FFCP PHASE1:Hg19::chr16:82660594..82660607,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1012 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1753 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=16bp_to_uc002fgx.2,uc010chh.2,uc010vns.1,uc010vnt.1,uc010vnu.1_5end | |||
|coexpression_cluster_id=C3592 | |||
|description=CAGE_peak_3_at_CDH13_5end | |||
|id=chr16:82660594..82660607,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.37e-20!180;CL:0000220!2.81e-16!246;CL:0002321!4.86e-16!248;CL:0000222!1.76e-15!119;CL:0000057!1.84e-12!75;CL:0000680!4.76e-11!57;CL:0000056!4.76e-11!57;CL:0000355!4.76e-11!57;CL:0000187!8.11e-10!54;CL:0000183!1.22e-09!59;CL:0000359!1.09e-08!32;CL:0000192!2.62e-08!42;CL:0000514!2.62e-08!42;CL:0000393!3.56e-08!60;CL:0000211!3.56e-08!60;CL:0002139!6.65e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.80e-08;32!CL:0002139;1.61e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.44e-15,121;CL:0002321,8.03e-15,250;CL:0000057,1.39e-13,76;CL:0000680,7.72e-11,58;CL:0000056,7.72e-11,58;CL:0000355,7.72e-11,58;CL:0000187,1.53e-09,55;CL:0000359,1.36e-08,32;CL:0000393,6.30e-08,61;CL:0000211,6.30e-08,61;CL:0000192,7.30e-08,43;CL:0000514,7.30e-08,43;CL:0002139,1.92e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.27e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!4.56e-19!79;UBERON:0007798!4.56e-19!79;UBERON:0000055!2.22e-18!69;UBERON:0004872!7.66e-18!84;UBERON:0000483!9.93e-18!309;UBERON:0000119!1.42e-17!312;UBERON:0000477!1.96e-17!286;UBERON:0000475!5.38e-17!365;UBERON:0004111!7.64e-17!241;UBERON:0001009!1.23e-16!113;UBERON:0001981!1.23e-15!60;UBERON:0007500!1.23e-15!60;UBERON:0004537!1.23e-15!60;UBERON:0006965!1.23e-15!60;UBERON:0004535!1.73e-15!110;UBERON:0000468!1.34e-14!659;UBERON:0000914!6.09e-14!83;UBERON:0002329!6.09e-14!83;UBERON:0003077!6.09e-14!83;UBERON:0003059!6.09e-14!83;UBERON:0007282!6.09e-14!83;UBERON:0009618!6.09e-14!83;UBERON:0007285!6.09e-14!83;UBERON:0000486!1.26e-13!82;UBERON:0003914!1.95e-13!118;UBERON:0000467!4.17e-13!625;UBERON:0000480!6.95e-13!626;UBERON:0004290!1.42e-12!70;UBERON:0000481!5.04e-12!347;UBERON:0001134!7.15e-12!61;UBERON:0002036!7.15e-12!61;UBERON:0003082!7.15e-12!61;UBERON:0001637!9.50e-12!42;UBERON:0003509!9.50e-12!42;UBERON:0004572!9.50e-12!42;UBERON:0002385!1.45e-11!63;UBERON:0001015!1.45e-11!63;UBERON:0000383!1.45e-11!63;UBERON:0000025!9.02e-11!194;UBERON:0003102!5.70e-10!95;UBERON:0004573!7.54e-10!33;UBERON:0004571!7.54e-10!33;UBERON:0005256!1.14e-09!143;UBERON:0007100!2.05e-09!27;UBERON:0000490!1.07e-08!138;UBERON:0000948!3.83e-08!24;UBERON:0005498!3.83e-08!24;UBERON:0004140!3.83e-08!24;UBERON:0009881!3.83e-08!24;UBERON:0004141!3.83e-08!24;UBERON:0003084!3.83e-08!24;UBERON:0007005!3.83e-08!24;UBERON:0004139!3.83e-08!24;UBERON:0004291!3.83e-08!24;UBERON:0003103!6.96e-08!69;UBERON:0000947!1.62e-07!21;UBERON:0010191!1.62e-07!21;UBERON:0000033!2.54e-07!123;UBERON:0000153!7.84e-07!129;UBERON:0007811!7.84e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;2.03e-09;25!UBERON:0000055;2.39e-09;65!UBERON:0001637;2.64e-09;42!UBERON:0003509;2.64e-09;42!UBERON:0004572;2.64e-09;42!UBERON:0004573;4.74e-09;33!UBERON:0004571;4.74e-09;33!UBERON:0002049;1.51e-08;75!UBERON:0007798;1.51e-08;75!UBERON:0007500;2.66e-08;56!UBERON:0001981;2.66e-08;56!UBERON:0004537;2.66e-08;56!UBERON:0000948;4.99e-08;22!UBERON:0000947;2.79e-07;21!UBERON:0010191;2.79e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,8.33e-19,78;UBERON:0007798,8.33e-19,78;UBERON:0000055,1.02e-18,68;UBERON:0001009,7.45e-18,112;UBERON:0004872,1.20e-17,83;UBERON:0004535,1.35e-16,109