.565692e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.834
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.489
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.116
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.116
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.347
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.575
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.952
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.254
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.865
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.609
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0.497
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.474
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.433
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.162
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.814
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.309
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.538
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.411
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.538
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.28
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.67
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.848
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.453
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.958
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.488
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.975
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole1.024
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.708
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.609
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.532
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.697
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.347
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.453
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.729
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature1.002
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.403
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.853
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.347
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.283
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.675
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0281
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.283
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.435
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.609
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.842
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.453
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.283
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.207
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.283
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.283
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13469

Jaspar motifP-value
MA0002.22.71172e-8
MA0003.10.757
MA0004.10.462
MA0006.11
MA0007.10.654
MA0009.10.496
MA0014.10.877
MA0017.10.189
MA0018.20.0772
MA0019.10.525
MA0024.10.00563
MA0025.10.00446
MA0027.10.849
MA0028.10.105
MA0029.10.129
MA0030.10.117
MA0031.10.251
MA0035.20.247
MA0038.10.427
MA0039.20.549
MA0040.10.636
MA0041.10.931
MA0042.10.607
MA0043.11.59199e-7
MA0046.10.00878
MA0047.20.195
MA0048.10.538
MA0050.13.03224e-15
MA0051.13.52811e-8
MA0052.10.0542
MA0055.10.431
MA0057.10.442
MA0058.10.279
MA0059.10.203
MA0060.13.12799e-10
MA0061.18.18623e-14
MA0062.20.959
MA0065.20.0341
MA0066.10.0222
MA0067.13.4348e-5
MA0068.10.621
MA0069.10.834
MA0070.10.0225
MA0071.10.384
MA0072.10.628
MA0073.10.426
MA0074.10.108
MA0076.10.112
MA0077.10.277
MA0078.10.381
MA0079.20.128
MA0080.23.80264e-11
MA0081.14.86425e-4
MA0083.10.749
MA0084.10.548
MA0087.10.987
MA0088.10.48
MA0090.10.499
MA0091.10.592
MA0092.10.28
MA0093.10.524
MA0099.28.47942e-44
MA0100.10.822
MA0101.16.1752e-16
MA0102.23.78027e-9
MA0103.10.0682
MA0104.20.563
MA0105.14.08935e-18
MA0106.10.815
MA0107.18.63178e-20
MA0108.20.279
MA0111.10.397
MA0112.22.2103e-4
MA0113.10.819
MA0114.10.24
MA0115.10.795
MA0116.12.21837e-4
MA0117.10.0738
MA0119.10.141
MA0122.10.826
MA0124.10.574
MA0125.10.203
MA0131.10.389
MA0135.10.232
MA0136.12.9648e-11
MA0137.20.283
MA0138.20.472
MA0139.10.794
MA0140.10.294
MA0141.10.143
MA0142.10.706
MA0143.10.968
MA0144.10.107
MA0145.10.564
MA0146.10.481
MA0147.10.615
MA0148.10.541
MA0149.10.224
MA0150.17.36638e-19
MA0152.10.698
MA0153.10.00101
MA0154.13.36551e-4
MA0155.10.937
MA0156.11.67345e-7
MA0157.10.738
MA0159.10.0335
MA0160.10.0963
MA0162.10.712
MA0163.12.94002e-8
MA0164.10.641
MA0258.10.0138
MA0259.10.722



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13469

Novel motifP-value
10.094
100.0233
1000.988
1010.793
1020.914
1030.253
1040.523
1050.128
1069.54512e-4
1070.178
1080.678
1090.332
110.127
1100.181
1110.0625
1120.296
1130.473
1140.0208
1150.28
1160.86
1170.0709
1180.176
1190.143
120.356
1200.77
1210.618
1220.709
1230.304
1240.503
1250.199
1260.255
1270.513
1280.0463
1290.329
130.098
1300.258
1310.902
1320.0933
1330.496
1340.436
1350.928
1360.879
1370.0512
1380.349
1390.0611
140.534
1400.49
1410.277
1420.031
1430.0179
1440.508
1450.256
1460.827
1470.894
1480.0138
1490.858
150.146
1500.375
1510.397
1520.327
1530.549
1540.694
1550.889
1560.947
1570.521
1580.0697
1590.16
160.318
1600.35
1610.428
1620.275
1630.0981
1640.0918
1650.292
1660.778
1670.25
1680.174
1690.0125
170.22
180.0818
190.448
20.53
200.167
210.756
220.334
230.0322
240.482
250.531
260.0465
270.521
280.41
290.244
30.111
300.407
310.756
320.642
330.251
340.776
350.108
360.0526
370.0786
380.362
390.745
40.833
400.18
410.0252
420.332
430.0208
440.634
450.836
460.17
470.478
480.451
490.116
50.311
500.988
510.473
520.399
530.614
540.421
550.462
560.631
570.831
580.168
590.217
60.818
600.051
610.722
620.083
630.469
640.445
650.201
660.196
670.469
680.808
690.358
70.266
700.0523
710.0235
720.142
730.214
740.0318
750.129
760.148
770.502
780.0938
790.86
80.319
800.225
810.313
820.129
830.0306
840.0904
850.029
860.0825
870.537
880.803
890.213
90.323
900.102
910.392
920.278
930.527
940.0858
950.39
960.352
970.552
980.0996
990.0894



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13469


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0011106 (human CD14-positive monocytes - treated with Group A streptococci sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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