FFCP PHASE1:Hg19::chr1:203148531..203148567,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-6bp_to_CU678996_5end | |||
|coexpression_cluster_id=C283 | |||
|description=CAGE_peak_4_at_CU678996_5end | |||
|id=chr1:203148531..203148567,+ | |||
|ontology_enrichment_celltype=CL:0000153!5.90e-11!9;CL:0000447!5.90e-11!9;CL:0000235!2.55e-09!10;CL:0000135!3.00e-09!3;CL:0000386!3.00e-09!3;CL:0000388!3.00e-09!3;CL:0000499!3.17e-08!27;CL:0000667!9.11e-08!6;CL:0000058!9.11e-08!6;CL:0000138!9.11e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000153;7.63e-35;9!CL:0000447;7.63e-35;9!CL:0000138;1.48e-23;6!CL:0000235;1.66e-23;6!CL:0000327;9.06e-21;15!CL:0000499;2.81e-19;28!CL:0002540;9.70e-14;6!CL:0000135;4.47e-13;3!CL:0000388;4.47e-13;3!CL:0000214;5.04e-13;3!CL:0002092;1.89e-08;10!CL:0000182;5.43e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,8.34e-35,9;CL:0000447,8.34e-35,9;CL:0000058,1.66e-23,6;CL:0000138,1.66e-23,6;CL:0000235,1.86e-23,6;CL:0000327,9.54e-21,15;CL:0000499,2.95e-19,28;CL:0002540,9.49e-14,6;CL:0000135,4.61e-13,3;CL:0000388,4.61e-13,3;CL:0000214,4.89e-13,3;CL:0002092,1.86e-08,10;CL:0000151,2.21e-08,36;CL:0000182,5.26e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0010115;6.06e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;6.06e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,6.33e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002780!2.03e-10!41;UBERON:0001890!2.03e-10!41;UBERON:0006240!2.03e-10!41;UBERON:0003080!4.33e-10!42;UBERON:0000043!3.00e-09!3;UBERON:0002308!4.48e-09!9;UBERON:0000125!4.48e-09!9;UBERON:0002420!5.55e-09!9;UBERON:0007245!5.55e-09!9;UBERON:0010009!5.55e-09!9;UBERON:0010011!5.55e-09!9;UBERON:0000454!5.55e-09!9;UBERON:0002791!1.18e-08!33;UBERON:0001049!1.27e-08!57;UBERON:0005068!1.27e-08!57;UBERON:0006241!1.27e-08!57;UBERON:0007135!1.27e-08!57;UBERON:0002020!1.92e-08!34;UBERON:0003528!1.92e-08!34;UBERON:0001893!2.50e-08!34;UBERON:0005743!2.59e-08!86;UBERON:0009663!2.78e-08!7;UBERON:0002616!3.36e-08!59;UBERON:0000955!3.47e-08!69;UBERON:0006238!3.47e-08!69;UBERON:0001017!4.50e-08!82;UBERON:0000073!7.58e-08!94;UBERON:0001016!7.58e-08!94;UBERON:0003056!1.00e-07!61;UBERON:0007023!3.50e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;4.47e-13;3!UBERON:0000043;4.47e-13;3!UBERON:0007845;4.47e-13;3!UBERON:0006915;5.04e-13;3!UBERON:0007616;5.04e-13;3!UBERON:0002217;5.04e-13;3!UBERON:0002018;5.04e-13;3!UBERON:0002363;6.06e-10;1!UBERON:0001282;6.06e-10;1!UBERON:0009842;6.06e-10;1!UBERON:0003704;6.06e-10;1!UBERON:0001171;6.06e-10;1!UBERON:0001172;6.06e-10;1!UBERON:0002371;4.05e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,4.61e-13,3;UBERON:0000043,4.61e-13,3;UBERON:0007845,4.61e-13,3;UBERON:0006915,4.89e-13,3;UBERON:0007616,4.89e-13,3;UBERON:0002217,4.89e-13,3;UBERON:0002018,4.89e-13,3;UBERON:0001282,5.30e-10,1;UBERON:0009842,5.30e-10,1;UBERON:0003704,5.30e-10,1;UBERON:0001171,5.30e-10,1;UBERON:0001172,5.30e-10,1;UBERON:0002363,7.55e-10,1;UBERON:0007645,7.55e-10,1;UBERON:0007647,7.55e-10,1;UBERON:0010115,7.55e-10,1;UBERON:0001434,4.01e-07,100 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.3372698286148,3.00802746381534,5.35932120155048,0,2.43317435151318,0,0,0,0,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94848165003288,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0.492434012174795,4.21207677250628,4.60756603095058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,1.2162378064119,0.502257091432126,6.32501818449095,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532685175939381,0.0821271560138091,0,0.232420756919918,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462145851343933,0,0,0,0.290033387828457,0,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7664894001809,7.57378253807774,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.921722292925374,1.78940886313933,0.834245708559542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,2.96249345202203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0,2.0851571277401,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0.577901179803038,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72844298240254,0,0,0,0,0,0.732761168390412,0,0,0.52893040697076,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0.250381861413,0,0,0.0620964029413835,0,0,0,0,0,0,0,0.149254802886874,0,0,1.32582103692562,14.0878024981442,4.44905610798268,0,0,0,0,0,0.449803112163605,0,0,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0.673498977531838,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,2.57232014156128,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0.62164849248911,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,7.06790534516827,57.3097779502959,0.865253124247578,0,0,0,0,0,0,0,0,0,0.829169439458779,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@CU678996 | |||
}} |
Revision as of 23:28, 10 January 2014
Short description: | p4@CU678996 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CU678996_5end |
Coexpression cluster: | C283_tenocyte_Chondrocyte_mesenchymal_Macrophage_pleomorphic_Synoviocyte_cholangiocellular |
Association with transcript: | -6bp_to_CU678996_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 8.34e-35 | 9 |
carbohydrate secreting cell | 8.34e-35 | 9 |
chondroblast | 1.66e-23 | 6 |
chondrocyte | 1.66e-23 | 6 |
macrophage | 1.86e-23 | 6 |
extracellular matrix secreting cell | 9.54e-21 | 15 |
stromal cell | 2.95e-19 | 28 |
mesenchymal stem cell of the bone marrow | 9.49e-14 | 6 |
fibrocyte | 4.61e-13 | 3 |
tendon cell | 4.61e-13 | 3 |
synovial cell | 4.89e-13 | 3 |
bone marrow cell | 1.86e-08 | 10 |
secretory cell | 2.21e-08 | 36 |
hepatocyte | 5.26e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 4.61e-13 | 3 |
tendon | 4.61e-13 | 3 |
regular connective tissue | 4.61e-13 | 3 |
stratified squamous epithelium | 4.89e-13 | 3 |
layer of synovial tissue | 4.89e-13 | 3 |
synovial joint | 4.89e-13 | 3 |
synovial membrane of synovial joint | 4.89e-13 | 3 |
intralobular bile duct | 5.30e-10 | 1 |
acinus | 5.30e-10 | 1 |
intrahepatic bile duct | 5.30e-10 | 1 |
portal lobule | 5.30e-10 | 1 |
hepatic acinus | 5.30e-10 | 1 |
dura mater | 7.55e-10 | 1 |
future meninx | 7.55e-10 | 1 |
ectomeninx | 7.55e-10 | 1 |
future dura mater | 7.55e-10 | 1 |
skeletal system | 4.01e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 6.33e-10 | 1 |