;UBERON:0000483,1.08e-15,306;UBERON:0007500,1.29e-15,59;UBERON:0001981,1.29e-15,59;UBERON:0004537,1.29e-15,59;UBERON:0006965,1.29e-15,59;UBERON:0000119,5.39e-15,309;UBERON:0003914,3.03e-14,117;UBERON:0000486,9.68e-14,83;UBERON:0004111,9.80e-14,240;UBERON:0003077,7.93e-13,72;UBERON:0007285,7.93e-13,72;UBERON:0007503,1.18e-12,78;UBERON:0002329,1.52e-12,71;UBERON:0003059,1.52e-12,71;UBERON:0007282,1.52e-12,71;UBERON:0004290,1.52e-12,71;UBERON:0009618,1.52e-12,71;UBERON:0007524,2.33e-12,73;UBERON:0001637,6.41e-12,42;UBERON:0003509,6.41e-12,42;UBERON:0004572,6.41e-12,42;UBERON:0001134,9.90e-12,62;UBERON:0002036,9.90e-12,62;UBERON:0003082,9.90e-12,62;UBERON:0002385,3.41e-11,64;UBERON:0001015,3.41e-11,64;UBERON:0000383,3.41e-11,64;UBERON:0007100,3.34e-10,27;UBERON:0004573,8.04e-10,33;UBERON:0004571,8.04e-10,33;UBERON:0000025,1.52e-09,192;UBERON:0000490,2.35e-09,148;UBERON:0003102,2.79e-09,99;UBERON:0000948,8.35e-09,24;UBERON:0005498,8.35e-09,24;UBERON:0004140,8.35e-09,24;UBERON:0009881,8.35e-09,24;UBERON:0004141,8.35e-09,24;UBERON:0003084,8.35e-09,24;UBERON:0007005,8.35e-09,24;UBERON:0004139,8.35e-09,24;UBERON:0004291,8.35e-09,24;UBERON:0005256,1.66e-07,122;UBERON:0000947,3.26e-07,21;UBERON:0010191,3.26e-07,21;UBERON:0003103,4.89e-07,68;UBERON:0010314,8.20e-07,132 | |||
|phase1_expression=3.99692434395225,0.428201047781966,7.04772020479856,4.00293193412522,2.23480547213644,3.48935409640147,0,3.15859936713415,0.522371256399677,1.72013755551056,0,0,0,1.23766352960047,0.662794751455832,11.4295274896802,12.0538905604795,7.30310090387373,11.7103871709722,4.30923703268758,1.83600622119828,1.25381888591235,0.85870796139317,2.32686522623903,1.50651167513763,0,0,0,0,0,0.77408061658038,0.919421224478927,0.30120591877825,4.80680213216824,0,0,0,1.10799081706375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.68280343881454,18.4122089054684,10.843174571537,11.0294340339896,5.35932120155048,7.15757352345989,0.973269740605272,5.2939497611878,2.66075276955077,3.86473057049755,3.07800827419625,2.91436230634034,3.33705998505986,0,0,0,0,0,0,1.39133685156694,2.58070378531837,3.47140501607594,2.26123176769604,5.03399323451887,1.10047216776027,2.29894463190492,14.7297552726517,16.009481820902,18.4096337020569,14.0990260988201,15.2054421143703,10.2506064170231,8.08858776760911,4.0507097394088,7.76907636071494,3.14341121676638,2.47745257063309,1.53316637465883,1.89853131913626,1.64881569537367,0,0,3.92484646928281,19.3819061161174,12.5364206547934,12.8436905388822,45.6070226990614,10.9947198481491,6.16745360156538,6.4049397437823,19.98007142179,4.66816553099649,7.9479296521116,5.23078089963068,1.81628913173918,0,0,1.24864030732128,2.85235910772225,2.69007624993242,3.17073146338165,2.10434827678571,1.40450806702248,1.63323337003915,0.982674538494144,1.13658359293342,3.56400857184616,4.94533858557114,8.19145225744224,3.59309070908119,1.0100166837244,0.500474079487857,2.77064115484183,3.07284334616587,4.29082914118628,4.35690370829131,7.0327953559213,6.09924761342131,9.61008249683553,1.48352330811693,10.5031883629541,5.77094163735258,10.3056216018252,13.4004136558745,12.658224918095,2.82567314967476,3.02920529092937,4.41839513483037,6.14255015911485,7.10019185033229,3.92933183087797,2.88253006927829,14.4945639872473,9.00062197949754,14.3402297694502,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,4.69348596989448,2.57296375277154,2.76269842704961,0,0.721879481669586,0.946454400318751,1.34867752062481,0,0.882351781859152,0.653638332277218,0.949082476444386,1.61797569792197,1.17732879075208,0.38474715694639,2.21446636387394,1.40241773803446,2.4