FFCP PHASE1:Hg19::chr11:47235980..47236028,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1643 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2718 | |||
|TSSclassifier=weak | |||
|UniProt=Q92466 | |||
|association_with_transcript=-464bp_to_ENST00000256996,ENST00000378600,ENST00000378601,ENST00000378603,NM_000107,uc001neb.2,uc001nec.2,uc001ned.2,uc001nee.2,uc009yli.1_5end | |||
|description=CAGE_peak_3_at_DDB2_5end | |||
|id=chr11:47235980..47236028,+ | |||
|ontology_enrichment_celltype=CL:0000557!8.22e-24!71;CL:0000839!3.45e-22!70;CL:0002009!7.78e-22!65;CL:0000860!1.06e-20!45;CL:0002194!1.21e-20!63;CL:0000576!1.21e-20!63;CL:0000040!1.21e-20!63;CL:0000559!1.21e-20!63;CL:0002057!3.75e-19!42;CL:0000766!5.11e-18!76;CL:0002031!4.16e-14!124;CL:0000763!1.53e-13!112;CL:0000049!1.53e-13!112;CL:0000738!9.41e-13!140;CL:0002087!4.51e-12!119;CL:0002032!2.86e-09!165;CL:0000837!2.86e-09!165;CL:0000037!4.72e-09!172;CL:0000566!4.72e-09!172;CL:0000988!4.07e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.61e-15;33!CL:0002057;6.61e-15;33!CL:0000576;1.33e-13;48!CL:0000473;9.97e-13;39!CL:0000234;9.97e-13;39!CL:0000766;2.10e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,6.51e-25,67;CL:0000839,3.83e-23,66;CL:0002009,8.70e-23,61;CL:0002194,1.71e-21,59;CL:0000576,1.71e-21,59;CL:0000040,1.71e-21,59;CL:0000559,1.71e-21,59;CL:0000473,6.90e-21,48;CL:0000234,6.90e-21,48;CL:0000860,1.30e-20,42;CL:0002057,1.30e-20,42;CL:0000766,1.86e-19,72;CL:0000763,6.35e-15,108;CL:0000049,6.35e-15,108;CL:0002031,9.70e-14,120;CL:0000738,2.82e-13,136;CL:0002087,1.18e-11,115;CL:0000037,1.04e-09,168;CL:0002032,1.21e-09,161;CL:0000837,1.21e-09,161;CL:0000988,4.96e-08,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.76e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.35e-21!80;UBERON:0001474!8.98e-19!86;UBERON:0002390!2.38e-15!102;UBERON:0003061!2.38e-15!102;UBERON:0002405!4.58e-15!115;UBERON:0004765!1.06e-14!101;UBERON:0001434!1.06e-14!101;UBERON:0002193!2.54e-13!112;UBERON:0001049!1.20e-09!57;UBERON:0005068!1.20e-09!57;UBERON:0006241!1.20e-09!57;UBERON:0007135!1.20e-09!57;UBERON:0000955!3.91e-08!69;UBERON:0006238!3.91e-08!69;UBERON:0002780!6.20e-08!41;UBERON:0001890!6.20e-08!41;UBERON:0006240!6.20e-08!41;UBERON:0000062!1.82e-07!511;UBERON:0001017!2.13e-07!82;UBERON:0002020!2.24e-07!34;UBERON:0003528!2.24e-07!34;UBERON:0003080!3.02e-07!42;UBERON:0002616!4.03e-07!59;UBERON:0002791!6.20e-07!33;UBERON:0005743!8.05e-07!86;UBERON:0001893!8.35e-07!34 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.13e-21,76;UBERON:0001474,8.02e-19,82;UBERON:0004765,6.63e-17,90;UBERON:0002405,2.45e-16,93;UBERON:0002390,1.56e-15,98;UBERON:0003061,1.56e-15,98;UBERON:0002193,8.82e-14,108;UBERON:0001434,4.33e-13,100;UBERON:0001049,2.04e-10,56;UBERON:0005068,2.04e-10,56;UBERON:0006241,2.04e-10,56;UBERON:0007135,2.04e-10,56;UBERON:0000073,6.45e-10,53;UBERON:0002616,6.45e-10,53;UBERON:0000955,5.11e-09,68;UBERON:0006238,5.11e-09,68;UBERON:0001017,6.77e-08,81;UBERON:0002780,1.61e-07,41;UBERON:0001890,1.61e-07,41;UBERON:0003080,1.61e-07,41;UBERON:0006240,1.61e-07,41;UBERON:0001016,2.56e-07,89;UBERON:0003528,6.10e-07,34;UBERON:0002020,6.10e-07,34 | |||
