FFCP PHASE1:Hg19::chr1:22973985..22973997,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=277bp_to_CU679234_5end | |||
|coexpression_cluster_id=C67 | |||
|description=CAGE_peak_2_at_CU679234_5end | |||
|id=chr1:22973985..22973997,- | |||
|ontology_enrichment_celltype=CL:0000235!1.07e-09!10;CL:0002619!1.33e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:0000235;6.94e-40;6!CL:0002619;3.11e-30;3!CL:0000840;4.17e-15;5!CL:0000990;2.96e-10;8!CL:0000451;1.76e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,7.53e-40,6;CL:0002619,3.43e-30,3;CL:0002194,7.83e-18,59;CL:0000576,7.83e-18,59;CL:0000040,7.83e-18,59;CL:0000559,7.83e-18,59;CL:0002009,3.34e-17,61;CL:0000839,8.56e-16,66;CL:0000557,1.55e-15,67;CL:0000840,3.98e-15,5;CL:0001029,3.98e-15,5;CL:0000766,2.34e-14,72;CL:0000990,2.87e-10,8;CL:0000763,4.75e-09,108;CL:0000049,4.75e-09,108;CL:0000451,1.72e-08,10;CL:0002087,2.12e-08,115;CL:0002031,5.56e-08,120;CL:0000738,7.56e-07,136 | |||
|ontology_enrichment_development_v019=UBERON:0010115;1.15e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.86e-42!115;UBERON:0003075!7.69e-13!86;UBERON:0007284!7.69e-13!86;UBERON:0001049!1.45e-12!57;UBERON:0005068!1.45e-12!57;UBERON:0006241!1.45e-12!57;UBERON:0007135!1.45e-12!57;UBERON:0002346!5.59e-12!90;UBERON:0002616!1.20e-10!59;UBERON:0002780!1.75e-10!41;UBERON:0001890!1.75e-10!41;UBERON:0006240!1.75e-10!41;UBERON:0005743!2.44e-10!86;UBERON:0000062!2.86e-10!511;UBERON:0003080!3.74e-10!42;UBERON:0001017!5.18e-10!82;UBERON:0001893!5.65e-10!34;UBERON:0000955!2.91e-09!69;UBERON:0006238!2.91e-09!69;UBERON:0002791!6.68e-09!33;UBERON:0000073!7.88e-09!94;UBERON:0001016!7.88e-09!94;UBERON:0002020!1.03e-08!34;UBERON:0003528!1.03e-08!34;UBERON:0003056!7.14e-08!61;UBERON:0001869!1.01e-07!32;UBERON:0002298!2.12e-07!8;UBERON:0000467!7.76e-07!625;UBERON:0000480!8.49e-07!626;UBERON:0002308!8.59e-07!9;UBERON:0000125!8.59e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002363;1.15e-10;1!UBERON:0001301;1.15e-10;1!UBERON:0002171;1.15e-10;1!UBERON:0002426;1.15e-10;1!UBERON:0003831;1.15e-10;1!UBERON:0003898;1.15e-10;1!UBERON:0004830;1.15e-10;1!UBERON:0006518;1.15e-10;1!UBERON:0008949;1.15e-10;1!UBERON:0003830;1.15e-10;1!UBERON:0005175;1.15e-10;1!UBERON:0001774;1.15e-10;1!UBERON:0000101;1.15e-10;1!UBERON:0001103;1.15e-10;1!UBERON:0002167;1.15e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.60e-13,76;UBERON:0002405,6.75e-13,93;UBERON:0001474,2.01e-12,82;UBERON:0002390,3.78e-12,98;UBERON:0003061,3.78e-12,98;UBERON:0004765,3.52e-11,90;UBERON:0002193,7.38e-11,108;UBERON:0002426,8.22e-11,1;UBERON:0003831,8.22e-11,1;UBERON:0003898,8.22e-11,1;UBERON:0004830,8.22e-11,1;UBERON:0003830,8.22e-11,1;UBERON:0005175,8.22e-11,1;UBERON:0001774,8.22e-11,1;UBERON:0001103,8.22e-11,1;UBERON:0010084,8.22e-11,1;UBERON:0001301,9.97e-11,1;UBERON:0002171,1.21e-10,1;UBERON:0006518,1.21e-10,1;UBERON:0008949,1.21e-10,1;UBERON:0000101,1.21e-10,1;UBERON:0002167,1.21e-10,1;UBERON:0002363,1.61e-10,1;UBERON:0007645,1.61e-10,1;UBERON:0007647,1.61e-10,1;UBERON:0010115,1.61e-10,1;UBERON:0001434,6.66e-10,100;UBERON:0003081,5.99e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3001118150365,6.47787332037959,8.24241816429397,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0,0,2.59637914923747,2.26368658489047,6.64789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23108503043699,0.