FFCP PHASE1:Hg19::chr12:56114267..56114277,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5959 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9940 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000547301_5end | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_4_at_RDH5_5end | |||
|id=chr12:56114267..56114277,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.43e-12!180;CL:0000680!1.77e-11!57;CL:0000056!1.77e-11!57;CL:0000355!1.77e-11!57;CL:0000136!1.41e-10!15;CL:0000187!5.09e-10!54;CL:0000183!3.62e-09!59;CL:0000192!8.53e-09!42;CL:0000514!8.53e-09!42;CL:0000393!4.34e-08!60;CL:0000211!4.34e-08!60;CL:0002540!3.49e-07!6;CL:0000359!7.05e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.19e-16;13!CL:0000135;1.92e-09;3!CL:0000388;1.92e-09;3!CL:0002540;3.64e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,2.69e-14,15;CL:0000135,1.31e-09,3;CL:0000388,1.31e-09,3;CL:0002540,5.11e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;5.19e-10;3!DOID:127;5.19e-10;3!DOID:0060072;1.38e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.94e-10,3;DOID:127,3.94e-10,3;DOID:0060072,1.13e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002385!6.55e-12!63;UBERON:0001015!6.55e-12!63;UBERON:0000383!6.55e-12!63;UBERON:0000914!1.80e-11!83;UBERON:0002329!1.80e-11!83;UBERON:0003077!1.80e-11!83;UBERON:0003059!1.80e-11!83;UBERON:0007282!1.80e-11!83;UBERON:0009618!1.80e-11!83;UBERON:0007285!1.80e-11!83;UBERON:0001134!7.54e-11!61;UBERON:0002036!7.54e-11!61;UBERON:0003082!7.54e-11!61;UBERON:0005256!1.95e-10!143;UBERON:0004290!9.64e-10!70;UBERON:0000486!3.20e-08!82;UBERON:0000475!3.70e-08!365;UBERON:0002100!5.16e-08!216;UBERON:0003104!5.14e-07!238;UBERON:0009142!5.14e-07!238;UBERON:0001135!6.05e-07!15;UBERON:0000481!9.24e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.92e-09;3!UBERON:0000043;1.92e-09;3!UBERON:0007845;1.92e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.31e-09,3;UBERON:0000043,1.31e-09,3;UBERON:0007845,1.31e-09,3 | |||
|phase1_expression=0,1.92690471501885,0.422863212287913,1.0007329835313,3.5756887554183,0,7.59899634504932,0.631719873426831,3.3954131665979,0,0,0,0,0.618831764800233,1.65698687863958,1.34465029290355,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0.286235987131057,0.410623275218653,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1686349143074,2.00535164254356,0.724232594804119,0,0,0.283604451492204,0.221729397462564,0.527008714158756,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,1.72131935057184,0.860509862246441,0,0.560677600142307,0,0,0,0,0,0,0,0,1.87296046098192,0,1.04614076386261,0,0,0,0.816616685019573,0.122834317311768,0.516628905878827,0,0.247266929278557,0,0,0,0,0.831192346452549,1.31693286264251,0.919463387397059,0.751190294532984,0,0.179389635688862,0.427114777637135,0.635795703478686,0.300091096084402,0.515262646192195,0,0.744467425326359,0.168776332241266,0,0,0.0920498986422993,0,1.42003837006646,0.403008392910561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88751792667834,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,2.53510069643662,5.89696330006576,7.68026878685825,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0.771622122786426,4.25547396069835,1.0656887160644,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0.239624855491583,0,0,1.01346914667305,0.61642896765115,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0.315404830067869,0.937131319941706,0.601892199455438,2.27407504055985,1.03473071292505,0,0.184369168541703,0.695068915744663,0,0.686286847621712,0,0,0,0,0,0,0,0.153461973288062,0,0,0.511707249066704,0,0,0.462629081407967,0.177561725313127,0.246381468041427,0,0.232420756919918,0.120859449591622,0,0,0.34444334449382,0.182091168006717,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0.656029291399411,1.30151357865721,4.22468147755661,0,0,0,0,0,0,1.23238893691716,0.460511024178389,0.275673144969061,0.214840489736547,0.580066775656914,0.255679882248303,0.178064071293475,0,0,0,0,0.929691098594572,1.5740617341532,0,0.308033580176089,1.59691809095107,0,0,0.858749320451947,0,0.949138274156178,0,1.535386747868,0,0.95460974377781,0,0.179872457583315,0,0.117812402345686,0.606547444719948,7.92551605865041,0.421258456238981,0,0.243713489631284,0,0.136499911407986,0.141405431953713,1.13008116620243,0,0,3.5076070820301,0.578775534266688,0,0,0.92947049429925,0.281695602532241,0,0,0,1.77380532035299,2.53329162357197,1.97576935775941,0,0,0,0,0,4.0481834334015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,1.02555725490326,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0.102268682502155,0,0.933118762985422,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0.995261931078505,1.59223616106011,1.22206028986725,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0,1.20990716048664,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0.343972064943233,0,0,0,0.0969890164884194,0,5.19755703795225,0,0,0,0,0.0801588202515337,2.13452994739353,0,0.144090417154106,0,0,0,0.124252535565433,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0.360299883542404,1.16495949527454,0.236349546921671,0,0.13480708770837,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.788057072991982,1.46872846777995,0,0,0,0,0.662091970365432,0,5.97299561929084,7.77799342081141,2.93928624098468,0,0,0,0,4.39656701034247,2.65013777824443,0,0,0.171086837884329,0,0,0,0,0,0,0,0,2.72008901684737,3.2589686222951,4.59518365145192,1.96723578425883,0,0.886068179966986,0,0,0,0,0,0,0,0.303298235083296,0,0.235265819698172,0,0,0.298509605773748,0,1.10961172300523,0.947015026375446,2.0125432140206,8.00830099436882,0,1.96600200892211,0.466311601748341,0.73927574994817,0,0.899606224327209,0.155262956876259,0.829412415681711,1.06336685823198,0,0,0,0.406870733204662,0.363697318405119,0.214821114084977,0,0.398095888698616,2.80019435264208,0.343395705182793,0.336749488765919,0,0,0,0,0,0.231522474323834,0,0,0,0,0,1.92914038270915,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0.496211178389294,0,0,0.535701835878287,0,0,0,0,0,0.171488009437418,0,0,0,0,0.078493092850514,0,0,0,1.07963795609311,0,45.0302228312935,0,0,0,0,0,1.3657478167516,0,0,0,0.170426809518315,0,0.68732060563215,0,0,0.111855431797792,0.294450700845729,7.43699342391843,0,0.513314034281235,0,0.971421986118279,0,0,0,0,0,0,2.46957305945423,3.49695296806332,0,0.245148321753905,0,0,0,1.6906229103336,0.339854229375634,0,0,0,0,0,0,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| |||
|short_description=p4@RDH5 | |||
}} |
Revision as of 13:54, 11 January 2014
Short description: | p4@RDH5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RDH5_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000547301_5end |
EntrezGene: | RDH5 |
HGNC: | 9940 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 2.69e-14 | 15 |
fibrocyte | 1.31e-09 | 3 |
tendon cell | 1.31e-09 | 3 |
mesenchymal stem cell of the bone marrow | 5.11e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 1.31e-09 | 3 |
tendon | 1.31e-09 | 3 |
regular connective tissue | 1.31e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.94e-10 | 3 |
leiomyoma | 3.94e-10 | 3 |
benign neoplasm | 1.13e-07 | 4 |