|phase1_expression=0.726713517082227,1.71280419112787,0.986680828671798,3.00219895059391,0,0.872338524100369,5.06599756336621,0,1.82829939739887,0.245733936501509,4.88460817580699,0.218441372130172,0.527533956456907,0.618831764800233,1.32558950291166,0.672325146451775,1.20538905604795,0,0,0.369363174230364,1.63200552995402,0,0.85870796139317,2.05311637609326,0.627713197974014,1.14620108621927,1.39571002064908,1.10195093839151,2.75354993794233,1.15148819429164,1.70297735647684,6.43594857135249,2.10844143144775,3.69754010166788,1.85921281392724,2.41687695228617,0.293600439334847,5.53995408531877,5.81578897663411,3.25516306073778,3.58264758783879,3.88672399222775,3.8636335145128,3.05336301437086,3.77875943688809,5.82201746850759,3.48643555358527,5.75635043230556,3.09706370895104,2.8769239232215,9.22178543504762,5.67557351732605,1.72372840368309,7.10033151942209,9.47985406160392,1.88242339542605,2.18324920046277,2.47195832889593,1.83650335422542,2.88836124368484,3.19668562899521,3.29851300186716,8.57693727773017,5.54092175692502,1.45104619314292,4.53908179752912,5.60540024096017,4.52247597462138,5.73631210262222,8.03598725408932,2.42159801053347,3.68277635987565,3.48108626184973,1.69004229049553,4.46469029926591,2.30624510059213,2.92054440980887,3.45406853535464,2.89306056054744,2.85012743741249,3.77941686678271,2.00930569141097,1.75996244461323,1.63841583378639,1.77901850772711,0.853460445133014,1.20118796110804,1.72425731986345,0,0.954053754535364,0.569212969109448,0.587237189370939,0.764546456250458,0,1.12101712596307,0.790152254325231,1.37696839079683,2.35806457649499,1.02800749499755,1.17030546773475,0,0.473447805734733,1.94826728407911,1.22551502573691,1.17842362989935,0.443067789167242,1.08321545506006,1.28091319725675,2.21100890851793,0.986627427622057,1.10540007114339,0.579606171470105,1.18629250529648,0.802622484269139,2.09071047609954,1.47302145506836,0.766440987203842,1.03088233644789,1.01207876807801,0.637130828648193,1.30216690771284,0,1.6563263098555,1.02389288923535,0,1.65744076430812,0,3.42731463482045,2.67440195783507,0.579297615531196,0,0,0.255725123687061,1.44575660953827,2.00535164254356,1.73815822752988,1.5905718941022,1.45990461090791,0.661743720148475,0.886917589850256,0.43917392846563,1.24430121722827,1.82147644146271,0.370784442784429,2.92092654289215,2.26368658489047,3.58986493400936,0.238490624305342,0,0,1.19257444420023,0,1.73570250803797,0.56530794192401,1.25849830862972,0.825354125820202,1.46296476575767,0.258416759169329,0.71153252537342,0.33472061276467,2.81980521976403,1.52054421143703,0.488124115096339,1.83831540172934,1.62028389576352,1.60739510911344,2.69435247151404,0.788280363383256,0,1.89853131913626,1.09921046358244,0,0,1.3082821564276,0.496971951695318,0.506522046658319,1.98613771219828,1.43418310374407,0.709336764396714,1.68203280042692,0,0.74000264525148,0.311211035399766,1.21239604862719,0.653847612453835,0.302714855289863,0,0.937285727335186,0.624320153660641,1.71141546463335,0.896692083310806,1.64408298101271,1.45685649931318,1.40450806702248,1.83738754129404,0.737005903870608,1.65321249881225,1.18800285728205,1.7308685049499,0,0,0.505008341862199,0.750711119231785,0.554128230968366,0.438977620880838,2.14541457059314,0.901428353439581,0.453728732640084,2.15267562826634,2.77624605464138,1.48352330811693,2.10063767259082,1.03052529238439,2.06112432036503,1.48893485065272,2.36286865137773,0.876933046450788,1.26216887122057,1.01254888506529,1.61646056818812,1.06502877754984,1.61203357164224,0.508681776931463,0.386521706326594,0.272746120590835,0.573609190778008,1.46368447355514,1.59035721985782,1.04574548582567,0.829288440122964,1.26160425437814,0.36497735907583,0,3.85944562915731,0,0.464367928031979,0,2.36613600079688,1.85443159085912,1.44606617930089,2.09558548191549,1.96091499