FFCP PHASE1:Hg19::chr1:171711177..171711234,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8674 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12645 | |||
|TSSclassifier=strong | |||
|UniProt=O75379 | |||
|association_with_transcript=0bp_to_ENST00000367740,ENST00000415773,ENST00000474047,ENST00000482519,uc001ghw.1,uc001ghx.1,uc001ghy.1_5end | |||
|description=CAGE_peak_1_at_VAMP4_5end | |||
|id=chr1:171711177..171711234,- | |||
|ontology_enrichment_celltype=CL:0002087!2.64e-10!119;CL:0002031!1.75e-09!124;CL:0000738!5.22e-09!140;CL:0000791!6.33e-08!18;CL:0000789!6.33e-08!18;CL:0002420!6.33e-08!18;CL:0002419!6.33e-08!18;CL:0000790!6.33e-08!18;CL:0000839!2.08e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.61e-08;18!CL:0000789;5.61e-08;18!CL:0002419;5.61e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,6.57e-11,115;CL:0002031,4.96e-10,120;CL:0000738,1.73e-09,136;CL:0000839,4.22e-08,66;CL:0000791,6.33e-08,18;CL:0000789,6.33e-08,18;CL:0002420,6.33e-08,18;CL:0002419,6.33e-08,18;CL:0000790,6.33e-08,18;CL:0002194,2.25e-07,59;CL:0000576,2.25e-07,59;CL:0000040,2.25e-07,59;CL:0000559,2.25e-07,59;CL:0000473,2.86e-07,48;CL:0000234,2.86e-07,48;CL:0000557,5.94e-07,67;CL:0002009,9.63e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000790;5.61e-08;18!UBERON:0006601;1.78e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.32e-33!115;UBERON:0001049!3.32e-21!57;UBERON:0005068!3.32e-21!57;UBERON:0006241!3.32e-21!57;UBERON:0007135!3.32e-21!57;UBERON:0003080!7.23e-18!42;UBERON:0002780!1.05e-17!41;UBERON:0001890!1.05e-17!41;UBERON:0006240!1.05e-17!41;UBERON:0000955!1.45e-16!69;UBERON:0006238!1.45e-16!69;UBERON:0002616!8.08e-16!59;UBERON:0001017!1.94e-14!82;UBERON:0002020!5.16e-14!34;UBERON:0003528!5.16e-14!34;UBERON:0000153!7.98e-14!129;UBERON:0007811!7.98e-14!129;UBERON:0001893!1.33e-13!34;UBERON:0002346!2.23e-13!90;UBERON:0005743!3.90e-13!86;UBERON:0002791!4.03e-13!33;UBERON:0003075!4.26e-13!86;UBERON:0007284!4.26e-13!86;UBERON:0000073!5.27e-13!94;UBERON:0001016!5.27e-13!94;UBERON:0001869!7.40e-13!32;UBERON:0000033!1.25e-12!123;UBERON:0002619!1.01e-10!22;UBERON:0003056!2.81e-10!61;UBERON:0001950!1.19e-09!20;UBERON:0000956!2.89e-09!25;UBERON:0000203!2.89e-09!25;UBERON:0000924!4.96e-08!173;UBERON:0006601!4.96e-08!173;UBERON:0004121!1.01e-07!169;UBERON:0002390!1.04e-07!102;UBERON:0003061!1.04e-07!102;UBERON:0004765!2.97e-07!101;UBERON:0001434!2.97e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;6.52e-13;41!UBERON:0001890;6.52e-13;41!UBERON:0003528;6.13e-12;34!UBERON:0002020;6.13e-12;34!UBERON:0000073;1.05e-11;53!UBERON:0002616;1.05e-11;53!UBERON:0002791;1.06e-11;32!UBERON:0001869;1.22e-11;32!UBERON:0001893;1.43e-11;34!UBERON:0002619;1.02e-10;22!UBERON:0007023;5.81e-10;114!UBERON:0001950;1.24e-09;20!UBERON:0000956;2.83e-09;25!UBERON:0000203;2.83e-09;25!UBERON:0000955;3.75e-08;68!UBERON:0001017;1.12e-07;75!UBERON:0001016;2.09e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.93e-33,114;UBERON:0001049,5.04e-21,56;UBERON:0005068,5.04e-21,56;UBERON:0006241,5.04e-21,56;UBERON:0007135,5.04e-21,56;UBERON:0000073,1.60e-19,53;UBERON:0002616,1.60e-19,53;UBERON:0002780,1.05e-17,41;UBERON:0001890,1.05e-17,41;UBERON:0003080,1.05e-17,41;UBERON:0006240,1.05e-17,41;UBERON:0000955,2.30e-16,68;UBERON:0006238,2.30e-16,68;UBERON:0001017,3.09e-14,81;UBERON:0003528,5.16e-14,34;UBERON:0002020,5.16e-14,34;UBERON:0001016,5.24e-14,89;UBERON:0001893,1.33e-13,34;UBERON:0002346,1.50e-13,86;UBERON:0003075,2.78e-13,82;UBERON:0007284,2.78e-13,82;UBERON:0002791,7.01e-13,32;UBERON:0001869,7.40e-13,32;UBERON:0002619,1.01e-10,22;UBERON:0003056,1.71e-10,61;UBERON:0001950,1.19e-09,20;UBERON:0010314,1.86e-09,132;UBERON:0000956,2.89e-09,25;UBERON:0000203,2.89e-09,25;UBERON:0010371,1.45e-08,104;UBERON:0002390,3.05e-08,98;UBERON:0003061,3.05e-08,98;UBERON:0004121,6.84e-08,171;UBERON:0000924,6.84e-08,171;UBERON:0006601,6.84e-08,171;UBERON:0001434,3.21e-07,100;UBERON:0002371,8.78e-07,76 | |||
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| |||
|short_description=p1@VAMP4 | |||
}} |
Revision as of 22:16, 10 January 2014
Short description: | p1@VAMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VAMP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000367740, ENST00000415773, ENST00000474047, ENST00000482519, uc001ghw.1, uc001ghx.1, uc001ghy.1_5end |
EntrezGene: | VAMP4 |
HGNC: | 12645 |
UniProt: | O75379 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 6.57e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 4.96e-10 | 120 |
leukocyte | 1.73e-09 | 136 |
myeloid lineage restricted progenitor cell | 4.22e-08 | 66 |
mature alpha-beta T cell | 6.33e-08 | 18 |
alpha-beta T cell | 6.33e-08 | 18 |
immature T cell | 6.33e-08 | 18 |
mature T cell | 6.33e-08 | 18 |
immature alpha-beta T cell | 6.33e-08 | 18 |
monopoietic cell | 2.25e-07 | 59 |
monocyte | 2.25e-07 | 59 |
monoblast | 2.25e-07 | 59 |
promonocyte | 2.25e-07 | 59 |
defensive cell | 2.86e-07 | 48 |
phagocyte | 2.86e-07 | 48 |
granulocyte monocyte progenitor cell | 5.94e-07 | 67 |
macrophage dendritic cell progenitor | 9.63e-07 | 61 |