694440679884,0,0,0,0.590789906681404,0,0,7.03428022223955,13.6090353906696,2.24803506515239,4.62433273093502,8.51813695458472,0.977424915930974,1.03993478527958,7.21656710126366,3.13012093432707,4.46153038096122,6.92958949253154,10.648666789262,5.89787871927255,0,0,0,0,0,11.2480600784132,20.325837512062,15.028160307693,13.1651028373187,11.3347236020445,4.98397482914775,0,0,0,0.144119953416961,0,0.126995788584338,0,0,3.4214489204541,0.308482478109971,0,0.285826432630578,0.448524337381443,0.43596006883328,0.7333828582095,30.6373966345933,3.57656445851882,4.22651376278,8.51001973071586,1.04007436911366,0.514414748524284,0,0,10.1514375497285,0,0,5.86325131728723,7.10783897485092,1.58390374586686,2.1100756394171,0.871533458600294,0.299918973546171,0,0,0,38.3399768786532,17.2292903751171,2.85273810081437,7.81819056004928,9.04095819221687,13.4295722429922,0,0,0,0,0.254094624222463,0,0,1.00509759200609,2.55175500661265,0,0,0,0.49076596687656,0.500170521059677,0,12.4782516918484,6.42344359669782,8.35822799679854,16.1655152689944,3.61135319673263,0,0,1.99267679560631,2.58116835958384,1.47702144595741,1.17480694477644,0.343143423810856,0,0,0,0,0,0.30239029332968,13.6459294300327,10.7423381301644,6.17452207752762,18.5801766420766,11.2575594794675,12.5466058492014,13.3576259800492,2.46735510084249,4.08391968220192,1.23190734020714,2.07701771673448,1.51073491997947,0,8.42127175273796,2.67034867914099,4.36294903025506,6.55528204824181,3.93373244878272,2.25599806453706,3.38867483259425,2.35304930753057,4.38417673959782,5.69978796021529,2.27466768141793,2.55140557914773,2.80690690932781,4.62681758070868,2.70946437543853,1.00337954770971,1.01950509218015,0.831076008928724,4.25362033972139,0,0,3.33385162651306,2.62411716559765,6.83294628795036,1.95777922130672,0,0,7.46545199395024,1.30012049207304,19.2820715812991,12.4705226596837,1.84858340537573,1.5350367472613,2.48105830472155,1.28904293841928,1.16013355131383,2.30111894023472,6.85546674479878,7.27253627588304,1.34533047155574,11.9955949744909,1.92199783625545,1.39453664789186,17.9443037693465,0.6970372701606,20.0221827114458,5.85536633348724,0.869932992075073,12.9726953372744,4.57999637574372,3.72158369359667,4.11293252134344,1.14378116354295,0.767693373934002,1.71175595213568,3.18203247925937,1.56989728039846,3.77732160924961,3.56898138656871,3.18093486333353,6.67202189191943,1.58510321173008,3.37006764991185,0,10.7233935437765,3.16950440270266,6.6884956589913,3.53513579884282,5.65040583101214,3.85955740482287,3.980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| |||
|short_description=p3@CDH13 | |||
}} |
Revision as of 12:29, 20 January 2014
Short description: | p3@CDH13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDH13_5end |
Coexpression cluster: | C3592_Fibroblast_schwannoma_basal_salivary_mesenchymal_large_Multipotent |
Association with transcript: | 16bp_to_uc002fgx.2, uc010chh.2, uc010vns.1, uc010vnt.1, uc010vnu.1_5end |
EntrezGene: | CDH13 |
HGNC: | 1753 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.44e-15 | 121 |
embryonic cell | 8.03e-15 | 250 |
fibroblast | 1.39e-13 | 76 |
muscle precursor cell | 7.72e-11 | 58 |
myoblast | 7.72e-11 | 58 |
multi-potent skeletal muscle stem cell | 7.72e-11 | 58 |
muscle cell | 1.53e-09 | 55 |
vascular associated smooth muscle cell | 1.36e-08 | 32 |
electrically responsive cell | 6.30e-08 | 61 |
electrically active cell | 6.30e-08 | 61 |
smooth muscle cell | 7.30e-08 | 43 |
smooth muscle myoblast | 7.30e-08 | 43 |
endothelial cell of vascular tree | 1.92e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.27e-07 | 14 |