683166,1.89816495288877,1.48314438976181,1.76599318612811,0,2.21446636387394,1.40241773803446,0.8231480226628,2.94017422771084,2.53510069643662,2.94848165003288,1.18157981336281,3.09024169590255,0.614942192715568,0,0.98775256867763,0,0.502644862058154,1.20364978706088,0.651616610620649,2.07986957055916,1.44331342025273,1.15930404975077,0.469634776943287,1.44366447761074,3.24089858803628,2.47330397904978,5.53143078571493,6.86788929675898,3.69325509131096,1.40402559083543,1.93220510975347,0,2.35174979478403,2.1266264586358,1.43293636324557,2.03443756959773,2.30029607499127,2.46331618947972,2.72950145441001,2.69526550203004,2.88239906833923,2.27236380167484,1.58744735730423,3.4378958300245,3.51652341630141,3.4214489204541,0.514137463516618,1.20137223137567,2.85826432630578,0.224262168690721,0,0.4400297149257,1.55126058909333,0,0.845302752556,1.06375246633948,0,2.05765899409714,2.83698264046557,0.799266537048298,0.285955987316295,0,2.46972101034231,0,0,2.37585561880029,1.50719688529793,0,0.799783929456456,1.2162378064119,1.00451418286425,8.43335757932127,1.19812427745791,0,2.85273810081437,0.289562613335158,0.410952645100767,0.716243852959582,0.448340575974109,2.56139988262505,2.80315847317372,3.33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| |||
|short_description=p3@DDB2 | |||
}} |
Revision as of 07:34, 11 January 2014
Short description: | p3@DDB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DDB2_5end |
Coexpression cluster: | NA |
Association with transcript: | -464bp_to_ENST00000256996, ENST00000378600, ENST00000378601, ENST00000378603, NM_000107, uc001neb.2, uc001nec.2, uc001ned.2, uc001nee.2, uc009yli.1_5end |
EntrezGene: | DDB2 |
HGNC: | 2718 |
UniProt: | Q92466 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 6.51e-25 | 67 |
myeloid lineage restricted progenitor cell | 3.83e-23 | 66 |
macrophage dendritic cell progenitor | 8.70e-23 | 61 |
monopoietic cell | 1.71e-21 | 59 |
monocyte | 1.71e-21 | 59 |
monoblast | 1.71e-21 | 59 |
promonocyte | 1.71e-21 | 59 |
defensive cell | 6.90e-21 | 48 |
phagocyte | 6.90e-21 | 48 |
classical monocyte | 1.30e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.30e-20 | 42 |
myeloid leukocyte | 1.86e-19 | 72 |
myeloid cell | 6.35e-15 | 108 |
common myeloid progenitor | 6.35e-15 | 108 |
hematopoietic lineage restricted progenitor cell | 9.70e-14 | 120 |
leukocyte | 2.82e-13 | 136 |
nongranular leukocyte | 1.18e-11 | 115 |
hematopoietic stem cell | 1.04e-09 | 168 |
hematopoietic oligopotent progenitor cell | 1.21e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.21e-09 | 161 |
hematopoietic cell | 4.96e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.13e-21 | 76 |
bone element | 8.02e-19 | 82 |
skeletal element | 6.63e-17 | 90 |
immune system | 2.45e-16 | 93 |
hematopoietic system | 1.56e-15 | 98 |
blood island | 1.56e-15 | 98 |
hemolymphoid system | 8.82e-14 | 108 |
skeletal system | 4.33e-13 | 100 |
neural tube | 2.04e-10 | 56 |
neural rod | 2.04e-10 | 56 |
future spinal cord | 2.04e-10 | 56 |
neural keel | 2.04e-10 | 56 |
regional part of nervous system | 6.45e-10 | 53 |
regional part of brain | 6.45e-10 | 53 |
brain | 5.11e-09 | 68 |
future brain | 5.11e-09 | 68 |
central nervous system | 6.77e-08 | 81 |
regional part of forebrain | 1.61e-07 | 41 |
forebrain | 1.61e-07 | 41 |
anterior neural tube | 1.61e-07 | 41 |
future forebrain | 1.61e-07 | 41 |
nervous system | 2.56e-07 | 89 |
brain grey matter | 6.10e-07 | 34 |
gray matter | 6.10e-07 | 34 |