468008530278475,2.52672975890838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64871341923571,6.52934218861764,4.21667878966063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.723578631752448,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.796118080530053,0,0,0,0,0.202203398942031,1.60515529459758,0.234264445725339,0,0,0,0,2.41981432097328,0,1.20054501294127,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.279282401272254,0,0.717873024576814,0.199679000498991,0.429226048136571,0.223171457441873,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0.879313402068495,1.32506888912221,0,1.05786081394152,0,0,0.320362237703084,0,1.24271716604159,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0.0679697329768317,0.131545547125698,0,0,0.235479278551542,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0.437119121007915,0,0.245148321753905,0,0,0.297046400327086,0,0,1.59772660565751,0.902410431630081,0,0,0,0,0,0,0.286679166302903,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0,0,0.193766729508018,0.31037357147929,0,0,0,0,0.342233301085281,0.336760265072938,0.215166616178029,0.332660356546013,0,0,0,0,0,0,0.813792356631477,0.665756774185513,1.20764276154616,0 | |||
|short_description=p2@CU679234 | |||
}} |
Revision as of 16:57, 10 January 2014
Short description: | p2@CU679234 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CU679234_5end |
Coexpression cluster: | C67_CD14_Monocytederived_Macrophage_dura_Dendritic_spleen_lung |
Association with transcript: | 277bp_to_CU679234_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 7.53e-40 | 6 |
adult endothelial progenitor cell | 3.43e-30 | 3 |
monopoietic cell | 7.83e-18 | 59 |
monocyte | 7.83e-18 | 59 |
monoblast | 7.83e-18 | 59 |
promonocyte | 7.83e-18 | 59 |
macrophage dendritic cell progenitor | 3.34e-17 | 61 |
myeloid lineage restricted progenitor cell | 8.56e-16 | 66 |
granulocyte monocyte progenitor cell | 1.55e-15 | 67 |
immature conventional dendritic cell | 3.98e-15 | 5 |
common dendritic progenitor | 3.98e-15 | 5 |
myeloid leukocyte | 2.34e-14 | 72 |
conventional dendritic cell | 2.87e-10 | 8 |
myeloid cell | 4.75e-09 | 108 |
common myeloid progenitor | 4.75e-09 | 108 |
dendritic cell | 1.72e-08 | 10 |
nongranular leukocyte | 2.12e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 5.56e-08 | 120 |
leukocyte | 7.56e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.60e-13 | 76 |
immune system | 6.75e-13 | 93 |
bone element | 2.01e-12 | 82 |
hematopoietic system | 3.78e-12 | 98 |
blood island | 3.78e-12 | 98 |
skeletal element | 3.52e-11 | 90 |
hemolymphoid system | 7.38e-11 | 108 |
chest muscle | 8.22e-11 | 1 |
respiratory system muscle | 8.22e-11 | 1 |
skeletal muscle of trunk | 8.22e-11 | 1 |
respiratory system skeletal muscle | 8.22e-11 | 1 |
thoracic segment muscle | 8.22e-11 | 1 |
chest organ | 8.22e-11 | 1 |
muscle of trunk | 8.22e-11 | 1 |
diaphragm | 8.22e-11 | 1 |
future diaphragm | 8.22e-11 | 1 |
epididymis | 9.97e-11 | 1 |
lower lobe of right lung | 1.21e-10 | 1 |
right lung lobe | 1.21e-10 | 1 |
lower lobe of lung | 1.21e-10 | 1 |
lobe of lung | 1.21e-10 | 1 |
right lung | 1.21e-10 | 1 |
dura mater | 1.61e-10 | 1 |
future meninx | 1.61e-10 | 1 |
ectomeninx | 1.61e-10 | 1 |
future dura mater | 1.61e-10 | 1 |
skeletal system | 6.66e-10 | 100 |
lateral plate mesoderm | 5.99e-07 | 203 |